Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46820 * 2 1 4 4 H 1.08998 * 109.87185 * 306.47840 * 3 2 1 5 5 C 1.54324 * 109.88559 * 67.49731 * 3 2 1 6 6 C 1.55405 * 102.82519 * 141.51931 * 5 3 2 7 7 C 1.54908 * 101.66909 * 324.65971 * 6 5 3 8 8 N 1.47023 * 109.87953 * 185.46600 * 3 2 1 9 9 C 1.34780 * 125.65019 * 61.60386 * 8 3 2 10 10 O 1.21582 * 119.99590 * 5.10354 * 9 8 3 11 11 N 1.34776 * 119.99867 * 185.09857 * 9 8 3 12 12 C 1.46502 * 119.99739 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47222 * 299.99916 * 13 12 11 15 15 C 1.53001 * 109.46962 * 60.00231 * 13 12 11 16 16 C 1.52999 * 109.46703 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46754 * 179.97438 * 16 13 12 18 18 H 1.07999 * 120.00116 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99935 * 179.97438 * 17 16 13 20 20 N 1.31507 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99871 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47002 * 60.00104 * 21 19 17 23 23 H 1.48495 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47183 * 300.00452 * 21 19 17 25 25 H 1.08999 * 109.47138 * 294.98815 * 1 2 3 26 26 H 1.08996 * 109.46933 * 174.99130 * 1 2 3 27 27 H 1.09002 * 109.46933 * 54.98710 * 1 2 3 28 28 H 1.09000 * 109.47165 * 119.99441 * 2 1 3 29 29 H 1.08999 * 109.47228 * 239.99759 * 2 1 3 30 30 H 1.08998 * 110.71712 * 259.96897 * 5 3 2 31 31 H 1.08993 * 110.71940 * 23.24532 * 5 3 2 32 32 H 1.09005 * 111.03094 * 206.52785 * 6 5 3 33 33 H 1.08995 * 110.92552 * 82.75054 * 6 5 3 34 34 H 1.09003 * 110.36595 * 278.09099 * 7 6 5 35 35 H 1.08992 * 110.45968 * 155.81742 * 7 6 5 36 36 H 0.96996 * 120.00167 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47132 * 300.00356 * 12 11 9 38 38 H 1.09007 * 109.47032 * 60.00240 * 12 11 9 39 39 H 1.08998 * 109.46858 * 59.99821 * 14 13 12 40 40 H 1.09001 * 109.47105 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47204 * 300.00082 * 14 13 12 42 42 H 1.08995 * 109.47418 * 59.99902 * 15 13 12 43 43 H 1.09001 * 109.46950 * 179.97438 * 15 13 12 44 44 H 1.09001 * 109.46855 * 299.99535 * 15 13 12 45 45 H 1.08995 * 109.47160 * 299.99780 * 16 13 12 46 46 H 1.08997 * 109.47425 * 60.00100 * 16 13 12 47 47 H 0.96996 * 120.00235 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5888 1.9950 -0.8242 5 6 1.6912 2.1226 1.3407 6 6 2.9519 2.9845 1.6285 7 6 4.0816 2.0833 1.0706 8 7 3.5042 1.4552 -0.1317 9 6 4.2030 0.9720 -1.1780 10 8 3.6183 0.5570 -2.1599 11 7 5.5499 0.9489 -1.1358 12 6 6.3095 0.4231 -2.2729 13 6 7.8067 0.5098 -1.9699 14 6 8.1945 1.9701 -1.7290 15 6 8.1227 -0.3147 -0.7204 16 6 8.5999 -0.0387 -3.1577 17 6 10.0746 0.0473 -2.8596 18 1 10.4123 0.4523 -1.9170 19 6 10.9928 -0.3920 -3.7897 20 7 10.5816 -0.8855 -4.9372 21 14 12.8208 -0.2847 -3.4205 22 1 13.1285 -1.0842 -2.2073 23 1 13.5907 -0.8183 -4.5727 24 1 13.1963 1.1329 -3.1873 25 1 -0.3633 0.4341 0.9315 26 1 -0.3633 -1.0237 -0.0897 27 1 -0.3633 0.5897 -0.8417 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 0.8071 2.7513 1.2357 31 1 1.5460 1.3788 2.1241 32 1 3.0767 3.1499 2.6987 33 1 2.9067 3.9319 1.0915 34 1 4.3559 1.3225 1.8015 35 1 4.9515 2.6836 0.8045 36 1 6.0164 1.2797 -0.3523 37 1 6.0334 -0.6174 -2.4443 38 1 6.0839 1.0103 -3.1632 39 1 7.6294 2.3613 -0.8830 40 1 9.2613 2.0320 -1.5136 41 1 7.9694 2.5575 -2.6191 42 1 7.8464 -1.3550 -0.8921 43 1 9.1895 -0.2533 -0.5049 44 1 7.5576 0.0765 0.1255 45 1 8.3236 -1.0789 -3.3298 46 1 8.3746 0.5490 -4.0476 47 1 11.2274 -1.1949 -5.5914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358710159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = -55.713747 kcal Electronic energy + Delta-G solvation = -23165.686263 eV Core-core repulsion = 19961.436219 eV Total energy + Delta-G solvation = -3204.250044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36348 -38.19357 -36.78094 -34.01548 -33.13708 -32.10608 -31.28996 -28.04801 -27.08526 -26.49161 -26.09672 -24.07543 -22.82743 -22.27480 -20.89778 -19.53832 -18.55219 -17.46125 -16.56176 -16.27405 -15.52849 -14.97268 -14.69035 -14.52176 -14.31257 -13.80952 -13.70532 -13.37052 -13.24168 -12.99854 -12.73382 -12.61707 -12.33390 -12.04745 -12.03498 -11.71659 -11.49519 -11.39778 -11.12811 -10.98875 -10.94898 -10.85924 -10.64707 -10.60837 -10.36875 -10.24747 -9.89972 -9.84864 -9.17900 -8.91707 -8.83428 -8.37079 -8.34076 -5.98221 -3.99580 2.74105 3.32824 3.38284 3.39409 3.42802 4.11113 4.30640 4.44355 4.48237 4.61250 4.87224 5.04551 5.09127 5.22911 5.26520 5.35934 5.37144 5.49030 5.50622 5.53912 5.62355 5.67002 5.74878 5.77779 5.88114 5.90464 6.06367 6.15983 6.20162 6.25600 6.29801 6.43760 6.44992 6.63576 6.64760 6.85098 7.08706 7.09583 7.15486 7.21535 7.66268 7.79069 8.00450 8.19412 8.42399 8.84478 9.05031 9.63292 11.13260 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034845 B = 0.003280 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.369389 B = 8533.807332 C = 8994.357277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 C 0.157 3.843 4 H 0.072 0.928 5 C -0.127 4.127 6 C -0.132 4.132 7 C 0.098 3.902 8 N -0.639 5.639 9 C 0.718 3.282 10 O -0.590 6.590 11 N -0.735 5.735 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.037 3.963 17 C -0.512 4.512 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.027 0.973 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.738 6.764 15.460 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.090 0.910 5 C -0.165 4.165 6 C -0.170 4.170 7 C -0.025 4.025 8 N -0.378 5.378 9 C 0.420 3.580 10 O -0.468 6.468 11 N -0.391 5.391 12 C 0.023 3.977 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.001 4.001 17 C -0.550 4.550 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.023 6.336 14.453 23.212 hybrid contribution 1.358 0.155 0.483 1.450 sum -15.665 6.491 14.935 22.596 Atomic orbital electron populations 1.21705 0.95333 1.01805 1.01557 1.21921 0.95905 0.96545 1.03161 1.21391 0.79511 0.96331 0.97440 0.90965 1.22777 0.98150 0.99069 0.96497 1.22788 0.94332 0.98378 1.01476 1.22245 0.96987 0.95798 0.87495 1.47679 1.06673 1.64334 1.19123 1.15522 0.81850 0.78749 0.81863 1.90901 1.69329 1.54360 1.32186 1.45409 1.03956 1.67814 1.21903 1.21493 0.90770 0.98505 0.86907 1.20916 0.91625 0.95856 0.98903 1.21745 1.01748 0.95449 0.99313 1.21743 1.01847 0.99200 0.95471 1.19078 0.93932 0.96107 0.90942 1.21149 0.91000 1.40903 1.01942 0.92329 1.25011 0.98744 0.95525 0.95188 1.69951 1.34185 1.42087 1.07165 0.86713 0.85614 0.78287 0.77690 1.20342 1.21402 1.20341 0.92849 0.92646 0.92598 0.92133 0.90360 0.90087 0.90440 0.89908 0.90567 0.91689 0.90937 0.77192 0.92041 0.92050 0.95447 0.91476 0.93369 0.93374 0.91493 0.95402 0.96317 0.96316 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.69 37.16 0.36 -0.88 16 2 C -0.14 -1.50 5.41 -26.73 -0.14 -1.65 16 3 C 0.16 1.69 2.86 -66.95 -0.19 1.50 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.13 -0.90 5.74 -24.76 -0.14 -1.04 16 6 C -0.13 -0.88 7.09 -24.45 -0.17 -1.06 16 7 C 0.10 0.88 6.48 -2.53 -0.02 0.87 16 8 N -0.64 -8.07 3.07 -168.69 -0.52 -8.59 16 9 C 0.72 11.96 8.21 -86.92 -0.71 11.24 16 10 O -0.59 -12.12 15.52 5.29 0.08 -12.04 16 11 N -0.74 -11.59 4.92 -65.22 -0.32 -11.91 16 12 C 0.15 2.73 4.56 -4.04 -0.02 2.71 16 13 C -0.07 -1.41 0.54 -154.51 -0.08 -1.49 16 14 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 15 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 16 C 0.04 0.92 4.04 -27.88 -0.11 0.80 16 17 C -0.51 -13.66 7.65 -34.44 -0.26 -13.92 16 18 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 21 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H 0.05 0.36 7.65 -51.93 -0.40 -0.03 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.63 8.01 -51.93 -0.42 0.22 16 29 H 0.08 1.13 6.87 -51.93 -0.36 0.78 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.50 7.76 -51.93 -0.40 0.09 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 36 H 0.39 5.33 4.76 -40.82 -0.19 5.13 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -31.63 360.80 -9.09 -40.72 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.49 Total: 1.31 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.00 Total: -5.31 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.10 Total: -46.36 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.63 -9.09 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358710159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds