Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47205 * 2 1 4 4 H 1.09001 * 110.91817 * 302.54495 * 3 2 1 5 5 C 1.55157 * 111.00406 * 178.65141 * 3 2 1 6 6 C 1.54314 * 102.86673 * 206.22774 * 5 3 2 7 7 N 1.47027 * 107.27063 * 22.52150 * 6 5 3 8 8 C 1.34782 * 125.64482 * 180.96835 * 7 6 5 9 9 O 1.21587 * 120.00080 * 179.69296 * 8 7 6 10 10 N 1.34775 * 120.00074 * 359.69730 * 8 7 6 11 11 C 1.46499 * 120.00181 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47367 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47082 * 59.99995 * 12 11 10 14 14 C 1.53002 * 109.47595 * 300.00361 * 12 11 10 15 15 C 1.53004 * 109.47319 * 180.02562 * 12 11 10 16 16 C 1.50700 * 109.47208 * 180.02562 * 15 12 11 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 12 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 12 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.47418 * 108.70703 * 0.70640 * 7 6 5 25 25 H 1.09006 * 109.47261 * 300.00421 * 1 2 3 26 26 H 1.08997 * 109.46898 * 60.00135 * 1 2 3 27 27 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46986 * 239.99581 * 2 1 3 29 29 H 1.09007 * 109.46919 * 119.99865 * 2 1 3 30 30 H 1.09001 * 110.72309 * 324.78478 * 5 3 2 31 31 H 1.08997 * 110.72349 * 87.88154 * 5 3 2 32 32 H 1.09001 * 109.98591 * 263.04941 * 6 5 3 33 33 H 1.08994 * 109.77792 * 141.88023 * 6 5 3 34 34 H 0.97002 * 120.00040 * 359.97438 * 10 8 7 35 35 H 1.09009 * 109.46700 * 59.99666 * 11 10 8 36 36 H 1.08998 * 109.47265 * 299.99934 * 11 10 8 37 37 H 1.09005 * 109.47449 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.47212 * 300.00489 * 13 12 11 39 39 H 1.08998 * 109.46853 * 60.00166 * 13 12 11 40 40 H 1.09009 * 109.46796 * 300.00205 * 14 12 11 41 41 H 1.08998 * 109.47195 * 59.99206 * 14 12 11 42 42 H 1.08996 * 109.47765 * 179.97438 * 14 12 11 43 43 H 1.08994 * 109.47074 * 60.00408 * 15 12 11 44 44 H 1.08998 * 109.47285 * 300.00244 * 15 12 11 45 45 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 46 46 H 1.09004 * 110.36556 * 94.93062 * 24 7 6 47 47 H 1.09002 * 110.37137 * 217.25938 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6533 1.9919 -0.8583 5 6 3.5906 1.4840 0.0341 6 6 3.8834 2.8474 0.6949 7 7 2.6885 3.2254 1.4638 8 6 2.5376 4.3617 2.1727 9 8 1.4989 4.5733 2.7683 10 7 3.5380 5.2635 2.2214 11 6 3.3738 6.4989 2.9915 12 6 4.6465 7.3409 2.8824 13 6 4.9057 7.6857 1.4144 14 6 5.8317 6.5480 3.4369 15 6 4.4752 8.6308 3.6873 16 6 5.7287 9.4604 3.5793 17 1 6.5637 9.1036 2.9948 18 6 5.8094 10.6750 4.2268 19 7 4.7927 11.1093 4.9390 20 14 7.3628 11.7038 4.0924 21 1 7.1966 12.9556 4.8737 22 1 8.5140 10.9341 4.6287 23 1 7.6124 12.0395 2.6676 24 6 1.6804 2.1586 1.3257 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9853 0.6664 0.6373 31 1 3.9997 1.4487 -0.9756 32 1 4.0840 3.5971 -0.0706 33 1 4.7404 2.7574 1.3623 34 1 4.3667 5.0946 1.7464 35 1 3.1895 6.2532 4.0374 36 1 2.5292 7.0636 2.5967 37 1 5.8122 8.2859 1.3367 38 1 5.0278 6.7665 0.8414 39 1 4.0614 8.2506 1.0194 40 1 5.6471 6.3023 4.4828 41 1 5.9539 5.6288 2.8640 42 1 6.7386 7.1476 3.3588 43 1 4.2909 8.3848 4.7330 44 1 3.6308 9.1959 3.2926 45 1 3.9858 10.5753 5.0085 46 1 1.7469 1.4633 2.1625 47 1 0.6800 2.5873 1.2660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358744942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = -62.402975 kcal Electronic energy + Delta-G solvation = -22862.864513 eV Core-core repulsion = 19658.324401 eV Total energy + Delta-G solvation = -3204.540111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32429 -38.38317 -37.01161 -34.32263 -33.59993 -32.10036 -30.67407 -28.48757 -26.67001 -26.57047 -26.19957 -24.31645 -22.75987 -22.41782 -20.52043 -19.83265 -18.81956 -17.76784 -16.60926 -16.44961 -15.70680 -15.30596 -14.65797 -14.45303 -14.01833 -13.87039 -13.69266 -13.65122 -13.48963 -12.99638 -12.93302 -12.77206 -12.73391 -12.20022 -12.13050 -11.73904 -11.53267 -11.18891 -11.16291 -11.03939 -11.00685 -10.99282 -10.89472 -10.64287 -10.22261 -10.09670 -10.03670 -9.97638 -9.44047 -8.92128 -8.46161 -8.45011 -8.30210 -6.31483 -4.00480 2.68707 3.35627 3.44202 3.45839 3.64508 3.99986 4.26411 4.31625 4.41649 4.56474 4.81197 4.88004 5.01794 5.07100 5.16468 5.34547 5.42180 5.42615 5.44520 5.46333 5.58024 5.61739 5.64649 5.67093 5.68512 5.71391 5.88575 5.99456 6.09361 6.12085 6.17647 6.27422 6.34733 6.53818 6.57138 6.76069 6.98878 7.00357 7.03985 7.12916 7.37056 7.51807 8.10684 8.23717 8.48970 8.75690 8.91738 9.70479 11.08459 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.043956 B = 0.002956 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.848758 B = 9468.564287 C = 9849.442634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.125 4.125 6 C 0.099 3.901 7 N -0.642 5.642 8 C 0.718 3.282 9 O -0.592 6.592 10 N -0.734 5.734 11 C 0.146 3.854 12 C -0.065 4.065 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.023 3.977 16 C -0.591 4.591 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 1.066 2.934 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.131 3.869 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.394 0.606 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.028 0.972 42 H 0.068 0.932 43 H 0.009 0.991 44 H 0.009 0.991 45 H 0.269 0.731 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -22.264 -12.095 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.103 0.897 5 C -0.163 4.163 6 C -0.025 4.025 7 N -0.382 5.382 8 C 0.420 3.580 9 O -0.471 6.471 10 N -0.390 5.390 11 C 0.022 3.978 12 C -0.066 4.066 13 C -0.182 4.182 14 C -0.182 4.182 15 C -0.015 4.015 16 C -0.629 4.629 17 H 0.071 0.929 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.895 3.105 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.216 1.216 24 C 0.008 3.992 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.312 -20.560 -11.092 23.475 hybrid contribution -0.251 -1.511 -0.733 1.699 sum -2.563 -22.071 -11.825 25.170 Atomic orbital electron populations 1.21814 0.95538 1.01744 1.02277 1.21448 0.96199 0.94874 1.02347 1.22456 0.95271 0.96590 0.97989 0.89683 1.22668 0.95868 0.96379 1.01397 1.21972 0.88605 0.96818 0.95094 1.47568 1.17627 1.19746 1.53222 1.15527 0.84077 0.78938 0.79508 1.90913 1.28293 1.77925 1.49938 1.45347 1.17177 1.21030 1.55403 1.21495 0.98806 0.82573 0.94900 1.20762 0.92361 0.96669 0.96768 1.21739 1.02626 0.99166 0.94687 1.21740 0.99312 0.97578 0.99588 1.19215 0.97750 0.90478 0.94037 1.21964 1.00808 1.05776 1.34360 0.92902 1.25787 1.03041 0.96611 0.93648 1.70771 1.05289 1.40618 1.38380 0.83580 0.74577 0.76231 0.76130 1.20896 1.21557 1.21564 1.22084 0.92590 0.88182 0.96337 0.92322 0.92625 0.92660 0.91494 0.91599 0.90385 0.90008 0.91673 0.91668 0.77097 0.92102 0.92100 0.91311 0.95279 0.93467 0.93459 0.95285 0.91312 0.97245 0.97254 0.92047 0.91874 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.76 37.16 0.36 -0.58 16 2 C -0.11 -0.64 5.45 -26.74 -0.15 -0.79 16 3 C -0.10 -0.76 3.07 -88.48 -0.27 -1.03 16 4 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.13 -0.82 6.42 -24.90 -0.16 -0.98 16 6 C 0.10 0.89 6.14 -3.07 -0.02 0.87 16 7 N -0.64 -8.21 3.33 -176.25 -0.59 -8.79 16 8 C 0.72 12.15 8.49 -86.91 -0.74 11.41 16 9 O -0.59 -12.46 16.60 5.29 0.09 -12.37 16 10 N -0.73 -11.70 4.92 -65.23 -0.32 -12.02 16 11 C 0.15 2.72 4.56 -4.05 -0.02 2.71 16 12 C -0.07 -1.27 0.54 -154.51 -0.08 -1.36 16 13 C -0.12 -2.27 8.05 37.16 0.30 -1.97 16 14 C -0.12 -2.27 8.05 37.16 0.30 -1.97 16 15 C 0.02 0.56 3.35 -27.88 -0.09 0.47 16 16 C -0.59 -15.95 7.65 -34.44 -0.26 -16.22 16 17 H 0.05 1.38 5.68 -52.49 -0.30 1.08 16 18 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 19 N -0.91 -27.92 13.65 55.43 0.76 -27.16 16 20 Si 1.07 25.00 29.90 -169.99 -5.08 19.91 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.13 1.40 5.57 -2.53 -0.01 1.38 16 25 H 0.06 0.40 7.46 -51.93 -0.39 0.01 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 30 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 5.40 5.15 -40.82 -0.21 5.19 16 35 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 41 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 42 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 43 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 16 44 H 0.01 0.24 8.01 -51.93 -0.42 -0.17 16 45 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 46 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 47 H 0.08 0.92 7.96 -51.93 -0.41 0.51 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -32.60 362.43 -9.16 -41.76 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.53 Total: 0.99 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.94 Total: -7.77 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.15 Total: -47.97 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.60 -9.16 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358744942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.645 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds