Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47084 * 2 1 4 4 H 1.09005 * 110.33438 * 55.70022 * 3 2 1 5 5 C 1.54898 * 110.37695 * 177.95867 * 3 2 1 6 6 C 1.55258 * 101.60175 * 155.81634 * 5 3 2 7 7 C 1.54320 * 103.08443 * 324.48855 * 6 5 3 8 8 H 1.08999 * 109.88488 * 262.80082 * 7 6 5 9 9 C 1.52995 * 109.88450 * 141.61209 * 7 6 5 10 10 N 1.47441 * 107.23419 * 22.20563 * 7 6 5 11 11 C 1.46889 * 111.00038 * 123.25657 * 10 7 6 12 12 C 1.50705 * 109.47258 * 76.52354 * 11 10 7 13 13 O 1.21277 * 119.99845 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00187 * 180.02562 * 12 11 10 15 15 C 1.46509 * 119.99919 * 359.97438 * 14 12 11 16 16 C 1.52995 * 109.47379 * 90.00330 * 15 14 12 17 17 C 1.46503 * 120.00166 * 179.97438 * 14 12 11 18 18 C 1.50697 * 109.46870 * 89.99834 * 17 14 12 19 19 H 1.07995 * 120.00227 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99516 * 180.02562 * 18 17 14 21 21 N 1.31518 * 119.99881 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00245 * 359.97438 * 20 18 17 23 23 H 1.48490 * 109.47273 * 90.00550 * 22 20 18 24 24 H 1.48506 * 109.46852 * 210.00477 * 22 20 18 25 25 H 1.48500 * 109.46815 * 330.00234 * 22 20 18 26 26 H 1.09002 * 109.47653 * 59.99705 * 1 2 3 27 27 H 1.09004 * 109.46991 * 299.99420 * 1 2 3 28 28 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46927 * 120.00125 * 2 1 3 30 30 H 1.09002 * 109.46560 * 240.00266 * 2 1 3 31 31 H 1.09001 * 110.98966 * 273.99358 * 5 3 2 32 32 H 1.09008 * 110.98889 * 37.80461 * 5 3 2 33 33 H 1.09006 * 110.73942 * 206.05357 * 6 5 3 34 34 H 1.09001 * 110.75784 * 82.93319 * 6 5 3 35 35 H 1.08995 * 109.47495 * 303.54979 * 9 7 6 36 36 H 1.08992 * 109.47541 * 63.55555 * 9 7 6 37 37 H 1.09007 * 109.46584 * 183.55225 * 9 7 6 38 38 H 1.09007 * 109.47237 * 196.51842 * 11 10 7 39 39 H 1.09002 * 109.47486 * 316.52117 * 11 10 7 40 40 H 1.09008 * 109.46704 * 210.00528 * 15 14 12 41 41 H 1.08996 * 109.46935 * 329.99455 * 15 14 12 42 42 H 1.08995 * 109.47391 * 180.02562 * 16 15 14 43 43 H 1.08999 * 109.46719 * 300.00244 * 16 15 14 44 44 H 1.09000 * 109.46914 * 59.99650 * 16 15 14 45 45 H 1.09002 * 109.46854 * 209.99927 * 17 14 12 46 46 H 1.08994 * 109.46803 * 329.99670 * 17 14 12 47 47 H 0.96997 * 120.00387 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6232 1.9916 0.8444 5 6 3.5880 1.4673 0.0517 6 6 3.8992 2.8520 -0.5777 7 6 2.8038 3.0006 -1.6544 8 1 3.1972 2.7045 -2.6269 9 6 2.3176 4.4503 -1.7056 10 7 1.6915 2.1117 -1.2715 11 6 0.4364 2.8640 -1.1437 12 6 -0.1084 3.1690 -2.5154 13 8 0.4903 2.7967 -3.5022 14 7 -1.2603 3.8564 -2.6455 15 6 -1.9832 4.3067 -1.4534 16 6 -1.4944 5.7011 -1.0568 17 6 -1.7896 4.1533 -3.9789 18 6 -2.7006 3.0360 -4.4179 19 1 -2.8681 2.1893 -3.7689 20 6 -3.3192 3.0944 -5.6487 21 7 -4.1139 2.1191 -6.0322 22 14 -3.0288 4.5587 -6.7716 23 1 -1.8619 4.2863 -7.6485 24 1 -4.2342 4.7875 -7.6084 25 1 -2.7598 5.7664 -5.9505 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.9451 1.4147 1.0802 32 1 4.0116 0.6622 -0.5487 33 1 4.8898 2.8553 -1.0327 34 1 3.8165 3.6427 0.1680 35 1 1.9664 4.7508 -0.7185 36 1 3.1386 5.0983 -2.0119 37 1 1.5012 4.5346 -2.4229 38 1 -0.2890 2.2691 -0.5888 39 1 0.6244 3.7967 -0.6118 40 1 -3.0512 4.3436 -1.6685 41 1 -1.8016 3.6112 -0.6340 42 1 -2.0319 6.0360 -0.1697 43 1 -0.4264 5.6641 -0.8418 44 1 -1.6761 6.3965 -1.8762 45 1 -2.3498 5.0879 -3.9475 46 1 -0.9643 4.2479 -4.6845 47 1 -4.5494 2.1603 -6.8979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357553947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = -23.987646 kcal Electronic energy + Delta-G solvation = -24289.500880 eV Core-core repulsion = 21086.626582 eV Total energy + Delta-G solvation = -3202.874297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28427 -38.35968 -35.27165 -33.88552 -32.81957 -32.14354 -30.28110 -29.78228 -28.15562 -26.03685 -25.68214 -22.93751 -22.50690 -21.80372 -20.96389 -19.31819 -18.04885 -16.90233 -16.57806 -16.46635 -15.91366 -15.07867 -14.83420 -14.06773 -13.88700 -13.64254 -13.56647 -13.41297 -13.14147 -12.92037 -12.62673 -12.43956 -12.36635 -12.19324 -11.95077 -11.74759 -11.44580 -11.35123 -11.32555 -11.12538 -10.90511 -10.79751 -10.71875 -10.60569 -10.50373 -10.45781 -10.39463 -10.10010 -9.48177 -8.87432 -8.54173 -8.00822 -7.62497 -6.03919 -4.01873 3.31794 3.37607 3.39671 3.46439 3.67303 4.19675 4.43576 4.56676 4.63885 4.86709 5.09819 5.11028 5.19923 5.26746 5.29784 5.32595 5.33936 5.41447 5.50152 5.55930 5.57949 5.61434 5.65215 5.69940 5.74417 5.80611 5.90072 5.97751 5.98820 6.05867 6.12024 6.16480 6.24682 6.37313 6.40550 6.42057 6.50334 6.74876 6.98935 7.17486 7.20737 7.46200 7.67174 8.36297 8.53280 8.99945 9.14482 9.57009 11.09678 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.005089 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.255341 B = 5500.369807 C = 5775.456838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C 0.071 3.929 4 H 0.051 0.949 5 C -0.123 4.123 6 C -0.140 4.140 7 C 0.079 3.921 8 H 0.090 0.910 9 C -0.174 4.174 10 N -0.498 5.498 11 C 0.017 3.983 12 C 0.513 3.487 13 O -0.520 6.520 14 N -0.599 5.599 15 C 0.107 3.893 16 C -0.170 4.170 17 C 0.218 3.782 18 C -0.525 4.525 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.899 5.899 22 Si 0.875 3.125 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.267 1.267 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 3.545 16.400 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.037 4.037 4 H 0.069 0.931 5 C -0.161 4.161 6 C -0.178 4.178 7 C -0.029 4.029 8 H 0.108 0.892 9 C -0.232 4.232 10 N -0.222 5.222 11 C -0.114 4.114 12 C 0.299 3.701 13 O -0.396 6.396 14 N -0.332 5.332 15 C -0.017 4.017 16 C -0.228 4.228 17 C 0.098 3.902 18 C -0.564 4.564 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.703 3.297 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.348 2.916 15.303 19.878 hybrid contribution -0.046 1.343 -0.022 1.344 sum 12.302 4.259 15.281 20.074 Atomic orbital electron populations 1.21889 0.95890 1.01762 1.01945 1.21452 0.96158 0.95030 1.01737 1.22631 0.94713 0.95699 0.90655 0.93102 1.22726 0.95034 0.97643 1.00726 1.22937 0.99443 0.97185 0.98245 1.22328 0.90388 0.91100 0.99100 0.89222 1.22483 1.02568 0.96636 1.01533 1.63313 1.01200 1.28649 1.29044 1.22542 0.93474 0.98814 0.96589 1.20104 0.80942 0.78400 0.90641 1.90670 1.58698 1.50575 1.39622 1.47956 1.22524 1.54912 1.07798 1.21404 0.98159 0.94407 0.87764 1.22245 1.00925 0.98251 1.01418 1.19595 0.94529 0.96464 0.79645 1.21345 1.26005 1.05977 1.03025 0.90781 1.24855 0.94729 0.96008 0.97428 1.69900 1.30626 1.32145 1.21066 0.86863 0.78008 0.83470 0.81408 1.19958 1.21145 1.19148 0.91293 0.93501 0.92870 0.92199 0.91002 0.91115 0.90482 0.90963 0.91688 0.92924 0.92301 0.90868 0.88386 0.91486 0.89766 0.91718 0.92051 0.93184 0.92186 0.95486 0.94766 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.72 37.16 0.32 -1.66 16 2 C -0.11 -1.23 5.65 -26.73 -0.15 -1.38 16 3 C 0.07 0.84 2.54 -66.19 -0.17 0.67 16 4 H 0.05 0.56 7.81 -51.93 -0.41 0.15 16 5 C -0.12 -1.23 6.51 -24.53 -0.16 -1.39 16 6 C -0.14 -1.45 6.47 -24.84 -0.16 -1.61 16 7 C 0.08 1.09 3.39 -66.73 -0.23 0.87 16 8 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 9 C -0.17 -2.35 7.68 37.16 0.29 -2.07 16 10 N -0.50 -7.47 4.23 -216.96 -0.92 -8.39 16 11 C 0.02 0.26 2.80 -4.98 -0.01 0.25 16 12 C 0.51 10.52 5.53 -10.98 -0.06 10.46 16 13 O -0.52 -12.98 14.95 5.56 0.08 -12.89 16 14 N -0.60 -12.33 2.46 -175.06 -0.43 -12.76 16 15 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 16 C -0.17 -2.15 10.24 37.15 0.38 -1.77 16 17 C 0.22 5.39 4.23 -5.19 -0.02 5.37 16 18 C -0.52 -15.28 9.94 -34.44 -0.34 -15.62 16 19 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 21 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 22 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 23 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.07 1.08 6.10 -51.93 -0.32 0.76 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.79 8.06 -51.92 -0.42 0.37 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 35 H 0.05 0.62 6.59 -51.93 -0.34 0.28 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.23 4.90 -51.93 -0.25 0.97 16 38 H 0.10 1.43 4.66 -51.92 -0.24 1.19 16 39 H 0.07 0.90 4.50 -51.93 -0.23 0.67 16 40 H 0.08 1.38 8.07 -51.92 -0.42 0.97 16 41 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 46 H 0.03 0.91 6.85 -51.93 -0.36 0.55 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 352.83 15.07 5.32 5.32 Total: -1.00 -33.74 352.83 -8.57 -42.31 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.29 Total: 0.69 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -0.44 Total: -4.19 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.57 Total: -48.46 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.74 -8.57 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357553947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.322 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds