Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46783 * 2 1 4 4 N 1.46497 * 109.47209 * 181.76781 * 3 2 1 5 5 C 1.37101 * 120.00529 * 263.97798 * 4 3 2 6 6 H 1.08000 * 120.00204 * 191.54376 * 5 4 3 7 7 C 1.38954 * 119.99233 * 11.54332 * 5 4 3 8 8 N 1.31407 * 120.00226 * 15.72216 * 7 5 4 9 9 Si 1.86799 * 119.99418 * 195.71837 * 7 5 4 10 10 H 1.48507 * 109.47279 * 90.00214 * 9 7 5 11 11 H 1.48499 * 109.47107 * 210.00085 * 9 7 5 12 12 H 1.48506 * 109.47528 * 330.00219 * 9 7 5 13 13 C 1.34781 * 119.99769 * 83.97186 * 4 3 2 14 14 O 1.21285 * 120.00050 * 4.58879 * 13 4 3 15 15 C 1.50703 * 119.99968 * 184.58421 * 13 4 3 16 16 H 1.09001 * 109.47209 * 49.54821 * 15 13 4 17 17 C 1.53003 * 109.47181 * 289.54926 * 15 13 4 18 18 N 1.46895 * 109.47252 * 169.54880 * 15 13 4 19 19 C 1.47998 * 111.00042 * 61.27753 * 18 15 13 20 20 C 1.50453 * 112.83244 * 84.83701 * 19 18 15 21 21 C 1.54314 * 108.50200 * 93.72283 * 20 19 18 22 22 C 1.45874 * 112.18218 * 281.48590 * 21 20 19 23 23 C 1.54305 * 112.19658 * 61.11483 * 22 21 20 24 24 C 1.48001 * 111.00171 * 190.00330 * 18 15 13 25 25 H 1.09001 * 109.46509 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47340 * 300.00292 * 1 2 3 27 27 H 1.09003 * 109.46949 * 60.00131 * 1 2 3 28 28 H 1.08996 * 109.47340 * 239.99708 * 2 1 3 29 29 H 1.09001 * 109.47113 * 119.99345 * 2 1 3 30 30 H 1.09004 * 109.47364 * 61.77009 * 3 2 1 31 31 H 1.09000 * 109.47014 * 301.77125 * 3 2 1 32 32 H 0.97008 * 119.99675 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46968 * 67.40130 * 17 15 13 34 34 H 1.09004 * 109.46714 * 187.40001 * 17 15 13 35 35 H 1.08995 * 109.47341 * 307.40173 * 17 15 13 36 36 H 1.09000 * 108.81418 * 323.97449 * 19 18 15 37 37 H 1.09002 * 108.81316 * 205.69941 * 19 18 15 38 38 H 1.09002 * 109.62793 * 334.02548 * 20 19 18 39 39 H 1.08996 * 109.63091 * 213.42989 * 20 19 18 40 40 H 1.09005 * 108.93740 * 42.18299 * 21 20 19 41 41 H 1.08998 * 108.93958 * 160.78722 * 21 20 19 42 42 H 1.09002 * 108.93668 * 181.81449 * 22 21 20 43 43 H 1.09004 * 108.93987 * 300.41555 * 22 21 20 44 44 H 1.09001 * 109.63143 * 41.15254 * 23 22 21 45 45 H 1.09000 * 109.63657 * 161.74659 * 23 22 21 46 46 H 1.08996 * 108.81352 * 70.48309 * 24 18 15 47 47 H 1.09001 * 108.72143 * 312.13893 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5043 1.4428 -0.0426 5 6 4.2240 1.5554 1.1189 6 1 5.2869 1.7429 1.0796 7 6 3.5857 1.4283 2.3466 8 7 2.3830 0.9028 2.4106 9 14 4.4376 2.0043 3.9060 10 1 4.0994 3.4283 4.1578 11 1 3.9831 1.1775 5.0527 12 1 5.9076 1.8653 3.7474 13 6 4.1441 1.3323 -1.2237 14 8 3.5103 1.3165 -2.2576 15 6 5.6472 1.2286 -1.2597 16 1 5.9753 0.4613 -0.5585 17 6 6.2608 2.5741 -0.8672 18 7 6.0809 0.8699 -2.6165 19 6 5.6786 1.9063 -3.5934 20 6 6.6628 3.0411 -3.6792 21 6 7.6545 2.7438 -4.8235 22 6 8.6767 1.7804 -4.4301 23 6 8.0717 0.4170 -4.0352 24 6 7.5202 0.5258 -2.6397 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.7028 1.9471 0.9054 31 1 1.6509 1.9654 -0.8737 32 1 1.9373 0.8145 3.2677 33 1 6.0481 2.7781 0.1823 34 1 7.3396 2.5396 -1.0192 35 1 5.8318 3.3631 -1.4848 36 1 4.7069 2.3053 -3.3025 37 1 5.5869 1.4456 -4.5770 38 1 7.2053 3.1272 -2.7377 39 1 6.1327 3.9707 -3.8862 40 1 7.1027 2.3461 -5.6754 41 1 8.1400 3.6731 -5.1213 42 1 9.3644 1.6343 -5.2631 43 1 9.2317 2.1803 -3.5814 44 1 7.2699 0.1580 -4.7267 45 1 8.8461 -0.3496 -4.0642 46 1 7.6620 -0.4273 -2.1303 47 1 8.0729 1.2966 -2.1025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357791530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -14.179647 kcal Electronic energy + Delta-G solvation = -24517.873176 eV Core-core repulsion = 21315.424186 eV Total energy + Delta-G solvation = -3202.448991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.82959 -38.08607 -35.33735 -34.24836 -32.28307 -31.86804 -31.49373 -29.63159 -26.33876 -25.77162 -24.73271 -24.46512 -22.24647 -20.42654 -20.28775 -19.28655 -18.88957 -16.91048 -16.50480 -15.62879 -15.08278 -14.59322 -14.32006 -14.22974 -13.74553 -13.59880 -13.48346 -13.08799 -12.94378 -12.72243 -12.49541 -12.13479 -11.99778 -11.73648 -11.64369 -11.35653 -11.26404 -11.15287 -10.88459 -10.85033 -10.64819 -10.45459 -10.39259 -10.37964 -10.24247 -10.10620 -9.80875 -9.74196 -9.50120 -8.77612 -8.10638 -7.67655 -7.47987 -6.30416 -3.87173 3.08813 3.19150 3.20082 3.91011 4.05214 4.30662 4.83662 4.87037 4.99126 5.07671 5.16494 5.39545 5.49406 5.67158 5.69144 5.76569 5.78826 5.91464 5.93948 6.05149 6.11528 6.17319 6.18988 6.22186 6.24280 6.28371 6.35231 6.39402 6.45140 6.51068 6.54963 6.60464 6.71012 6.78074 6.93289 6.97491 7.09057 7.15473 7.35215 7.53896 7.74258 7.80591 7.83424 7.88200 8.49603 9.10043 9.60650 10.00825 10.63933 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.005585 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.887247 B = 5012.058503 C = 5918.748802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.140 3.860 4 N -0.441 5.441 5 C -0.335 4.335 6 H 0.106 0.894 7 C 0.033 3.967 8 N -0.860 5.860 9 Si 0.918 3.082 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.465 3.535 14 O -0.593 6.593 15 C 0.086 3.914 16 H 0.093 0.907 17 C -0.186 4.186 18 N -0.527 5.527 19 C 0.050 3.950 20 C -0.160 4.160 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.118 4.118 24 C 0.060 3.940 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 1.876 -5.860 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.017 3.983 4 N -0.159 5.159 5 C -0.462 4.462 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.499 5.499 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.253 3.747 14 O -0.479 6.479 15 C -0.025 4.025 16 H 0.111 0.889 17 C -0.244 4.244 18 N -0.251 5.251 19 C -0.077 4.077 20 C -0.199 4.199 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.068 4.068 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.236 1.410 -6.319 9.710 hybrid contribution 0.912 0.915 1.191 1.758 sum 8.149 2.326 -5.128 9.905 Atomic orbital electron populations 1.21583 0.97764 0.99648 1.00311 1.21758 0.93559 0.98608 1.01590 1.21326 0.79801 0.96720 1.00436 1.43774 1.05679 1.61470 1.04973 1.19947 0.94437 1.48608 0.83212 0.87708 1.25226 0.96410 0.96310 0.99162 1.70109 1.13897 1.40238 1.25633 0.86074 0.79415 0.78760 0.81282 1.20436 1.20952 1.19614 1.19768 0.88716 0.82400 0.83823 1.90427 1.67947 1.56797 1.32720 1.21260 0.94597 0.96729 0.89953 0.88883 1.22692 0.99454 0.98341 1.03954 1.61648 1.14711 1.43585 1.05134 1.22137 0.99924 0.89819 0.95785 1.22357 0.98487 0.99970 0.99102 1.20573 0.97538 0.98561 0.98830 1.20580 0.98123 0.95852 1.00904 1.21398 1.00200 0.96541 0.97467 1.21777 0.88278 1.00056 0.96648 0.94417 0.93050 0.94487 0.95011 0.88948 0.88041 0.95053 0.92286 0.90015 0.93068 0.92346 0.87583 0.92271 0.90746 0.92133 0.92326 0.93089 0.92722 0.92592 0.90682 0.91644 0.91679 0.94932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.91 37.16 0.37 -2.26 16 2 C -0.12 -2.70 5.71 -26.73 -0.15 -2.86 16 3 C 0.14 3.42 4.56 -4.04 -0.02 3.40 16 4 N -0.44 -10.91 2.64 -114.81 -0.30 -11.21 16 5 C -0.33 -8.09 8.65 -14.93 -0.13 -8.22 16 6 H 0.11 2.38 4.40 -52.49 -0.23 2.15 16 7 C 0.03 0.79 5.10 -17.47 -0.09 0.70 16 8 N -0.86 -21.09 8.15 55.50 0.45 -20.64 16 9 Si 0.92 18.81 29.58 -169.99 -5.03 13.79 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.46 11.13 6.61 -10.98 -0.07 11.06 16 14 O -0.59 -15.41 13.37 5.55 0.07 -15.33 16 15 C 0.09 1.73 1.90 -68.86 -0.13 1.60 16 16 H 0.09 1.92 7.65 -51.93 -0.40 1.52 16 17 C -0.19 -3.28 7.13 37.16 0.26 -3.02 16 18 N -0.53 -9.65 4.55 -229.30 -1.04 -10.70 16 19 C 0.05 0.89 4.17 -4.49 -0.02 0.87 16 20 C -0.16 -2.33 4.45 -27.31 -0.12 -2.45 16 21 C -0.12 -1.44 5.30 -29.42 -0.16 -1.59 16 22 C -0.12 -1.34 5.30 -29.42 -0.16 -1.50 16 23 C -0.12 -1.49 5.63 -27.32 -0.15 -1.64 16 24 C 0.06 0.89 4.91 -4.49 -0.02 0.87 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 2.31 6.30 -51.93 -0.33 1.99 16 30 H 0.10 2.56 5.75 -51.93 -0.30 2.27 16 31 H 0.03 0.78 7.55 -51.93 -0.39 0.38 16 32 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 33 H 0.08 1.51 5.42 -51.93 -0.28 1.23 16 34 H 0.05 0.79 5.39 -51.93 -0.28 0.51 16 35 H 0.06 1.05 6.24 -51.93 -0.32 0.72 16 36 H 0.11 2.24 5.06 -51.93 -0.26 1.98 16 37 H 0.06 1.03 6.59 -51.93 -0.34 0.69 16 38 H 0.07 1.10 4.05 -51.93 -0.21 0.89 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.64 7.52 -51.93 -0.39 0.25 16 44 H 0.07 1.03 7.08 -51.93 -0.37 0.67 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.03 0.47 4.74 -51.93 -0.25 0.23 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -26.28 331.78 -9.12 -35.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.68 Total: 8.76 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.59 Total: -5.06 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.89 Total: -42.55 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.07 Total: -15.33 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.28 -9.12 -35.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357791530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.215 kcal (2) G-P(sol) polarization free energy of solvation -26.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds