Wall clock time and date at job start Tue Mar 31 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 N 1.46495 * 109.47418 * 179.97438 * 3 2 1 5 5 C 1.34780 * 120.00447 * 89.99497 * 4 3 2 6 6 O 1.21582 * 120.00353 * 186.00907 * 5 4 3 7 7 N 1.34777 * 119.99377 * 6.01507 * 5 4 3 8 8 C 1.46504 * 119.99590 * 174.70416 * 7 5 4 9 9 C 1.53004 * 109.47017 * 180.27430 * 8 7 5 10 10 C 1.53004 * 109.46972 * 300.00267 * 9 8 7 11 11 C 1.52995 * 109.46841 * 60.00034 * 9 8 7 12 12 C 1.52994 * 109.47150 * 180.02562 * 9 8 7 13 13 C 1.50694 * 109.47381 * 180.02562 * 12 9 8 14 14 H 1.07999 * 120.00055 * 359.97438 * 13 12 9 15 15 C 1.37873 * 120.00121 * 180.02562 * 13 12 9 16 16 N 1.31515 * 120.00433 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 120.00003 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46846 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47306 * 119.99474 * 17 15 13 20 20 H 1.48501 * 109.46747 * 239.99738 * 17 15 13 21 21 C 1.46504 * 119.99982 * 270.00062 * 4 3 2 22 22 C 1.52998 * 117.50235 * 196.48225 * 21 4 3 23 23 C 1.53003 * 117.49962 * 127.81882 * 21 4 3 24 24 H 1.09008 * 109.47183 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47686 * 299.99997 * 1 2 3 26 26 H 1.09006 * 109.47338 * 60.00806 * 1 2 3 27 27 H 1.08999 * 109.47686 * 240.00003 * 2 1 3 28 28 H 1.08999 * 109.46943 * 119.99950 * 2 1 3 29 29 H 1.08999 * 109.46800 * 59.99461 * 3 2 1 30 30 H 1.08999 * 109.47133 * 299.99833 * 3 2 1 31 31 H 0.97001 * 120.00169 * 354.98193 * 7 5 4 32 32 H 1.08996 * 109.46824 * 300.27385 * 8 7 5 33 33 H 1.09003 * 109.47033 * 60.27653 * 8 7 5 34 34 H 1.08997 * 109.47442 * 60.00121 * 10 9 8 35 35 H 1.09003 * 109.47201 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47206 * 299.99855 * 10 9 8 37 37 H 1.08996 * 109.47447 * 60.00310 * 11 9 8 38 38 H 1.09003 * 109.47034 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47392 * 299.99768 * 11 9 8 40 40 H 1.09002 * 109.47137 * 299.99980 * 12 9 8 41 41 H 1.09003 * 109.47227 * 60.00023 * 12 9 8 42 42 H 0.96998 * 120.00196 * 180.02562 * 16 15 13 43 43 H 1.09002 * 115.54551 * 342.15123 * 21 4 3 44 44 H 1.09006 * 117.49249 * 359.97438 * 22 21 4 45 45 H 1.08997 * 117.50172 * 145.01838 * 22 21 4 46 46 H 1.09004 * 117.49771 * 214.97845 * 23 21 4 47 47 H 1.08995 * 117.49878 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1794 1.4423 -1.1663 6 8 5.3902 1.3321 -1.1686 7 7 3.5115 1.5643 -2.3305 8 6 4.2506 1.6808 -3.5901 9 6 3.2625 1.8128 -4.7509 10 6 2.3641 0.5752 -4.7991 11 6 2.4010 3.0607 -4.5477 12 6 4.0342 1.9338 -6.0663 13 6 3.0611 2.0645 -7.2095 14 1 1.9984 2.0611 -7.0171 15 6 3.5274 2.1873 -8.5012 16 7 4.8215 2.1909 -8.7357 17 14 2.3210 2.3499 -9.9182 18 1 0.9326 2.3188 -9.3923 19 1 2.5552 3.6361 -10.6226 20 1 2.5162 1.2236 -10.8661 21 6 4.2369 1.4428 1.2697 22 6 5.7171 1.8278 1.2315 23 6 5.3108 0.3707 1.4660 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.6765 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.5416 1.5791 -2.3341 32 1 4.8905 2.5625 -3.5557 33 1 4.8643 0.7917 -3.7348 34 1 1.8143 0.4886 -3.8620 35 1 1.6605 0.6690 -5.6263 36 1 2.9779 -0.3139 -4.9438 37 1 3.0409 3.9424 -4.5133 38 1 1.6973 3.1551 -5.3748 39 1 1.8511 2.9741 -3.6106 40 1 4.6745 2.8153 -6.0322 41 1 4.6477 1.0445 -6.2108 42 1 5.1495 2.2777 -9.6444 43 1 3.6608 1.7443 2.1445 44 1 6.1464 2.0806 0.2619 45 1 6.1150 2.3824 2.0813 46 1 5.4415 -0.0327 2.4702 47 1 5.4723 -0.3349 0.6512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358697511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:36 Heat of formation + Delta-G solvation = -12.403260 kcal Electronic energy + Delta-G solvation = -23403.954792 eV Core-core repulsion = 20201.582832 eV Total energy + Delta-G solvation = -3202.371961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53072 -37.73526 -36.28322 -35.71172 -33.34355 -32.37993 -31.63542 -27.13571 -26.51099 -26.45025 -25.96109 -23.37102 -22.31481 -22.14009 -21.86404 -19.81346 -18.30367 -17.44865 -16.63669 -16.19321 -15.47440 -15.31004 -14.88508 -14.51013 -14.25407 -14.02678 -13.90662 -13.33226 -13.08941 -13.04116 -12.76322 -12.40084 -12.26619 -12.06606 -12.06092 -11.72935 -11.35746 -11.13339 -11.04032 -11.03193 -10.90331 -10.83120 -10.63968 -10.39189 -10.31245 -10.23173 -9.87230 -9.54654 -9.18338 -8.91161 -8.71632 -8.35817 -8.26329 -5.99594 -4.00850 2.66847 3.26808 3.30189 3.38328 3.40517 3.91220 4.07401 4.45509 4.61732 4.74955 4.87763 4.95137 4.99628 5.14523 5.17206 5.33768 5.36052 5.48612 5.51512 5.57138 5.65259 5.75110 5.75854 5.79083 5.85070 6.03154 6.09615 6.17982 6.22953 6.27738 6.41636 6.42216 6.59164 6.63091 6.74029 6.89561 7.00561 7.07489 7.07879 7.15761 7.65205 7.77432 7.99192 8.12291 8.41139 8.79579 9.04219 9.62339 11.11901 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.003843 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.233391 B = 7283.321736 C = 8120.696472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.608 5.608 5 C 0.703 3.297 6 O -0.584 6.584 7 N -0.736 5.736 8 C 0.145 3.855 9 C -0.072 4.072 10 C -0.126 4.126 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.510 4.510 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.894 5.894 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.088 3.912 22 C -0.192 4.192 23 C -0.189 4.189 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.393 0.607 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.259 0.741 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 -2.065 20.416 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C -0.010 4.010 4 N -0.342 5.342 5 C 0.405 3.595 6 O -0.463 6.463 7 N -0.393 5.393 8 C 0.022 3.978 9 C -0.073 4.073 10 C -0.183 4.183 11 C -0.183 4.183 12 C -0.001 4.001 13 C -0.549 4.549 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.017 4.017 22 C -0.230 4.230 23 C -0.228 4.228 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.230 0.770 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.069 0.931 43 H 0.142 0.858 44 H 0.158 0.842 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.357 -2.099 20.226 21.305 hybrid contribution -1.093 0.031 -0.830 1.373 sum -7.450 -2.068 19.396 20.880 Atomic orbital electron populations 1.21715 0.95001 1.02141 1.01997 1.21996 0.96138 0.97126 1.03085 1.21569 0.79398 0.96998 1.03002 1.46527 1.05574 1.78210 1.03938 1.16001 0.85250 0.77931 0.80280 1.90745 1.12083 1.57669 1.85790 1.45603 1.09992 1.78005 1.05668 1.21499 0.94280 1.01458 0.80573 1.20908 0.95396 0.94995 0.95953 1.21749 0.99503 0.97384 0.99662 1.21750 0.99676 0.97408 0.99474 1.19088 0.94958 0.97449 0.88634 1.21218 0.92990 1.49530 0.91126 0.92218 1.25012 0.94946 0.95608 0.98918 1.69975 1.12268 1.50688 1.20427 0.86603 0.81447 0.77599 0.82734 1.19810 1.21135 1.21141 1.21409 0.89066 1.05195 0.86024 1.23895 0.96040 0.97400 1.05624 1.23257 1.04047 0.93313 1.02135 0.92373 0.92634 0.92319 0.91520 0.91434 0.90217 0.90718 0.76972 0.92093 0.91943 0.95431 0.91465 0.93357 0.93343 0.91440 0.95495 0.96319 0.96304 0.93098 0.85798 0.84240 0.89728 0.89226 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.14 -1.23 6.26 -26.73 -0.17 -1.40 16 3 C 0.11 1.02 5.32 -4.04 -0.02 1.00 16 4 N -0.61 -7.40 2.84 -171.80 -0.49 -7.88 16 5 C 0.70 11.10 8.07 -86.92 -0.70 10.40 16 6 O -0.58 -11.08 12.09 5.29 0.06 -11.02 16 7 N -0.74 -11.15 4.83 -65.22 -0.32 -11.47 16 8 C 0.15 2.62 4.57 -4.04 -0.02 2.60 16 9 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 10 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 11 C -0.13 -2.20 8.05 37.16 0.30 -1.91 16 12 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 13 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 14 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.09 0.97 6.62 -67.93 -0.45 0.52 16 22 C -0.19 -2.39 9.63 -26.69 -0.26 -2.65 16 23 C -0.19 -2.20 9.88 -26.69 -0.26 -2.47 16 24 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 30 H 0.07 0.67 6.21 -51.93 -0.32 0.34 16 31 H 0.39 5.17 3.84 -40.82 -0.16 5.01 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 35 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 39 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.12 1.01 8.09 -51.93 -0.42 0.59 16 44 H 0.14 2.25 5.22 -52.10 -0.27 1.97 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.10 1.38 7.59 -51.93 -0.39 0.99 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -30.43 363.72 -9.32 -39.75 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.31 Total: 4.14 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.47 Total: -9.46 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.07 Total: -45.02 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.06 Total: -11.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.43 -9.32 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358697511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.349 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds