Wall clock time and date at job start Tue Mar 31 2020 06:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 N 1.46503 * 109.47066 * 179.97438 * 3 2 1 5 5 C 1.37090 * 120.00127 * 263.89730 * 4 3 2 6 6 H 1.08001 * 120.00059 * 193.83822 * 5 4 3 7 7 C 1.38952 * 120.00411 * 13.83546 * 5 4 3 8 8 N 1.31412 * 119.99466 * 17.08727 * 7 5 4 9 9 Si 1.86799 * 120.00267 * 197.08819 * 7 5 4 10 10 H 1.48498 * 109.46926 * 60.00028 * 9 7 5 11 11 H 1.48500 * 109.46871 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47008 * 300.00144 * 9 7 5 13 13 C 1.34783 * 119.99517 * 83.89938 * 4 3 2 14 14 O 1.21286 * 119.99467 * 175.04841 * 13 4 3 15 15 C 1.50697 * 120.00261 * 355.05023 * 13 4 3 16 16 H 1.09010 * 109.47119 * 335.12153 * 15 13 4 17 17 C 1.53006 * 109.47256 * 95.11632 * 15 13 4 18 18 N 1.46897 * 109.47168 * 215.11765 * 15 13 4 19 19 C 1.48001 * 110.99775 * 192.29634 * 18 15 13 20 20 C 1.50448 * 112.82497 * 191.35027 * 19 18 15 21 21 C 1.54299 * 108.50356 * 93.72846 * 20 19 18 22 22 C 1.45878 * 112.18725 * 281.46171 * 21 20 19 23 23 C 1.54313 * 112.18092 * 61.11900 * 22 21 20 24 24 C 1.48003 * 110.99716 * 63.57987 * 18 15 13 25 25 H 1.08998 * 109.47073 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46689 * 300.00240 * 1 2 3 27 27 H 1.09003 * 109.46725 * 59.99674 * 1 2 3 28 28 H 1.09003 * 109.46687 * 240.00279 * 2 1 3 29 29 H 1.08998 * 109.47109 * 120.00598 * 2 1 3 30 30 H 1.09000 * 109.46764 * 59.99967 * 3 2 1 31 31 H 1.08998 * 109.47486 * 300.00368 * 3 2 1 32 32 H 0.97005 * 119.99561 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46836 * 300.48064 * 17 15 13 34 34 H 1.08995 * 109.47136 * 180.47956 * 17 15 13 35 35 H 1.08993 * 109.46813 * 60.47958 * 17 15 13 36 36 H 1.09000 * 108.81575 * 312.20888 * 19 18 15 37 37 H 1.08996 * 108.81399 * 70.48609 * 19 18 15 38 38 H 1.09000 * 109.63124 * 334.02221 * 20 19 18 39 39 H 1.08999 * 109.63096 * 213.43642 * 20 19 18 40 40 H 1.09004 * 108.93889 * 160.76464 * 21 20 19 41 41 H 1.09001 * 108.93842 * 42.16245 * 21 20 19 42 42 H 1.09002 * 108.93859 * 300.42948 * 22 21 20 43 43 H 1.09002 * 108.94254 * 181.81742 * 22 21 20 44 44 H 1.09006 * 109.63021 * 161.75952 * 23 22 21 45 45 H 1.08997 * 109.63152 * 41.17190 * 23 22 21 46 46 H 1.08996 * 108.80745 * 205.69776 * 24 18 15 47 47 H 1.08997 * 108.81301 * 323.97483 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5687 1.1814 6 1 5.2466 1.7925 1.1715 7 6 3.5252 1.4089 2.3910 8 7 2.3517 0.8182 2.4225 9 14 4.2992 2.0337 3.9720 10 1 4.5146 3.4996 3.8721 11 1 3.3959 1.7423 5.1142 12 1 5.6027 1.3553 4.1868 13 6 4.1794 1.3181 -1.1598 14 8 5.3889 1.4080 -1.1709 15 6 3.4306 1.0675 -2.4433 16 1 2.4762 0.5906 -2.2200 17 6 3.1812 2.3981 -3.1564 18 7 4.2262 0.1887 -3.3108 19 6 3.6718 0.1545 -4.6826 20 6 4.2793 -0.9296 -5.5307 21 6 3.3848 -2.1834 -5.4375 22 6 3.5992 -2.9222 -4.1981 23 6 3.2669 -2.0766 -2.9508 24 6 4.4153 -1.1408 -2.6886 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6768 1.9564 -0.8899 32 1 1.8877 0.7062 3.2670 33 1 2.5981 3.0534 -2.5093 34 1 2.6322 2.2177 -4.0805 35 1 4.1357 2.8710 -3.3872 36 1 2.5956 -0.0076 -4.6229 37 1 3.8541 1.1175 -5.1595 38 1 5.2786 -1.1646 -5.1642 39 1 4.3353 -0.5958 -6.5668 40 1 3.6034 -2.8375 -6.2816 41 1 2.3400 -1.8773 -5.4907 42 1 4.6429 -3.2324 -4.1472 43 1 2.9676 -3.8105 -4.2018 44 1 3.1248 -2.7318 -2.0913 45 1 2.3588 -1.5009 -3.1300 46 1 5.3287 -1.5864 -3.0824 47 1 4.5253 -1.0125 -1.6118 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357791528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:14 Heat of formation + Delta-G solvation = -26.288547 kcal Electronic energy + Delta-G solvation = -24799.412323 eV Core-core repulsion = 21596.438251 eV Total energy + Delta-G solvation = -3202.974072 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.68854 -38.08567 -35.34794 -34.43410 -32.28370 -31.95743 -31.25079 -30.14984 -26.09744 -25.89086 -24.94063 -24.21541 -22.53879 -20.62153 -20.50288 -19.60499 -18.13808 -16.90027 -16.41869 -15.89895 -15.49687 -14.74232 -14.44297 -13.93898 -13.75870 -13.62780 -13.59810 -13.28099 -12.95270 -12.84575 -12.40558 -12.14500 -11.92835 -11.70564 -11.65502 -11.58042 -11.26205 -11.17486 -10.98447 -10.82787 -10.70940 -10.64197 -10.44333 -10.40276 -10.32017 -10.24433 -10.03595 -9.96178 -9.62673 -8.81340 -8.23617 -7.59820 -7.55971 -6.21685 -3.74896 3.21555 3.27722 3.32451 3.83893 4.15117 4.31144 4.77896 4.82540 4.96803 5.09825 5.15365 5.30500 5.40800 5.55098 5.58618 5.64885 5.69334 5.76512 5.79288 5.92265 5.99717 6.02745 6.05258 6.07773 6.10096 6.17436 6.21334 6.23433 6.30584 6.32360 6.37682 6.43959 6.46533 6.59971 6.65953 6.71440 6.87505 6.91569 7.37597 7.50416 7.55274 7.64515 7.82857 8.19733 8.62204 9.28287 9.52957 10.11216 10.74880 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.005591 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.639660 B = 5007.127571 C = 5330.835769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.132 3.868 4 N -0.450 5.450 5 C -0.298 4.298 6 H 0.100 0.900 7 C 0.026 3.974 8 N -0.876 5.876 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 C 0.458 3.542 14 O -0.572 6.572 15 C 0.072 3.928 16 H 0.055 0.945 17 C -0.141 4.141 18 N -0.524 5.524 19 C 0.065 3.935 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.147 4.147 24 C 0.064 3.936 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.033 0.967 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -4.135 -11.208 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.008 3.992 4 N -0.169 5.169 5 C -0.426 4.426 6 H 0.117 0.883 7 C -0.175 4.175 8 N -0.517 5.517 9 Si 0.749 3.251 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.245 3.755 14 O -0.455 6.455 15 C -0.040 4.040 16 H 0.073 0.927 17 C -0.199 4.199 18 N -0.250 5.250 19 C -0.062 4.062 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.186 4.186 24 C -0.063 4.063 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.637 -3.931 -11.081 12.307 hybrid contribution -0.768 -0.163 0.922 1.211 sum -4.405 -4.094 -10.159 11.806 Atomic orbital electron populations 1.21603 0.97591 0.99850 1.00421 1.22039 0.93751 0.98508 1.02176 1.21433 0.80857 0.96706 1.00206 1.43774 1.05174 1.62665 1.05305 1.19661 0.95605 1.45248 0.82071 0.88265 1.25182 0.96541 0.96732 0.99072 1.70039 1.15218 1.39895 1.26516 0.86059 0.78785 0.79454 0.80763 1.20173 1.21119 1.20062 1.19758 0.87834 0.83535 0.84368 1.90504 1.14105 1.54591 1.86252 1.21624 0.95019 0.94240 0.93069 0.92690 1.21822 1.02210 0.96225 0.99598 1.61520 1.51507 1.11176 1.00779 1.21765 0.96374 0.99025 0.89084 1.21431 1.00313 0.94839 0.99234 1.20592 0.99867 0.97301 0.97802 1.20551 1.01643 0.98307 0.94903 1.21942 0.99919 0.98962 0.97793 1.21797 0.96936 0.87343 1.00255 0.94264 0.92667 0.94753 0.95457 0.87590 0.88094 0.95595 0.92493 0.92173 0.92647 0.91441 0.95398 0.91203 0.90563 0.91491 0.92535 0.92505 0.92084 0.92720 0.91437 0.91956 0.91345 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.91 37.16 0.37 -1.96 16 2 C -0.13 -2.59 5.40 -26.73 -0.14 -2.74 16 3 C 0.13 2.92 4.19 -4.04 -0.02 2.90 16 4 N -0.45 -11.36 2.64 -114.81 -0.30 -11.67 16 5 C -0.30 -8.19 9.44 -14.94 -0.14 -8.33 16 6 H 0.10 2.91 7.28 -52.49 -0.38 2.53 16 7 C 0.03 0.67 5.03 -17.47 -0.09 0.58 16 8 N -0.88 -21.92 8.19 55.50 0.45 -21.47 16 9 Si 0.92 20.58 29.59 -169.99 -5.03 15.55 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 C 0.46 11.25 5.17 -10.98 -0.06 11.19 16 14 O -0.57 -16.21 16.25 5.55 0.09 -16.12 16 15 C 0.07 1.40 1.58 -68.86 -0.11 1.29 16 16 H 0.06 1.06 4.40 -51.92 -0.23 0.83 16 17 C -0.14 -2.38 8.40 37.16 0.31 -2.07 16 18 N -0.52 -9.42 4.32 -229.31 -0.99 -10.41 16 19 C 0.06 0.91 3.82 -4.49 -0.02 0.90 16 20 C -0.12 -1.44 5.63 -27.33 -0.15 -1.59 16 21 C -0.12 -1.29 5.30 -29.42 -0.16 -1.45 16 22 C -0.12 -1.39 5.30 -29.41 -0.16 -1.54 16 23 C -0.15 -2.15 5.57 -27.32 -0.15 -2.30 16 24 C 0.06 1.13 4.94 -4.49 -0.02 1.11 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.54 6.45 -51.93 -0.33 0.21 16 29 H 0.11 2.52 6.10 -51.93 -0.32 2.20 16 30 H 0.10 2.42 5.98 -51.93 -0.31 2.11 16 31 H 0.03 0.52 6.19 -51.93 -0.32 0.20 16 32 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 33 H 0.06 1.00 7.37 -51.93 -0.38 0.62 16 34 H 0.05 0.77 6.56 -51.93 -0.34 0.43 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.03 0.39 6.47 -51.93 -0.34 0.05 16 37 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 38 H 0.08 1.01 7.08 -51.93 -0.37 0.64 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 42 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.94 6.61 -51.93 -0.34 0.60 16 46 H 0.07 1.16 6.59 -51.93 -0.34 0.82 16 47 H 0.07 1.62 6.61 -51.93 -0.34 1.28 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -28.83 341.05 -9.18 -38.00 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -8.01 Total: 4.98 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.53 Total: -4.01 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.84 Total: -43.54 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.09 Total: -16.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.83 -9.18 -38.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357791528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.712 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds