Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 H 1.08996 * 109.87566 * 53.81208 * 3 2 1 5 5 C 1.54320 * 109.87919 * 292.63664 * 3 2 1 6 6 C 1.55157 * 102.94405 * 218.38913 * 5 3 2 7 7 C 1.54692 * 101.67652 * 35.33605 * 6 5 3 8 8 N 1.47022 * 109.88043 * 174.83184 * 3 2 1 9 9 C 1.34770 * 125.64589 * 298.31682 * 8 3 2 10 10 O 1.21589 * 120.00304 * 354.97698 * 9 8 3 11 11 N 1.34781 * 120.00055 * 174.96958 * 9 8 3 12 12 C 1.46493 * 120.00434 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47685 * 180.02562 * 12 11 9 14 14 C 1.53008 * 109.46914 * 59.99701 * 13 12 11 15 15 C 1.53006 * 109.46923 * 300.00347 * 13 12 11 16 16 C 1.52998 * 109.47615 * 180.02562 * 13 12 11 17 17 C 1.50699 * 109.47130 * 179.97438 * 16 13 12 18 18 H 1.07996 * 120.00196 * 0.02562 * 17 16 13 19 19 C 1.37874 * 119.99753 * 179.97438 * 17 16 13 20 20 N 1.31507 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99924 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46897 * 269.99980 * 21 19 17 23 23 H 1.48499 * 109.47131 * 150.00168 * 21 19 17 24 24 H 1.48500 * 109.46798 * 29.99952 * 21 19 17 25 25 H 1.09007 * 109.47332 * 185.13098 * 1 2 3 26 26 H 1.09004 * 109.47408 * 305.12924 * 1 2 3 27 27 H 1.08999 * 109.47676 * 65.12830 * 1 2 3 28 28 H 1.08998 * 109.46788 * 240.00334 * 2 1 3 29 29 H 1.09001 * 109.47310 * 119.99800 * 2 1 3 30 30 H 1.09000 * 110.72593 * 336.75462 * 5 3 2 31 31 H 1.09009 * 110.72085 * 100.03126 * 5 3 2 32 32 H 1.08992 * 111.00781 * 153.57575 * 6 5 3 33 33 H 1.09006 * 111.00564 * 277.39603 * 6 5 3 34 34 H 1.08991 * 110.39593 * 204.36362 * 7 6 5 35 35 H 1.08999 * 110.23484 * 82.11104 * 7 6 5 36 36 H 0.97006 * 119.99530 * 0.02562 * 11 9 8 37 37 H 1.08999 * 109.47006 * 60.00395 * 12 11 9 38 38 H 1.09004 * 109.47479 * 300.00541 * 12 11 9 39 39 H 1.09002 * 109.46468 * 180.02562 * 14 13 12 40 40 H 1.08991 * 109.47147 * 300.00473 * 14 13 12 41 41 H 1.08995 * 109.46618 * 60.01003 * 14 13 12 42 42 H 1.08999 * 109.46868 * 299.99606 * 15 13 12 43 43 H 1.09001 * 109.46827 * 59.99377 * 15 13 12 44 44 H 1.08994 * 109.47345 * 179.97438 * 15 13 12 45 45 H 1.08999 * 109.47316 * 59.99695 * 16 13 12 46 46 H 1.09001 * 109.46755 * 299.99941 * 16 13 12 47 47 H 0.97005 * 120.00053 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5928 1.9937 0.8273 5 6 1.6882 2.1235 -1.3394 6 6 2.9439 2.9872 -1.6306 7 6 4.0761 2.0901 -1.0771 8 7 3.5048 1.4550 0.1245 9 6 4.2085 0.9714 1.1672 10 8 3.6285 0.5547 2.1513 11 7 5.5553 0.9493 1.1191 12 6 6.3203 0.4231 2.2522 13 6 7.8161 0.5125 1.9433 14 6 8.2008 1.9737 1.7028 15 6 8.1283 -0.3097 0.6913 16 6 8.6151 -0.0377 3.1264 17 6 10.0884 0.0497 2.8218 18 1 10.4216 0.4574 1.8789 19 6 11.0109 -0.3897 3.7474 20 7 10.6052 -0.8856 4.8959 21 14 12.8373 -0.2806 3.3702 22 1 13.2804 -1.5312 2.7033 23 1 13.5940 -0.0991 4.6349 24 1 13.0890 0.8751 2.4724 25 1 -0.3634 -1.0236 0.0919 26 1 -0.3634 0.5913 0.8405 27 1 -0.3634 0.4322 -0.9323 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.5412 1.3803 -2.1231 31 1 0.8042 2.7522 -1.2321 32 1 3.0635 3.1544 -2.7009 33 1 2.9005 3.9337 -1.0917 34 1 4.9435 2.6940 -0.8110 35 1 4.3507 1.3333 -1.8118 36 1 6.0180 1.2820 0.3341 37 1 6.0460 -0.6177 2.4237 38 1 6.0982 1.0091 3.1441 39 1 9.2664 2.0372 1.4823 40 1 7.6317 2.3652 0.8598 41 1 7.9785 2.5594 2.5947 42 1 7.8543 -1.3507 0.8626 43 1 7.5591 0.0819 -0.1518 44 1 9.1938 -0.2458 0.4709 45 1 8.3409 -1.0787 3.2974 46 1 8.3927 0.5477 4.0186 47 1 9.6569 -0.9419 5.0920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358710157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = -59.694360 kcal Electronic energy + Delta-G solvation = -23205.816888 eV Core-core repulsion = 20001.394231 eV Total energy + Delta-G solvation = -3204.422657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42354 -38.27684 -36.88987 -34.10325 -33.28596 -32.19455 -31.32856 -28.08241 -26.67295 -26.57092 -26.17654 -24.07280 -22.82760 -22.32400 -20.95377 -19.59920 -18.71650 -17.71396 -16.63065 -16.43228 -15.57247 -15.02604 -14.76522 -14.49721 -14.11994 -13.80930 -13.71805 -13.53066 -13.38765 -13.18563 -12.78858 -12.69083 -12.37971 -12.13306 -11.77990 -11.71702 -11.53135 -11.42879 -11.18881 -11.15445 -11.00432 -10.98046 -10.68319 -10.63728 -10.22300 -10.10450 -9.97559 -9.94906 -9.44188 -8.89773 -8.46127 -8.43198 -8.30006 -6.31630 -4.00641 2.68595 3.36783 3.43880 3.47148 3.62426 4.05747 4.27486 4.41852 4.56116 4.57793 4.83499 5.01359 5.06110 5.19848 5.22986 5.32321 5.42473 5.42582 5.46588 5.48743 5.58298 5.59256 5.67291 5.71395 5.85023 5.87365 6.02151 6.11708 6.12268 6.16734 6.20857 6.34740 6.38989 6.54463 6.57187 6.76763 6.99333 7.00323 7.04193 7.15120 7.37066 7.51760 8.12720 8.23940 8.49399 8.78154 8.91843 9.70411 11.08403 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034804 B = 0.003292 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.311653 B = 8503.915785 C = 8965.061047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.157 3.843 4 H 0.073 0.927 5 C -0.127 4.127 6 C -0.132 4.132 7 C 0.098 3.902 8 N -0.638 5.638 9 C 0.719 3.281 10 O -0.590 6.590 11 N -0.735 5.735 12 C 0.146 3.854 13 C -0.066 4.066 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.023 3.977 17 C -0.591 4.591 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 1.068 2.932 22 H -0.289 1.289 23 H -0.285 1.285 24 H -0.289 1.289 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.393 0.607 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.028 0.972 44 H 0.068 0.932 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.949 7.048 -15.947 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.091 0.909 5 C -0.165 4.165 6 C -0.170 4.170 7 C -0.025 4.025 8 N -0.378 5.378 9 C 0.421 3.579 10 O -0.468 6.468 11 N -0.391 5.391 12 C 0.023 3.977 13 C -0.066 4.066 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.014 4.014 17 C -0.629 4.629 18 H 0.072 0.928 19 C -0.191 4.191 20 N -0.551 5.551 21 Si 0.897 3.103 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.216 1.216 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.791 6.380 -14.499 22.367 hybrid contribution -1.251 0.460 -1.010 1.672 sum -17.042 6.840 -15.509 24.037 Atomic orbital electron populations 1.21706 0.95289 1.01827 1.01580 1.21918 0.95939 0.96508 1.03151 1.21407 0.79406 0.96367 0.97493 0.90937 1.22736 0.98199 0.99058 0.96489 1.22714 0.94341 0.98393 1.01543 1.22209 0.97068 0.95762 0.87507 1.47673 1.06701 1.64068 1.19321 1.15513 0.81777 0.78762 0.81896 1.90903 1.69601 1.54342 1.31953 1.45380 1.03995 1.67798 1.21908 1.21482 0.90706 0.98435 0.87113 1.20769 0.91372 0.95995 0.98479 1.21735 1.01915 0.95203 0.99329 1.21736 1.02006 0.99058 0.95388 1.19209 0.95389 0.95178 0.91650 1.21997 0.91005 1.45297 1.04637 0.92846 1.25781 1.05873 0.93914 0.93490 1.70735 1.18552 1.42665 1.23189 0.83547 0.74965 0.76153 0.75592 1.21595 1.21123 1.21567 0.92627 0.92596 0.92816 0.92113 0.90400 0.90401 0.90067 0.89836 0.90569 0.90954 0.91662 0.77140 0.92121 0.92145 0.91320 0.95310 0.93470 0.93471 0.95272 0.91338 0.97279 0.97276 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.68 37.16 0.36 -0.87 16 2 C -0.14 -1.49 5.41 -26.73 -0.14 -1.64 16 3 C 0.16 1.68 2.87 -66.95 -0.19 1.49 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.13 -0.89 5.71 -24.90 -0.14 -1.03 16 6 C -0.13 -0.88 7.07 -24.70 -0.17 -1.05 16 7 C 0.10 0.88 6.46 -2.64 -0.02 0.86 16 8 N -0.64 -8.04 3.07 -168.83 -0.52 -8.56 16 9 C 0.72 11.94 8.21 -86.92 -0.71 11.23 16 10 O -0.59 -12.09 15.52 5.29 0.08 -12.01 16 11 N -0.74 -11.60 4.92 -65.23 -0.32 -11.92 16 12 C 0.15 2.72 4.56 -4.05 -0.02 2.70 16 13 C -0.07 -1.28 0.54 -154.50 -0.08 -1.36 16 14 C -0.12 -2.25 8.05 37.16 0.30 -1.95 16 15 C -0.12 -2.26 8.05 37.16 0.30 -1.96 16 16 C 0.02 0.57 3.35 -27.88 -0.09 0.48 16 17 C -0.59 -15.95 7.65 -34.44 -0.26 -16.22 16 18 H 0.05 1.40 5.68 -52.49 -0.30 1.10 16 19 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 20 N -0.91 -27.92 13.65 55.43 0.76 -27.17 16 21 Si 1.07 25.05 29.90 -169.99 -5.08 19.97 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 28 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 29 H 0.08 1.12 6.88 -51.93 -0.36 0.77 16 30 H 0.08 0.49 7.76 -51.93 -0.40 0.09 16 31 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.63 7.51 -51.93 -0.39 0.24 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.39 5.35 4.77 -40.82 -0.19 5.16 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 40 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 44 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 45 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 46 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 47 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -32.28 359.48 -9.08 -41.36 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.43 Total: 1.97 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.98 Total: -9.06 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.08 Total: -47.65 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.28 -9.08 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358710157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.332 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds