Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47214 * 2 1 4 4 H 1.09000 * 109.45636 * 55.28053 * 3 2 1 5 5 C 1.53038 * 109.46427 * 295.30501 * 3 2 1 6 6 C 1.53115 * 109.28070 * 180.80368 * 5 3 2 7 7 C 1.53124 * 109.16132 * 57.65772 * 6 5 3 8 8 C 1.53037 * 109.27499 * 302.34757 * 7 6 5 9 9 N 1.46841 * 109.52711 * 59.17893 * 8 7 6 10 10 C 1.46903 * 111.00220 * 174.16340 * 9 8 7 11 11 C 1.52995 * 109.47449 * 65.89877 * 10 9 8 12 12 N 1.46500 * 109.47336 * 179.55290 * 11 10 9 13 13 C 1.34782 * 119.99748 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00161 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99454 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.46628 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.46961 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99853 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00328 * 180.02562 * 17 16 15 20 20 N 1.31526 * 119.99699 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00288 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46986 * 60.00079 * 21 19 17 23 23 H 1.48501 * 109.47115 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47404 * 299.99697 * 21 19 17 25 25 H 1.09008 * 109.47031 * 297.96603 * 1 2 3 26 26 H 1.08998 * 109.47396 * 57.96392 * 1 2 3 27 27 H 1.08998 * 109.47087 * 177.96654 * 1 2 3 28 28 H 1.08997 * 109.47341 * 240.00097 * 2 1 3 29 29 H 1.09003 * 109.47107 * 119.99914 * 2 1 3 30 30 H 1.09003 * 109.49984 * 60.86218 * 5 3 2 31 31 H 1.09000 * 109.50472 * 300.75212 * 5 3 2 32 32 H 1.08999 * 109.52660 * 297.75358 * 6 5 3 33 33 H 1.09003 * 109.52197 * 177.56074 * 6 5 3 34 34 H 1.08997 * 109.50280 * 182.40423 * 7 6 5 35 35 H 1.08995 * 109.53156 * 62.30485 * 7 6 5 36 36 H 1.09002 * 109.46324 * 299.15911 * 8 7 6 37 37 H 1.09004 * 109.45301 * 179.19194 * 8 7 6 38 38 H 1.09000 * 109.46554 * 305.90152 * 10 9 8 39 39 H 1.08998 * 109.47155 * 185.90301 * 10 9 8 40 40 H 1.09000 * 109.47320 * 59.54947 * 11 10 9 41 41 H 1.09000 * 109.47197 * 299.55475 * 11 10 9 42 42 H 0.96995 * 119.99691 * 359.97438 * 12 11 10 43 43 H 1.09000 * 109.47117 * 299.99951 * 15 13 12 44 44 H 1.08997 * 109.47034 * 60.00065 * 15 13 12 45 45 H 1.09000 * 109.47122 * 299.99691 * 16 15 13 46 46 H 1.08997 * 109.47569 * 60.00136 * 16 15 13 47 47 H 0.97000 * 119.99314 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6091 1.9799 0.8448 5 6 1.6285 2.1288 -1.3045 6 6 2.1581 3.5655 -1.3087 7 6 3.6798 3.5407 -1.1396 8 6 4.0318 2.8134 0.1601 9 7 3.5041 1.4438 0.1145 10 6 3.9411 0.6719 1.2855 11 6 3.3154 1.2646 2.5496 12 7 3.7427 0.4883 3.7162 13 6 3.3121 0.8293 4.9471 14 8 2.5713 1.7789 5.0889 15 6 3.7522 0.0310 6.1472 16 6 3.1253 0.6229 7.4111 17 6 3.5659 -0.1749 8.6113 18 1 4.2266 -1.0198 8.4851 19 6 3.1247 0.1732 9.8703 20 7 2.3197 1.2019 10.0239 21 14 3.6703 -0.8161 11.3579 22 1 5.1502 -0.7662 11.4699 23 1 3.0619 -0.2416 12.5847 24 1 3.2329 -2.2266 11.2019 25 1 -0.3633 0.4820 0.9077 26 1 -0.3634 0.5451 -0.8711 27 1 -0.3633 -1.0270 -0.0365 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5413 2.1415 -1.3817 31 1 2.0476 1.5839 -2.1503 32 1 1.7092 4.1217 -0.4858 33 1 1.9045 4.0443 -2.2545 34 1 4.0581 4.5621 -1.0990 35 1 4.1317 3.0184 -1.9828 36 1 3.5916 3.3443 1.0041 37 1 5.1152 2.7814 0.2762 38 1 5.0275 0.7144 1.3637 39 1 3.6250 -0.3654 1.1756 40 1 2.2290 1.2296 2.4680 41 1 3.6379 2.2995 2.6638 42 1 4.3350 -0.2714 3.6027 43 1 3.4305 -1.0041 6.0329 44 1 4.8386 0.0669 6.2289 45 1 3.4467 1.6582 7.5255 46 1 2.0390 0.5867 7.3291 47 1 2.0096 1.4470 10.9097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360190898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = -64.103043 kcal Electronic energy + Delta-G solvation = -22619.913288 eV Core-core repulsion = 19415.299457 eV Total energy + Delta-G solvation = -3204.613832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.13939 -38.91247 -35.32245 -34.24644 -33.44024 -33.19299 -30.99692 -29.47851 -28.37066 -25.75409 -24.63038 -24.24888 -22.33978 -21.52135 -20.99242 -19.70972 -19.33727 -16.92148 -16.27914 -16.01623 -15.71925 -15.43133 -15.36676 -14.82091 -14.48310 -14.40427 -13.98755 -13.59134 -13.52781 -13.17699 -13.02513 -12.87774 -12.31775 -12.16931 -12.14148 -11.95441 -11.77595 -11.48652 -11.30286 -11.15907 -10.98462 -10.92115 -10.86459 -10.61638 -10.55032 -10.27413 -9.94676 -9.66065 -9.20162 -9.05057 -8.77540 -8.48900 -8.31186 -5.95446 -4.00006 3.26674 3.34730 3.36815 3.39668 3.41874 3.79849 4.45770 4.48334 4.51597 4.61476 4.72739 4.86132 4.95871 4.98955 5.09441 5.12432 5.22707 5.28696 5.39265 5.40688 5.46163 5.48310 5.58207 5.60537 5.64563 5.68987 5.79430 5.81058 5.82501 5.89398 6.00410 6.01303 6.08116 6.17611 6.23661 6.25174 6.65126 6.86548 6.87727 6.90233 7.74573 7.86924 7.89011 8.07934 8.39318 8.79139 9.08535 9.63425 11.15516 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.002788 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.775080 B =10040.565334 C =10281.657655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.078 3.922 4 H 0.048 0.952 5 C -0.111 4.111 6 C -0.124 4.124 7 C -0.115 4.115 8 C 0.048 3.952 9 N -0.524 5.524 10 C 0.040 3.960 11 C 0.083 3.917 12 N -0.742 5.742 13 C 0.509 3.491 14 O -0.536 6.536 15 C -0.130 4.130 16 C 0.037 3.963 17 C -0.528 4.528 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.397 0.603 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.881 -0.372 -26.025 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.030 4.030 4 H 0.066 0.934 5 C -0.149 4.149 6 C -0.162 4.162 7 C -0.153 4.153 8 C -0.080 4.080 9 N -0.248 5.248 10 C -0.088 4.088 11 C -0.043 4.043 12 N -0.396 5.396 13 C 0.297 3.703 14 O -0.411 6.411 15 C -0.170 4.170 16 C 0.000 4.000 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.231 0.769 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.419 0.231 -26.211 26.250 hybrid contribution 0.240 -0.421 1.565 1.638 sum 1.658 -0.190 -24.646 24.702 Atomic orbital electron populations 1.21813 0.95485 1.01848 1.02007 1.21658 0.95835 0.95690 1.02706 1.21751 0.87143 0.96524 0.97620 0.93393 1.21664 1.00367 0.95448 0.97401 1.21609 0.95897 0.96935 1.01747 1.21572 0.96103 0.99809 0.97842 1.22167 1.00054 0.88392 0.97341 1.62240 1.10274 1.13823 1.38438 1.22472 1.00567 0.98778 0.86997 1.21968 1.00110 0.96360 0.85895 1.46104 1.52687 1.34338 1.06512 1.21595 0.79583 0.84919 0.84220 1.90664 1.35644 1.28988 1.85813 1.21863 1.01939 0.99365 0.93798 1.18889 0.96444 0.96347 0.88346 1.21192 1.29522 1.14121 0.91775 0.92644 1.25033 0.95119 0.95205 0.99053 1.69996 1.33303 1.26600 1.22984 0.86642 0.78839 0.80271 0.82118 1.20245 1.21280 1.20239 0.92636 0.92471 0.92524 0.91243 0.91452 0.91338 0.91186 0.92170 0.91848 0.91596 0.91179 0.94254 0.90587 0.90091 0.89536 0.91772 0.92094 0.76905 0.90244 0.90241 0.95882 0.95874 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.71 37.16 0.36 -0.92 16 2 C -0.12 -1.06 5.05 -26.74 -0.14 -1.20 16 3 C 0.08 0.73 1.31 -67.72 -0.09 0.64 16 4 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16 5 C -0.11 -0.89 5.10 -26.65 -0.14 -1.03 16 6 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 7 C -0.12 -0.90 6.09 -26.65 -0.16 -1.07 16 8 C 0.05 0.44 5.05 -3.84 -0.02 0.42 16 9 N -0.52 -4.93 4.69 -226.69 -1.06 -5.99 16 10 C 0.04 0.38 4.91 -3.82 -0.02 0.36 16 11 C 0.08 1.06 4.89 -4.04 -0.02 1.04 16 12 N -0.74 -10.48 5.56 -60.29 -0.33 -10.82 16 13 C 0.51 9.99 7.83 -10.98 -0.09 9.91 16 14 O -0.54 -13.02 15.98 5.56 0.09 -12.93 16 15 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 16 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 17 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 21 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.06 0.42 6.48 -51.93 -0.34 0.08 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.64 5.93 -51.93 -0.31 0.33 16 30 H 0.07 0.51 6.55 -51.93 -0.34 0.17 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.42 6.76 -51.93 -0.35 0.06 16 37 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 38 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.09 0.76 6.21 -51.93 -0.32 0.43 16 40 H 0.06 0.92 6.32 -51.93 -0.33 0.59 16 41 H 0.06 0.88 6.70 -51.93 -0.35 0.53 16 42 H 0.40 4.29 8.47 -40.82 -0.35 3.95 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -33.81 360.62 -9.78 -43.60 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -8.47 Total: -0.35 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -1.15 Total: -8.75 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.66 Total: -43.79 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.81 -9.78 -43.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360190898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.508 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds