Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47214 * 2 1 4 4 H 1.09000 * 109.45636 * 55.28053 * 3 2 1 5 5 C 1.53038 * 109.46427 * 295.30501 * 3 2 1 6 6 C 1.53115 * 109.28070 * 180.80368 * 5 3 2 7 7 C 1.53124 * 109.16132 * 57.65772 * 6 5 3 8 8 C 1.53037 * 109.27499 * 302.34757 * 7 6 5 9 9 N 1.46841 * 109.52711 * 59.17893 * 8 7 6 10 10 C 1.46903 * 111.00220 * 174.16340 * 9 8 7 11 11 C 1.52995 * 109.47449 * 65.89877 * 10 9 8 12 12 N 1.46500 * 109.47336 * 179.55290 * 11 10 9 13 13 C 1.34782 * 119.99748 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00161 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99454 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.46628 * 180.02562 * 15 13 12 17 17 C 1.50704 * 109.46961 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99853 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00328 * 180.02562 * 17 16 15 20 20 N 1.31526 * 119.99699 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00288 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46986 * 60.00079 * 21 19 17 23 23 H 1.48501 * 109.47115 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47404 * 299.99697 * 21 19 17 25 25 H 1.09008 * 109.47031 * 297.96603 * 1 2 3 26 26 H 1.08998 * 109.47396 * 57.96392 * 1 2 3 27 27 H 1.08998 * 109.47087 * 177.96654 * 1 2 3 28 28 H 1.08997 * 109.47341 * 240.00097 * 2 1 3 29 29 H 1.09003 * 109.47107 * 119.99914 * 2 1 3 30 30 H 1.09003 * 109.49984 * 60.86218 * 5 3 2 31 31 H 1.09000 * 109.50472 * 300.75212 * 5 3 2 32 32 H 1.08999 * 109.52660 * 297.75358 * 6 5 3 33 33 H 1.09003 * 109.52197 * 177.56074 * 6 5 3 34 34 H 1.08997 * 109.50280 * 182.40423 * 7 6 5 35 35 H 1.08995 * 109.53156 * 62.30485 * 7 6 5 36 36 H 1.09002 * 109.46324 * 299.15911 * 8 7 6 37 37 H 1.09004 * 109.45301 * 179.19194 * 8 7 6 38 38 H 1.09000 * 109.46554 * 305.90152 * 10 9 8 39 39 H 1.08998 * 109.47155 * 185.90301 * 10 9 8 40 40 H 1.09000 * 109.47320 * 59.54947 * 11 10 9 41 41 H 1.09000 * 109.47197 * 299.55475 * 11 10 9 42 42 H 0.96995 * 119.99691 * 359.97438 * 12 11 10 43 43 H 1.09000 * 109.47117 * 299.99951 * 15 13 12 44 44 H 1.08997 * 109.47034 * 60.00065 * 15 13 12 45 45 H 1.09000 * 109.47122 * 299.99691 * 16 15 13 46 46 H 1.08997 * 109.47569 * 60.00136 * 16 15 13 47 47 H 0.97000 * 119.99314 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6091 1.9799 0.8448 5 6 1.6285 2.1288 -1.3045 6 6 2.1581 3.5655 -1.3087 7 6 3.6798 3.5407 -1.1396 8 6 4.0318 2.8134 0.1601 9 7 3.5041 1.4438 0.1145 10 6 3.9411 0.6719 1.2855 11 6 3.3154 1.2646 2.5496 12 7 3.7427 0.4883 3.7162 13 6 3.3121 0.8293 4.9471 14 8 2.5713 1.7789 5.0889 15 6 3.7522 0.0310 6.1472 16 6 3.1253 0.6229 7.4111 17 6 3.5659 -0.1749 8.6113 18 1 4.2266 -1.0198 8.4851 19 6 3.1247 0.1732 9.8703 20 7 2.3197 1.2019 10.0239 21 14 3.6703 -0.8161 11.3579 22 1 5.1502 -0.7662 11.4699 23 1 3.0619 -0.2416 12.5847 24 1 3.2329 -2.2266 11.2019 25 1 -0.3633 0.4820 0.9077 26 1 -0.3634 0.5451 -0.8711 27 1 -0.3633 -1.0270 -0.0365 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5413 2.1415 -1.3817 31 1 2.0476 1.5839 -2.1503 32 1 1.7092 4.1217 -0.4858 33 1 1.9045 4.0443 -2.2545 34 1 4.0581 4.5621 -1.0990 35 1 4.1317 3.0184 -1.9828 36 1 3.5916 3.3443 1.0041 37 1 5.1152 2.7814 0.2762 38 1 5.0275 0.7144 1.3637 39 1 3.6250 -0.3654 1.1756 40 1 2.2290 1.2296 2.4680 41 1 3.6379 2.2995 2.6638 42 1 4.3350 -0.2714 3.6027 43 1 3.4305 -1.0041 6.0329 44 1 4.8386 0.0669 6.2289 45 1 3.4467 1.6582 7.5255 46 1 2.0390 0.5867 7.3291 47 1 2.0096 1.4470 10.9097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360190898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = -87.764188 kcal Electronic energy + Delta-G solvation = -22620.939313 eV Core-core repulsion = 19415.299457 eV Total energy + Delta-G solvation = -3205.639856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10352 -40.29815 -36.46384 -35.56288 -34.94775 -34.25627 -32.97481 -30.18321 -29.55000 -27.52977 -25.53417 -25.15894 -23.55839 -23.01890 -21.72258 -21.18177 -20.22297 -18.83157 -17.58091 -17.18306 -17.02084 -16.67173 -16.42625 -16.22370 -15.97139 -15.17326 -15.13529 -14.81217 -14.40570 -14.21741 -14.11118 -14.07445 -13.83589 -13.54835 -13.26204 -13.17804 -12.78380 -12.66560 -12.51696 -12.47016 -12.29381 -12.02833 -11.92718 -11.66471 -11.66172 -11.62846 -11.34160 -11.21822 -10.98999 -10.80201 -10.57439 -10.11910 -9.34675 -8.18972 -6.33536 1.41466 1.46289 1.54010 1.67414 2.17518 2.43524 2.90234 3.13834 3.74947 3.80458 3.86999 3.90800 4.01665 4.09107 4.19491 4.31324 4.34453 4.39363 4.42733 4.50700 4.51270 4.54765 4.68427 4.72813 4.78645 4.82237 4.89493 4.98322 5.04831 5.06771 5.08210 5.15153 5.19309 5.24472 5.33534 5.39046 5.39890 5.48582 5.50143 5.61016 5.83855 6.05214 6.10234 6.16045 6.58183 6.84928 7.31841 7.37050 8.93658 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030369 B = 0.002788 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.775080 B =10040.565334 C =10281.657655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.076 3.924 4 H 0.021 0.979 5 C -0.108 4.108 6 C -0.126 4.126 7 C -0.112 4.112 8 C 0.045 3.955 9 N -0.519 5.519 10 C 0.050 3.950 11 C 0.088 3.912 12 N -0.713 5.713 13 C 0.509 3.491 14 O -0.594 6.594 15 C -0.118 4.118 16 C 0.042 3.958 17 C -0.544 4.544 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.976 3.024 22 H -0.261 1.261 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.018 0.982 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.419 0.581 43 H 0.106 0.894 44 H 0.107 0.893 45 H -0.020 1.020 46 H -0.020 1.020 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -2.632 -27.466 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.032 4.032 4 H 0.039 0.961 5 C -0.145 4.145 6 C -0.163 4.163 7 C -0.149 4.149 8 C -0.083 4.083 9 N -0.242 5.242 10 C -0.079 4.079 11 C -0.038 4.038 12 N -0.368 5.368 13 C 0.297 3.703 14 O -0.474 6.474 15 C -0.158 4.158 16 C 0.004 3.996 17 C -0.582 4.582 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.214 1.214 24 H -0.186 1.186 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.257 0.743 43 H 0.125 0.875 44 H 0.125 0.875 45 H -0.001 1.001 46 H -0.001 1.001 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.319 -2.078 -27.713 27.988 hybrid contribution -0.362 0.329 1.948 2.008 sum 2.958 -1.749 -25.765 25.993 Atomic orbital electron populations 1.21805 0.95335 1.02286 1.01615 1.21628 0.95978 0.95092 1.02781 1.21772 0.87062 0.96899 0.97437 0.96081 1.21651 1.00785 0.95437 0.96670 1.21627 0.95933 0.96802 1.01954 1.21560 0.96046 1.00189 0.97145 1.22238 1.00411 0.88215 0.97425 1.62338 1.10203 1.13926 1.37690 1.22498 1.01245 0.99164 0.84962 1.22034 0.99389 0.95680 0.86698 1.45772 1.51447 1.34405 1.05142 1.21439 0.79101 0.84064 0.85686 1.90652 1.38462 1.31487 1.86775 1.21638 1.02942 1.00123 0.91079 1.18685 0.94191 0.94602 0.92103 1.21698 1.29585 1.14624 0.92293 0.90430 1.26176 0.94957 0.96323 1.03122 1.70187 1.34966 1.28847 1.23911 0.85348 0.78955 0.78763 0.77026 1.18605 1.21372 1.18590 0.94417 0.91375 0.91776 0.90112 0.92220 0.90829 0.90436 0.93564 0.90383 0.90796 0.90451 0.96387 0.89685 0.88364 0.88073 0.93537 0.93816 0.74321 0.87538 0.87531 1.00145 1.00133 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.71 71.98 0.70 -1.74 16 2 C -0.12 -1.91 5.05 30.59 0.15 -1.75 16 3 C 0.08 1.39 1.31 44.93 0.06 1.45 16 4 H 0.02 0.50 6.60 -2.39 -0.02 0.49 16 5 C -0.11 -1.60 5.10 30.65 0.16 -1.45 16 6 C -0.13 -1.85 6.00 30.67 0.18 -1.66 16 7 C -0.11 -1.59 6.09 30.65 0.19 -1.41 16 8 C 0.04 0.79 5.05 86.33 0.44 1.22 16 9 N -0.52 -9.03 4.69 -871.11 -4.09 -13.12 16 10 C 0.05 0.85 4.91 86.30 0.42 1.27 16 11 C 0.09 2.24 4.89 86.38 0.42 2.66 16 12 N -0.71 -19.36 5.56 -463.06 -2.57 -21.94 16 13 C 0.51 20.19 7.83 87.66 0.69 20.88 16 14 O -0.59 -30.40 15.98 -3.02 -0.05 -30.44 16 15 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 16 C 0.04 2.37 4.26 29.85 0.13 2.50 16 17 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 18 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 19 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 20 N -0.94 -60.38 13.29 21.45 0.28 -60.10 16 21 Si 0.98 44.54 29.54 68.60 2.03 46.56 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.92 6.48 -2.39 -0.02 0.91 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.06 5.93 -2.39 -0.01 1.04 16 30 H 0.07 1.01 6.55 -2.39 -0.02 1.00 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.02 0.39 6.76 -2.39 -0.02 0.38 16 37 H 0.08 1.33 8.06 -2.39 -0.02 1.31 16 38 H 0.10 1.40 8.06 -2.39 -0.02 1.38 16 39 H 0.10 1.49 6.21 -2.39 -0.01 1.47 16 40 H 0.05 1.39 6.32 -2.39 -0.02 1.37 16 41 H 0.04 1.29 6.70 -2.39 -0.02 1.28 16 42 H 0.42 7.83 8.47 -92.71 -0.79 7.05 16 43 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 44 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 45 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 46 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 47 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -77.31 360.62 0.15 -77.17 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.15 Total: 15.58 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 4.40 Total: -13.71 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -6.38 Total: -95.16 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.05 Total: -30.44 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -77.31 0.15 -77.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360190898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.599 kcal (2) G-P(sol) polarization free energy of solvation -77.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds