Wall clock time and date at job start Tue Mar 31 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46820 * 2 1 4 4 H 1.08998 * 109.87185 * 306.47840 * 3 2 1 5 5 C 1.54324 * 109.88559 * 67.49731 * 3 2 1 6 6 C 1.55405 * 102.82519 * 141.51931 * 5 3 2 7 7 C 1.54908 * 101.66909 * 324.65971 * 6 5 3 8 8 N 1.47023 * 109.87953 * 185.46600 * 3 2 1 9 9 C 1.34780 * 125.65019 * 61.60386 * 8 3 2 10 10 O 1.21582 * 119.99590 * 5.10354 * 9 8 3 11 11 N 1.34776 * 119.99867 * 185.09857 * 9 8 3 12 12 C 1.46502 * 119.99739 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46990 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47222 * 299.99916 * 13 12 11 15 15 C 1.53001 * 109.46962 * 60.00231 * 13 12 11 16 16 C 1.52999 * 109.46703 * 180.02562 * 13 12 11 17 17 C 1.50703 * 109.46754 * 179.97438 * 16 13 12 18 18 H 1.07999 * 120.00116 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99935 * 179.97438 * 17 16 13 20 20 N 1.31507 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99871 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47002 * 60.00104 * 21 19 17 23 23 H 1.48495 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47183 * 300.00452 * 21 19 17 25 25 H 1.08999 * 109.47138 * 294.98815 * 1 2 3 26 26 H 1.08996 * 109.46933 * 174.99130 * 1 2 3 27 27 H 1.09002 * 109.46933 * 54.98710 * 1 2 3 28 28 H 1.09000 * 109.47165 * 119.99441 * 2 1 3 29 29 H 1.08999 * 109.47228 * 239.99759 * 2 1 3 30 30 H 1.08998 * 110.71712 * 259.96897 * 5 3 2 31 31 H 1.08993 * 110.71940 * 23.24532 * 5 3 2 32 32 H 1.09005 * 111.03094 * 206.52785 * 6 5 3 33 33 H 1.08995 * 110.92552 * 82.75054 * 6 5 3 34 34 H 1.09003 * 110.36595 * 278.09099 * 7 6 5 35 35 H 1.08992 * 110.45968 * 155.81742 * 7 6 5 36 36 H 0.96996 * 120.00167 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.47132 * 300.00356 * 12 11 9 38 38 H 1.09007 * 109.47032 * 60.00240 * 12 11 9 39 39 H 1.08998 * 109.46858 * 59.99821 * 14 13 12 40 40 H 1.09001 * 109.47105 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47204 * 300.00082 * 14 13 12 42 42 H 1.08995 * 109.47418 * 59.99902 * 15 13 12 43 43 H 1.09001 * 109.46950 * 179.97438 * 15 13 12 44 44 H 1.09001 * 109.46855 * 299.99535 * 15 13 12 45 45 H 1.08995 * 109.47160 * 299.99780 * 16 13 12 46 46 H 1.08997 * 109.47425 * 60.00100 * 16 13 12 47 47 H 0.96996 * 120.00235 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5888 1.9950 -0.8242 5 6 1.6912 2.1226 1.3407 6 6 2.9519 2.9845 1.6285 7 6 4.0816 2.0833 1.0706 8 7 3.5042 1.4552 -0.1317 9 6 4.2030 0.9720 -1.1780 10 8 3.6183 0.5570 -2.1599 11 7 5.5499 0.9489 -1.1358 12 6 6.3095 0.4231 -2.2729 13 6 7.8067 0.5098 -1.9699 14 6 8.1945 1.9701 -1.7290 15 6 8.1227 -0.3147 -0.7204 16 6 8.5999 -0.0387 -3.1577 17 6 10.0746 0.0473 -2.8596 18 1 10.4123 0.4523 -1.9170 19 6 10.9928 -0.3920 -3.7897 20 7 10.5816 -0.8855 -4.9372 21 14 12.8208 -0.2847 -3.4205 22 1 13.1285 -1.0842 -2.2073 23 1 13.5907 -0.8183 -4.5727 24 1 13.1963 1.1329 -3.1873 25 1 -0.3633 0.4341 0.9315 26 1 -0.3633 -1.0237 -0.0897 27 1 -0.3633 0.5897 -0.8417 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 0.8071 2.7513 1.2357 31 1 1.5460 1.3788 2.1241 32 1 3.0767 3.1499 2.6987 33 1 2.9067 3.9319 1.0915 34 1 4.3559 1.3225 1.8015 35 1 4.9515 2.6836 0.8045 36 1 6.0164 1.2797 -0.3523 37 1 6.0334 -0.6174 -2.4443 38 1 6.0839 1.0103 -3.1632 39 1 7.6294 2.3613 -0.8830 40 1 9.2613 2.0320 -1.5136 41 1 7.9694 2.5575 -2.6191 42 1 7.8464 -1.3550 -0.8921 43 1 9.1895 -0.2533 -0.5049 44 1 7.5576 0.0765 0.1255 45 1 8.3236 -1.0789 -3.3298 46 1 8.3746 0.5490 -4.0476 47 1 11.2274 -1.1949 -5.5914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358710159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:46 Heat of formation + Delta-G solvation = -74.611319 kcal Electronic energy + Delta-G solvation = -23166.505723 eV Core-core repulsion = 19961.436219 eV Total energy + Delta-G solvation = -3205.069505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49307 -39.41953 -38.22203 -35.38146 -34.50559 -33.67883 -32.26328 -29.11336 -28.74051 -27.97764 -27.53423 -25.30487 -24.37541 -23.15707 -21.74944 -20.78903 -19.86755 -18.79993 -18.35116 -17.51362 -16.81522 -16.46611 -16.07499 -15.72900 -15.47445 -15.18052 -14.90543 -14.47045 -14.37706 -14.18949 -13.96307 -13.93633 -13.83789 -13.30588 -13.00143 -12.83491 -12.74908 -12.59067 -12.52261 -12.33877 -12.22800 -12.11854 -12.07127 -11.99341 -11.56921 -11.54387 -11.47521 -11.26165 -10.97828 -10.86767 -10.50354 -10.20306 -9.46299 -8.13280 -6.21556 1.42912 1.45395 1.52503 1.61311 2.13081 2.44835 3.05372 3.20993 3.66272 3.70341 3.93254 3.96769 4.07662 4.19520 4.21695 4.26862 4.38227 4.53014 4.59464 4.67650 4.69828 4.71520 4.75617 4.83050 4.94693 4.98986 5.04803 5.09222 5.10979 5.12905 5.16432 5.25182 5.28965 5.37937 5.41603 5.48270 5.49008 5.52723 5.54416 5.58642 5.79608 5.89765 6.08389 6.30752 6.92893 7.00847 7.46181 7.57029 8.99273 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.034845 B = 0.003280 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.369389 B = 8533.807332 C = 8994.357277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.147 3.853 4 H 0.053 0.947 5 C -0.116 4.116 6 C -0.122 4.122 7 C 0.087 3.913 8 N -0.636 5.636 9 C 0.711 3.289 10 O -0.639 6.639 11 N -0.723 5.723 12 C 0.162 3.838 13 C -0.064 4.064 14 C -0.119 4.119 15 C -0.119 4.119 16 C 0.041 3.959 17 C -0.515 4.515 18 H 0.074 0.926 19 C -0.005 4.005 20 N -0.940 5.940 21 Si 0.960 3.040 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.266 1.266 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.407 0.593 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.066 0.934 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.889 8.485 19.427 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.044 3.956 4 H 0.072 0.928 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.035 4.035 8 N -0.373 5.373 9 C 0.413 3.587 10 O -0.520 6.520 11 N -0.380 5.380 12 C 0.037 3.963 13 C -0.064 4.064 14 C -0.176 4.176 15 C -0.176 4.176 16 C 0.004 3.996 17 C -0.553 4.553 18 H 0.092 0.908 19 C -0.202 4.202 20 N -0.581 5.581 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.191 1.191 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.003 0.997 46 H 0.004 0.996 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.184 8.094 18.501 26.516 hybrid contribution 1.316 -0.387 -0.760 1.568 sum -15.868 7.707 17.741 25.019 Atomic orbital electron populations 1.21672 0.93326 1.02090 1.02729 1.21861 0.97684 0.96430 1.01206 1.21639 0.78326 0.96293 0.99358 0.92844 1.22778 0.99113 0.99379 0.94085 1.22806 0.92645 0.97510 1.03064 1.22610 0.98155 0.96618 0.86143 1.47762 1.07609 1.63015 1.18962 1.15723 0.81887 0.78757 0.82337 1.90868 1.70216 1.56433 1.34530 1.45053 1.03778 1.67742 1.21400 1.21059 0.90708 0.97107 0.87432 1.20717 0.91043 0.97291 0.97387 1.21668 1.01757 0.93764 1.00418 1.21665 1.01867 0.98399 0.95671 1.18953 0.94651 0.93831 0.92209 1.21561 0.91681 1.39780 1.02234 0.90780 1.25970 1.03920 0.95345 0.94997 1.70119 1.35786 1.43693 1.08465 0.85577 0.79478 0.78870 0.77583 1.19063 1.21751 1.19051 0.90169 0.92575 0.93146 0.91420 0.94872 0.88224 0.88948 0.86988 0.90623 0.90185 0.90303 0.75497 0.94127 0.94086 0.91464 0.92283 0.94533 0.94574 0.92288 0.91479 0.99671 0.99644 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.69 71.98 0.70 -1.52 16 2 C -0.13 -2.89 5.41 30.60 0.17 -2.72 16 3 C 0.15 3.00 2.86 45.34 0.13 3.13 16 4 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.12 -1.21 5.74 31.87 0.18 -1.03 16 6 C -0.12 -1.12 7.09 32.07 0.23 -0.89 16 7 C 0.09 1.26 6.48 86.85 0.56 1.83 16 8 N -0.64 -15.29 3.07 -805.88 -2.47 -17.76 16 9 C 0.71 23.87 8.21 179.05 1.47 25.34 16 10 O -0.64 -27.63 15.52 -3.97 -0.06 -27.69 16 11 N -0.72 -22.35 4.92 -478.52 -2.35 -24.70 16 12 C 0.16 6.22 4.56 86.38 0.39 6.62 16 13 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 14 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 15 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 16 C 0.04 2.14 4.04 29.85 0.12 2.26 16 17 C -0.51 -27.80 7.65 25.60 0.20 -27.60 16 18 H 0.07 3.71 5.68 -2.91 -0.02 3.69 16 19 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 20 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 21 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H 0.08 0.85 7.65 -2.39 -0.02 0.83 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.33 8.01 -2.39 -0.02 1.31 16 29 H 0.03 1.01 6.87 -2.39 -0.02 1.00 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 0.75 7.76 -2.39 -0.02 0.73 16 32 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.07 7.50 -2.39 -0.02 1.05 16 36 H 0.41 9.97 4.76 -92.71 -0.44 9.53 16 37 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 40 H 0.06 2.13 6.62 -2.39 -0.02 2.12 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 44 H 0.07 1.77 6.86 -2.39 -0.02 1.76 16 45 H -0.02 -0.88 8.14 -2.39 -0.02 -0.89 16 46 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 47 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -73.49 360.80 3.65 -69.84 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.48 Total: 16.06 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: 5.74 Total: -3.96 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -4.54 Total: -99.98 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.06 Total: -27.69 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.49 3.65 -69.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358710159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.772 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds