Wall clock time and date at job start Tue Mar 31 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 H 1.09002 * 110.88605 * 54.30159 * 3 2 1 5 5 C 1.55158 * 111.00209 * 178.17968 * 3 2 1 6 6 C 1.54330 * 102.94056 * 153.61337 * 5 3 2 7 7 N 1.47022 * 107.27093 * 337.81035 * 6 5 3 8 8 C 1.34778 * 125.64623 * 178.97616 * 7 6 5 9 9 O 1.21590 * 120.00018 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99997 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99931 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47173 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.46926 * 300.00009 * 12 11 10 14 14 C 1.53003 * 109.46895 * 60.00174 * 12 11 10 15 15 C 1.53000 * 109.47137 * 179.97438 * 12 11 10 16 16 C 1.50692 * 109.47244 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99963 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00102 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00011 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47018 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47133 * 119.99712 * 20 18 16 23 23 H 1.48502 * 109.46721 * 239.99923 * 20 18 16 24 24 C 1.47523 * 108.71559 * 358.93837 * 7 6 5 25 25 H 1.08995 * 109.47121 * 59.99901 * 1 2 3 26 26 H 1.08993 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46884 * 299.99712 * 1 2 3 28 28 H 1.08999 * 109.46884 * 240.00288 * 2 1 3 29 29 H 1.08995 * 109.47121 * 120.00099 * 2 1 3 30 30 H 1.08996 * 110.72495 * 271.98095 * 5 3 2 31 31 H 1.09006 * 110.72015 * 35.08119 * 5 3 2 32 32 H 1.08998 * 109.87833 * 97.22798 * 6 5 3 33 33 H 1.08997 * 109.88366 * 218.39206 * 6 5 3 34 34 H 0.96998 * 120.00296 * 359.97438 * 10 8 7 35 35 H 1.09005 * 109.47103 * 299.99443 * 11 10 8 36 36 H 1.08999 * 109.47202 * 59.99260 * 11 10 8 37 37 H 1.08996 * 109.47297 * 60.00213 * 13 12 11 38 38 H 1.09001 * 109.46793 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.47137 * 299.99439 * 13 12 11 40 40 H 1.08997 * 109.47230 * 59.99588 * 14 12 11 41 41 H 1.08998 * 109.47024 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46554 * 299.99676 * 14 12 11 43 43 H 1.09005 * 109.46714 * 300.00096 * 15 12 11 44 44 H 1.08999 * 109.47190 * 59.99626 * 15 12 11 45 45 H 0.96999 * 120.00027 * 180.02562 * 19 18 16 46 46 H 1.09001 * 110.37251 * 265.30968 * 24 7 6 47 47 H 1.09004 * 110.41044 * 142.95250 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6093 2.0070 0.8270 5 6 3.5903 1.4843 0.0460 6 6 3.9199 2.8334 -0.6272 7 7 2.7646 3.1996 -1.4595 8 6 2.6519 4.3223 -2.1965 9 8 1.6462 4.5222 -2.8500 10 7 3.6539 5.2235 -2.2092 11 6 3.5312 6.4442 -3.0099 12 6 4.7964 7.2893 -2.8486 13 6 4.9767 7.6616 -1.3756 14 6 6.0094 6.4873 -3.3243 15 6 4.6684 8.5639 -3.6853 16 6 5.9148 9.3960 -3.5270 17 1 6.7177 9.0505 -2.8927 18 6 6.0296 10.5988 -4.1911 19 7 5.0517 11.0197 -4.9631 20 14 7.5744 11.6305 -3.9942 21 1 8.5172 10.9403 -3.0777 22 1 8.2181 11.8159 -5.3196 23 1 7.2156 12.9558 -3.4284 24 6 1.7494 2.1343 -1.3553 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.9462 1.4703 1.0762 31 1 4.0154 0.6545 -0.5187 32 1 4.0856 3.5964 0.1333 33 1 4.8079 2.7294 -1.2507 34 1 4.4561 5.0643 -1.6876 35 1 3.4023 6.1790 -4.0593 36 1 2.6672 7.0158 -2.6708 37 1 5.0681 6.7534 -0.7799 38 1 5.8778 8.2640 -1.2608 39 1 4.1125 8.2330 -1.0368 40 1 5.8809 6.2221 -4.3736 41 1 6.9108 7.0892 -3.2090 42 1 6.1007 5.5791 -2.7285 43 1 4.5401 8.2982 -4.7347 44 1 3.8041 9.1354 -3.3470 45 1 5.1326 11.8657 -5.4306 46 1 1.8591 1.4241 -2.1749 47 1 0.7472 2.5629 -1.3552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358744943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:38 Heat of formation + Delta-G solvation = -58.731197 kcal Electronic energy + Delta-G solvation = -22818.837004 eV Core-core repulsion = 19614.456113 eV Total energy + Delta-G solvation = -3204.380891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26312 -38.31076 -36.89975 -34.27694 -33.41633 -32.02220 -30.63136 -28.48430 -27.07651 -26.49077 -26.12007 -24.30575 -22.75178 -22.37507 -20.49844 -19.76903 -18.65624 -17.51474 -16.55629 -16.25099 -15.66244 -15.25775 -14.57267 -14.50538 -14.29502 -13.82455 -13.64747 -13.57114 -13.24453 -12.94219 -12.79835 -12.72033 -12.65577 -12.14551 -12.05333 -12.03679 -11.52211 -11.12939 -11.02231 -11.00940 -10.96352 -10.86152 -10.82468 -10.62729 -10.37565 -10.21986 -9.98785 -9.85528 -9.18485 -8.89867 -8.85801 -8.38777 -8.34754 -5.98595 -3.99744 2.74142 3.30856 3.38876 3.41219 3.41656 4.04623 4.29775 4.36171 4.44507 4.47088 4.84055 4.90869 5.04387 5.09667 5.19962 5.36967 5.38382 5.46401 5.49172 5.52996 5.64493 5.66715 5.67643 5.71133 5.74878 5.77703 5.90860 6.02505 6.15500 6.20189 6.27633 6.35530 6.44166 6.62993 6.64931 6.84445 7.08675 7.09536 7.14657 7.19808 7.66586 7.78897 8.00357 8.17424 8.42303 8.82080 9.05306 9.63252 11.12931 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044094 B = 0.002943 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.853565 B = 9512.288560 C = 9888.022622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.125 4.125 6 C 0.099 3.901 7 N -0.642 5.642 8 C 0.717 3.283 9 O -0.592 6.592 10 N -0.734 5.734 11 C 0.146 3.854 12 C -0.072 4.072 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.035 3.965 16 C -0.509 4.509 17 H 0.060 0.940 18 C 0.055 3.945 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.132 3.868 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -21.652 12.019 24.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.103 0.897 5 C -0.163 4.163 6 C -0.025 4.025 7 N -0.382 5.382 8 C 0.419 3.581 9 O -0.471 6.471 10 N -0.390 5.390 11 C 0.023 3.977 12 C -0.072 4.072 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.002 4.002 16 C -0.548 4.548 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C 0.008 3.992 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.905 -21.239 11.344 24.393 hybrid contribution 1.265 0.648 0.273 1.447 sum -2.640 -20.590 11.617 23.789 Atomic orbital electron populations 1.21811 0.95552 1.01718 1.02261 1.21452 0.96182 0.94920 1.02333 1.22458 0.95412 0.96660 0.97777 0.89688 1.22668 0.95779 0.96564 1.01307 1.21966 0.89452 0.96941 0.94099 1.47596 1.19830 1.20794 1.50002 1.15540 0.83837 0.78932 0.79783 1.90914 1.30808 1.77816 1.47524 1.45377 1.19315 1.22052 1.52211 1.21503 0.99022 0.82827 0.94363 1.20910 0.92216 0.97171 0.96945 1.21747 1.02620 0.99114 0.94815 1.21749 0.99146 0.97571 0.99831 1.19098 0.97477 0.89356 0.94276 1.21215 1.02242 1.03802 1.27511 0.92221 1.25021 0.96211 0.97862 0.95476 1.69978 1.31840 1.21325 1.30230 0.86593 0.83548 0.80386 0.77789 1.19823 1.21146 1.21151 1.22098 0.92539 0.88349 0.96186 0.92334 0.92687 0.92633 0.91595 0.91518 0.90051 0.90425 0.91690 0.91670 0.77149 0.92013 0.92026 0.95417 0.91461 0.93361 0.93352 0.91461 0.95426 0.96280 0.96281 0.93105 0.91903 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.79 37.16 0.36 -0.58 16 2 C -0.11 -0.65 5.44 -26.73 -0.15 -0.79 16 3 C -0.10 -0.76 3.04 -88.47 -0.27 -1.03 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.13 -0.82 6.42 -24.89 -0.16 -0.98 16 6 C 0.10 0.90 6.15 -3.06 -0.02 0.88 16 7 N -0.64 -8.23 3.33 -176.15 -0.59 -8.82 16 8 C 0.72 12.16 8.49 -86.92 -0.74 11.43 16 9 O -0.59 -12.50 16.60 5.29 0.09 -12.41 16 10 N -0.73 -11.69 4.92 -65.22 -0.32 -12.01 16 11 C 0.15 2.73 4.56 -4.04 -0.02 2.71 16 12 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 13 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 14 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 15 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 16 C -0.51 -13.59 7.65 -34.44 -0.26 -13.86 16 17 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.13 1.41 5.71 -2.48 -0.01 1.39 16 25 H 0.06 0.40 7.59 -51.93 -0.39 0.00 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 5.38 5.15 -40.82 -0.21 5.17 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 38 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 42 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 47 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -31.97 363.94 -9.17 -41.14 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.60 Total: 0.20 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.96 Total: -4.00 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: -0.17 Total: -46.68 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.97 -9.17 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358744943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.589 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds