Wall clock time and date at job start Tue Mar 31 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47144 * 2 1 4 4 N 1.46501 * 109.46915 * 120.00142 * 2 1 3 5 5 C 1.34780 * 119.99971 * 120.27773 * 4 2 1 6 6 O 1.21591 * 119.99734 * 3.46454 * 5 4 2 7 7 N 1.34771 * 119.99917 * 183.46407 * 5 4 2 8 8 C 1.46498 * 119.99902 * 184.63404 * 7 5 4 9 9 C 1.53002 * 109.47015 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47206 * 299.99966 * 9 8 7 11 11 C 1.53002 * 109.47162 * 60.00016 * 9 8 7 12 12 C 1.52998 * 109.47129 * 180.02562 * 9 8 7 13 13 C 1.50699 * 109.47379 * 179.97438 * 12 9 8 14 14 H 1.08001 * 119.99692 * 359.97438 * 13 12 9 15 15 C 1.37877 * 120.00258 * 180.02562 * 13 12 9 16 16 N 1.31512 * 120.00162 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47276 * 59.99947 * 17 15 13 19 19 H 1.48502 * 109.47243 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47249 * 299.99834 * 17 15 13 21 21 C 1.46497 * 120.00013 * 299.99357 * 4 2 1 22 22 C 1.52996 * 117.49512 * 132.04368 * 21 4 2 23 23 C 1.52993 * 60.00138 * 252.51606 * 22 21 4 24 24 H 1.08996 * 109.47222 * 299.99889 * 1 2 3 25 25 H 1.09005 * 109.47182 * 60.00330 * 1 2 3 26 26 H 1.09010 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46720 * 239.99892 * 2 1 3 28 28 H 1.08998 * 109.47191 * 59.99466 * 3 2 1 29 29 H 1.08995 * 109.47025 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46811 * 299.99897 * 3 2 1 31 31 H 0.97000 * 120.00065 * 4.64046 * 7 5 4 32 32 H 1.09003 * 109.47212 * 299.99990 * 8 7 5 33 33 H 1.08994 * 109.47159 * 60.00242 * 8 7 5 34 34 H 1.08997 * 109.47276 * 59.99841 * 10 9 8 35 35 H 1.08995 * 109.47563 * 180.02562 * 10 9 8 36 36 H 1.09003 * 109.47163 * 300.00218 * 10 9 8 37 37 H 1.09002 * 109.46704 * 60.00108 * 11 9 8 38 38 H 1.09002 * 109.46655 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47347 * 300.00071 * 11 9 8 40 40 H 1.09009 * 109.47180 * 299.99898 * 12 9 8 41 41 H 1.09003 * 109.47052 * 59.99897 * 12 9 8 42 42 H 0.97002 * 120.00426 * 179.97438 * 16 15 13 43 43 H 1.08998 * 115.55608 * 277.75654 * 21 4 2 44 44 H 1.08997 * 117.50283 * 0.02562 * 22 21 4 45 45 H 1.08998 * 117.49967 * 145.02438 * 22 21 4 46 46 H 1.09004 * 117.50151 * 252.50837 * 23 22 21 47 47 H 1.09002 * 117.52028 * 107.48461 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7977 -1.7832 1.0725 6 8 3.1476 -2.1588 -0.0298 7 7 3.1894 -2.4593 2.1706 8 6 4.1182 -3.5853 2.0450 9 6 4.3971 -4.1732 3.4298 10 6 5.0168 -3.0983 4.3249 11 6 3.0862 -4.6602 4.0505 12 6 5.3676 -5.3487 3.2987 13 6 5.6428 -5.9274 4.6627 14 1 5.1728 -5.4993 5.5357 15 6 6.4953 -7.0028 4.7961 16 7 7.0680 -7.5238 3.7331 17 14 6.8370 -7.7196 6.4869 18 1 5.5653 -8.1931 7.0901 19 1 7.7789 -8.8607 6.3597 20 1 7.4380 -6.6755 7.3551 21 6 1.6645 -0.1901 2.5267 22 6 1.1474 -1.2046 3.5486 23 6 0.1844 -0.1992 2.9142 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0278 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1299 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 2.8563 -2.2005 3.0440 32 1 3.6765 -4.3513 1.4077 33 1 5.0519 -3.2385 1.6024 34 1 4.3258 -2.2605 4.4183 35 1 5.2159 -3.5171 5.3112 36 1 5.9507 -2.7513 3.8826 37 1 2.6447 -5.4261 3.4128 38 1 3.2850 -5.0794 5.0369 39 1 2.3951 -3.8225 4.1440 40 1 4.9264 -6.1148 2.6609 41 1 6.3014 -5.0014 2.8567 42 1 7.6681 -8.2801 3.8269 43 1 2.2769 0.6314 2.8983 44 1 1.0709 -2.2445 3.2311 45 1 1.4198 -1.0508 4.5927 46 1 -0.1769 0.6162 3.5410 47 1 -0.5261 -0.5772 2.1791 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358734753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:40 Heat of formation + Delta-G solvation = -11.316984 kcal Electronic energy + Delta-G solvation = -23616.217947 eV Core-core repulsion = 20413.893091 eV Total energy + Delta-G solvation = -3202.324856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.56921 -37.85222 -37.00660 -35.12599 -33.33573 -32.14519 -30.97080 -27.46203 -27.06710 -26.49631 -26.08261 -23.21323 -22.93420 -22.71299 -21.33442 -19.53099 -18.33451 -17.40900 -16.50020 -16.24967 -15.78766 -14.98165 -14.75133 -14.55311 -14.24681 -14.19908 -13.75246 -13.32151 -13.13370 -12.98458 -12.69631 -12.55854 -12.19207 -12.05441 -12.02629 -11.64061 -11.48168 -11.12447 -11.09751 -10.98028 -10.86045 -10.78088 -10.61520 -10.58665 -10.35322 -10.23475 -9.84349 -9.80292 -9.17112 -8.91027 -8.87179 -8.40302 -8.33690 -5.97812 -3.99172 2.70146 3.31836 3.33033 3.38505 3.39558 3.40783 4.04368 4.46599 4.50657 4.57650 4.77397 4.79748 5.01660 5.14329 5.31692 5.37499 5.38683 5.40212 5.52079 5.55539 5.61181 5.67847 5.71333 5.76346 5.79672 5.82723 6.00927 6.07969 6.21227 6.25979 6.32371 6.44956 6.57509 6.64635 6.65007 6.87675 7.07738 7.09855 7.10069 7.18587 7.66795 7.79688 8.00853 8.19962 8.42884 8.84481 9.05421 9.63683 11.13635 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.003675 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.082627 B = 7617.698874 C = 8058.618544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.152 3.848 3 C -0.159 4.159 4 N -0.605 5.605 5 C 0.704 3.296 6 O -0.593 6.593 7 N -0.738 5.738 8 C 0.142 3.858 9 C -0.072 4.072 10 C -0.126 4.126 11 C -0.127 4.127 12 C 0.037 3.963 13 C -0.511 4.511 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.067 3.933 22 C -0.198 4.198 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.260 0.740 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.197 17.710 -1.934 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.048 3.952 3 C -0.217 4.217 4 N -0.343 5.343 5 C 0.405 3.595 6 O -0.472 6.472 7 N -0.397 5.397 8 C 0.019 3.981 9 C -0.072 4.072 10 C -0.183 4.183 11 C -0.184 4.184 12 C -0.001 4.001 13 C -0.550 4.550 14 H 0.077 0.923 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.038 4.038 22 C -0.235 4.235 23 C -0.217 4.217 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.239 0.761 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.121 0.879 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.771 17.267 -2.804 22.264 hybrid contribution 0.135 -0.354 1.371 1.422 sum -13.636 16.913 -1.433 21.773 Atomic orbital electron populations 1.22435 0.95581 1.02262 1.02577 1.20863 0.93441 0.92720 0.88151 1.22117 1.01765 0.95824 1.01980 1.46702 1.53791 1.28962 1.04863 1.15982 0.78821 0.79661 0.85014 1.90892 1.61281 1.69794 1.25235 1.45832 1.50509 1.34788 1.08592 1.21502 0.91582 0.86567 0.98470 1.20901 0.97137 0.97506 0.91679 1.21751 0.99099 0.96402 1.01077 1.21774 0.95536 0.98986 1.02109 1.19081 0.92927 0.90660 0.97404 1.21148 1.26581 1.14194 0.93047 0.92326 1.25009 0.96140 0.96989 0.96327 1.69955 1.30645 1.24323 1.28464 0.86715 0.78078 0.78684 0.84835 1.20344 1.21413 1.20341 1.21573 0.97063 1.00512 0.84689 1.23532 1.04128 0.97172 0.98712 1.23524 0.92777 1.02023 1.03357 0.91264 0.91747 0.92452 0.88066 0.92438 0.92287 0.91678 0.76086 0.92037 0.92182 0.95422 0.91465 0.93369 0.93356 0.91438 0.95407 0.96314 0.96322 0.92991 0.86699 0.87402 0.87096 0.87891 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.04 37.16 0.30 -1.15 16 2 C 0.15 1.66 3.25 -67.93 -0.22 1.44 16 3 C -0.16 -1.40 9.19 37.16 0.34 -1.05 16 4 N -0.61 -7.61 2.70 -164.24 -0.44 -8.05 16 5 C 0.70 11.78 8.12 -86.92 -0.71 11.08 16 6 O -0.59 -12.24 15.68 5.29 0.08 -12.16 16 7 N -0.74 -11.80 4.38 -65.23 -0.29 -12.08 16 8 C 0.14 2.68 4.57 -4.04 -0.02 2.66 16 9 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 10 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 11 C -0.13 -2.26 8.05 37.16 0.30 -1.97 16 12 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 13 C -0.51 -13.64 7.65 -34.44 -0.26 -13.90 16 14 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.07 0.64 5.02 -67.93 -0.34 0.30 16 22 C -0.20 -1.80 8.03 -26.74 -0.21 -2.01 16 23 C -0.18 -1.35 8.66 -26.74 -0.23 -1.58 16 24 H 0.07 0.51 5.26 -51.93 -0.27 0.23 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.55 8.09 -51.92 -0.42 0.13 16 27 H 0.10 1.35 6.90 -51.93 -0.36 0.99 16 28 H 0.06 0.44 7.67 -51.93 -0.40 0.05 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.40 5.52 2.26 -40.82 -0.09 5.42 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 35 H 0.07 1.28 6.61 -51.93 -0.34 0.93 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 39 H 0.03 0.40 6.33 -51.93 -0.33 0.08 16 40 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.11 1.19 6.47 -51.93 -0.34 0.85 16 45 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.11 0.85 5.80 -51.93 -0.30 0.55 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -31.43 356.16 -8.67 -40.10 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.06 Total: 3.79 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.05 Total: -7.35 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.01 Total: -45.96 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.43 -8.67 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358734753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.781 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds