Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 H 1.09000 * 109.45076 * 301.74178 * 3 2 1 5 5 C 1.53031 * 109.46403 * 61.71928 * 3 2 1 6 6 C 1.53123 * 109.27864 * 179.19770 * 5 3 2 7 7 C 1.53117 * 109.15753 * 302.34167 * 6 5 3 8 8 C 1.53034 * 109.27805 * 57.65423 * 7 6 5 9 9 N 1.46842 * 109.52529 * 300.82240 * 8 7 6 10 10 C 1.46903 * 111.00018 * 185.84119 * 9 8 7 11 11 C 1.53002 * 109.47505 * 64.75562 * 10 9 8 12 12 N 1.46493 * 109.47187 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00164 * 179.72050 * 12 11 10 14 14 O 1.21280 * 119.99609 * 0.28010 * 13 12 11 15 15 C 1.50696 * 120.00222 * 180.27445 * 13 12 11 16 16 C 1.53005 * 109.47145 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47145 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00055 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99903 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99890 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99883 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46842 * 90.00218 * 21 19 17 23 23 H 1.48505 * 109.46908 * 210.00318 * 21 19 17 24 24 H 1.48501 * 109.47001 * 330.00142 * 21 19 17 25 25 H 1.09004 * 109.47368 * 183.12436 * 1 2 3 26 26 H 1.09006 * 109.47194 * 303.11706 * 1 2 3 27 27 H 1.08999 * 109.47309 * 63.12191 * 1 2 3 28 28 H 1.08994 * 109.47005 * 239.99620 * 2 1 3 29 29 H 1.09008 * 109.46911 * 119.99761 * 2 1 3 30 30 H 1.08997 * 109.50891 * 59.24983 * 5 3 2 31 31 H 1.09003 * 109.53542 * 299.15115 * 5 3 2 32 32 H 1.09001 * 109.52420 * 182.43818 * 6 5 3 33 33 H 1.09002 * 109.52146 * 62.24536 * 6 5 3 34 34 H 1.08993 * 109.50444 * 297.71683 * 7 6 5 35 35 H 1.08999 * 109.50386 * 177.59306 * 7 6 5 36 36 H 1.08999 * 109.46781 * 180.79897 * 8 7 6 37 37 H 1.09007 * 109.45646 * 60.82969 * 8 7 6 38 38 H 1.08996 * 109.47019 * 304.75101 * 10 9 8 39 39 H 1.09000 * 109.47275 * 184.75657 * 10 9 8 40 40 H 1.08994 * 109.46629 * 59.99765 * 11 10 9 41 41 H 1.09002 * 109.46414 * 299.99749 * 11 10 9 42 42 H 0.97005 * 120.00467 * 359.97438 * 12 11 10 43 43 H 1.09000 * 109.47187 * 300.00295 * 15 13 12 44 44 H 1.09002 * 109.47339 * 60.00515 * 15 13 12 45 45 H 1.09000 * 109.47190 * 300.00135 * 16 15 13 46 46 H 1.09002 * 109.46711 * 59.99972 * 16 15 13 47 47 H 0.96995 * 119.99791 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6512 1.9649 -0.8741 5 6 1.5654 2.1511 1.2706 6 6 2.0948 3.5879 1.2759 7 6 3.6228 3.5608 1.1819 8 6 4.0378 2.8113 -0.0862 9 7 3.5078 1.4425 -0.0428 10 6 4.0014 0.6506 -1.1774 11 6 5.5184 0.4869 -1.0636 12 7 6.0107 -0.3023 -2.1954 13 6 7.3266 -0.5707 -2.3081 14 8 8.1026 -0.1632 -1.4698 15 6 7.8338 -1.3772 -3.4757 16 6 9.3515 -1.5367 -3.3645 17 6 9.8587 -2.3427 -4.5324 18 1 9.1679 -2.7047 -5.2794 19 6 11.2049 -2.6181 -4.6471 20 7 11.6477 -3.3211 -5.6666 21 14 12.3999 -1.9914 -3.3553 22 1 12.5384 -3.0030 -2.2770 23 1 13.7247 -1.7510 -3.9817 24 1 11.8865 -0.7222 -2.7804 25 1 -0.3634 -1.0262 0.0560 26 1 -0.3634 0.5615 0.8608 27 1 -0.3634 0.4646 -0.9166 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9424 1.6212 2.1453 31 1 0.4758 2.1648 1.2950 32 1 1.7954 4.0831 2.1997 33 1 1.6868 4.1295 0.4224 34 1 4.0322 3.0530 2.0551 35 1 4.0031 4.5815 1.1421 36 1 5.1254 2.7778 -0.1489 37 1 3.6394 3.3274 -0.9598 38 1 3.7600 1.1616 -2.1094 39 1 3.5283 -0.3313 -1.1684 40 1 5.7597 -0.0240 -0.1315 41 1 5.9914 1.4689 -1.0727 42 1 5.3900 -0.6285 -2.8657 43 1 7.3640 -2.3608 -3.4693 44 1 7.5893 -0.8638 -4.4056 45 1 9.8216 -0.5533 -3.3706 46 1 9.5956 -2.0504 -2.4346 47 1 12.5946 -3.5151 -5.7472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360190899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -60.445815 kcal Electronic energy + Delta-G solvation = -22259.886526 eV Core-core repulsion = 19055.431284 eV Total energy + Delta-G solvation = -3204.455242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99430 -39.07947 -35.43968 -34.39635 -33.44959 -33.29827 -31.28212 -29.54909 -28.78126 -26.03930 -24.77743 -24.26924 -21.87708 -21.18185 -21.03324 -20.03235 -19.55518 -17.20288 -16.64250 -15.96037 -15.75138 -15.45112 -15.28867 -14.97906 -14.61398 -14.41023 -14.05565 -13.83812 -13.57781 -13.41698 -13.05490 -12.88807 -12.56633 -12.50515 -12.16491 -11.92921 -11.84760 -11.68999 -11.38984 -11.36046 -11.07410 -10.98714 -10.92115 -10.54460 -10.38146 -10.13741 -10.02067 -9.76253 -9.22515 -9.14483 -8.82501 -8.62697 -8.48746 -6.01316 -3.99874 3.16661 3.17724 3.39843 3.46191 3.57639 3.84362 4.36357 4.39812 4.52379 4.52915 4.64964 4.80255 4.85879 4.91378 4.98064 5.01012 5.10668 5.22920 5.29749 5.33391 5.34283 5.36157 5.45747 5.53261 5.57296 5.60974 5.68615 5.71625 5.82796 5.84315 5.90558 5.91434 5.95935 6.08344 6.11432 6.12873 6.60522 6.72275 6.80369 6.82435 7.39316 7.46228 7.78206 7.82961 8.52226 8.69434 9.01893 9.61909 11.11532 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.002684 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.748586 B =10428.116037 C =11059.544632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.088 3.912 4 H 0.039 0.961 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.050 3.950 9 N -0.530 5.530 10 C 0.040 3.960 11 C 0.122 3.878 12 N -0.743 5.743 13 C 0.510 3.490 14 O -0.540 6.540 15 C -0.122 4.122 16 C 0.001 3.999 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.397 0.603 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.023 0.977 46 H 0.019 0.981 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.454 12.113 12.672 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.021 4.021 4 H 0.057 0.943 5 C -0.150 4.150 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.078 4.078 9 N -0.255 5.255 10 C -0.088 4.088 11 C -0.002 4.002 12 N -0.397 5.397 13 C 0.299 3.701 14 O -0.416 6.416 15 C -0.162 4.162 16 C -0.037 4.037 17 C -0.562 4.562 18 H 0.091 0.909 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.539 12.132 13.644 30.586 hybrid contribution 0.076 0.490 -0.541 0.734 sum -24.463 12.623 13.103 30.487 Atomic orbital electron populations 1.21819 0.95500 1.01885 1.01847 1.21706 0.95717 0.95794 1.02955 1.21633 0.86763 0.96209 0.97450 0.94270 1.21684 1.00016 0.95443 0.97884 1.21599 0.95944 0.96794 1.01667 1.21586 0.95736 0.99792 0.98389 1.22202 1.00592 0.87888 0.97107 1.61798 1.08195 1.12909 1.42601 1.22349 0.95246 0.99213 0.92009 1.21193 0.92342 0.96274 0.90416 1.46092 1.08964 1.56967 1.27680 1.21516 0.80939 0.79703 0.87980 1.90655 1.55607 1.52291 1.43032 1.21663 1.00942 0.98998 0.94572 1.19369 0.89157 0.97644 0.97496 1.21121 0.93617 1.33331 1.08170 0.90949 1.24980 0.98370 0.94501 0.95443 1.69912 1.14831 1.39505 1.30063 0.86790 0.80200 0.80571 0.81968 1.20224 1.21468 1.18514 0.92487 0.92315 0.92920 0.91543 0.90902 0.90968 0.91322 0.91806 0.92426 0.90915 0.91533 0.90012 0.94930 0.94365 0.89419 0.90951 0.91931 0.76922 0.89623 0.89655 0.95852 0.96254 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.68 37.16 0.36 -0.52 16 2 C -0.12 -0.87 5.10 -26.73 -0.14 -1.01 16 3 C 0.09 0.67 1.95 -67.73 -0.13 0.54 16 4 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 5 C -0.11 -0.77 5.04 -26.65 -0.13 -0.90 16 6 C -0.12 -0.82 6.00 -26.61 -0.16 -0.98 16 7 C -0.12 -0.89 6.09 -26.65 -0.16 -1.06 16 8 C 0.05 0.44 5.28 -3.84 -0.02 0.42 16 9 N -0.53 -4.82 4.50 -226.70 -1.02 -5.84 16 10 C 0.04 0.37 4.78 -3.82 -0.02 0.35 16 11 C 0.12 1.50 5.58 -4.04 -0.02 1.48 16 12 N -0.74 -10.00 5.56 -60.30 -0.33 -10.34 16 13 C 0.51 9.46 7.83 -10.99 -0.09 9.37 16 14 O -0.54 -12.28 15.98 5.56 0.09 -12.19 16 15 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 16 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 17 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 21 Si 0.88 22.84 27.47 -169.99 -4.67 18.17 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 6.33 -51.93 -0.33 -0.02 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.47 6.03 -51.93 -0.31 0.16 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.39 6.45 -51.93 -0.33 0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.80 6.17 -51.93 -0.32 0.48 16 37 H 0.03 0.29 8.14 -51.92 -0.42 -0.14 16 38 H 0.04 0.34 8.13 -51.93 -0.42 -0.08 16 39 H 0.09 0.74 5.67 -51.93 -0.29 0.45 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.84 6.40 -51.93 -0.33 0.50 16 42 H 0.40 4.11 8.47 -40.82 -0.35 3.76 16 43 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 45 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 46 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 47 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -33.74 360.14 -9.46 -43.20 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.54 Total: -2.51 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.19 Total: -8.45 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.58 Total: -43.65 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.67 Total: 18.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.74 -9.46 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360190899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.244 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds