Wall clock time and date at job start Tue Mar 31 2020 05:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 H 1.09000 * 109.45076 * 301.74178 * 3 2 1 5 5 C 1.53031 * 109.46403 * 61.71928 * 3 2 1 6 6 C 1.53123 * 109.27864 * 179.19770 * 5 3 2 7 7 C 1.53117 * 109.15753 * 302.34167 * 6 5 3 8 8 C 1.53034 * 109.27805 * 57.65423 * 7 6 5 9 9 N 1.46842 * 109.52529 * 300.82240 * 8 7 6 10 10 C 1.46903 * 111.00018 * 185.84119 * 9 8 7 11 11 C 1.53002 * 109.47505 * 64.75562 * 10 9 8 12 12 N 1.46493 * 109.47187 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00164 * 179.72050 * 12 11 10 14 14 O 1.21280 * 119.99609 * 0.28010 * 13 12 11 15 15 C 1.50696 * 120.00222 * 180.27445 * 13 12 11 16 16 C 1.53005 * 109.47145 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47145 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00055 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99903 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99890 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99883 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46842 * 90.00218 * 21 19 17 23 23 H 1.48505 * 109.46908 * 210.00318 * 21 19 17 24 24 H 1.48501 * 109.47001 * 330.00142 * 21 19 17 25 25 H 1.09004 * 109.47368 * 183.12436 * 1 2 3 26 26 H 1.09006 * 109.47194 * 303.11706 * 1 2 3 27 27 H 1.08999 * 109.47309 * 63.12191 * 1 2 3 28 28 H 1.08994 * 109.47005 * 239.99620 * 2 1 3 29 29 H 1.09008 * 109.46911 * 119.99761 * 2 1 3 30 30 H 1.08997 * 109.50891 * 59.24983 * 5 3 2 31 31 H 1.09003 * 109.53542 * 299.15115 * 5 3 2 32 32 H 1.09001 * 109.52420 * 182.43818 * 6 5 3 33 33 H 1.09002 * 109.52146 * 62.24536 * 6 5 3 34 34 H 1.08993 * 109.50444 * 297.71683 * 7 6 5 35 35 H 1.08999 * 109.50386 * 177.59306 * 7 6 5 36 36 H 1.08999 * 109.46781 * 180.79897 * 8 7 6 37 37 H 1.09007 * 109.45646 * 60.82969 * 8 7 6 38 38 H 1.08996 * 109.47019 * 304.75101 * 10 9 8 39 39 H 1.09000 * 109.47275 * 184.75657 * 10 9 8 40 40 H 1.08994 * 109.46629 * 59.99765 * 11 10 9 41 41 H 1.09002 * 109.46414 * 299.99749 * 11 10 9 42 42 H 0.97005 * 120.00467 * 359.97438 * 12 11 10 43 43 H 1.09000 * 109.47187 * 300.00295 * 15 13 12 44 44 H 1.09002 * 109.47339 * 60.00515 * 15 13 12 45 45 H 1.09000 * 109.47190 * 300.00135 * 16 15 13 46 46 H 1.09002 * 109.46711 * 59.99972 * 16 15 13 47 47 H 0.96995 * 119.99791 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6512 1.9649 -0.8741 5 6 1.5654 2.1511 1.2706 6 6 2.0948 3.5879 1.2759 7 6 3.6228 3.5608 1.1819 8 6 4.0378 2.8113 -0.0862 9 7 3.5078 1.4425 -0.0428 10 6 4.0014 0.6506 -1.1774 11 6 5.5184 0.4869 -1.0636 12 7 6.0107 -0.3023 -2.1954 13 6 7.3266 -0.5707 -2.3081 14 8 8.1026 -0.1632 -1.4698 15 6 7.8338 -1.3772 -3.4757 16 6 9.3515 -1.5367 -3.3645 17 6 9.8587 -2.3427 -4.5324 18 1 9.1679 -2.7047 -5.2794 19 6 11.2049 -2.6181 -4.6471 20 7 11.6477 -3.3211 -5.6666 21 14 12.3999 -1.9914 -3.3553 22 1 12.5384 -3.0030 -2.2770 23 1 13.7247 -1.7510 -3.9817 24 1 11.8865 -0.7222 -2.7804 25 1 -0.3634 -1.0262 0.0560 26 1 -0.3634 0.5615 0.8608 27 1 -0.3634 0.4646 -0.9166 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9424 1.6212 2.1453 31 1 0.4758 2.1648 1.2950 32 1 1.7954 4.0831 2.1997 33 1 1.6868 4.1295 0.4224 34 1 4.0322 3.0530 2.0551 35 1 4.0031 4.5815 1.1421 36 1 5.1254 2.7778 -0.1489 37 1 3.6394 3.3274 -0.9598 38 1 3.7600 1.1616 -2.1094 39 1 3.5283 -0.3313 -1.1684 40 1 5.7597 -0.0240 -0.1315 41 1 5.9914 1.4689 -1.0727 42 1 5.3900 -0.6285 -2.8657 43 1 7.3640 -2.3608 -3.4693 44 1 7.5893 -0.8638 -4.4056 45 1 9.8216 -0.5533 -3.3706 46 1 9.5956 -2.0504 -2.4346 47 1 12.5946 -3.5151 -5.7472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360190899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:07 Heat of formation + Delta-G solvation = -83.500416 kcal Electronic energy + Delta-G solvation = -22260.886249 eV Core-core repulsion = 19055.431284 eV Total energy + Delta-G solvation = -3205.454965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.90139 -40.29136 -36.51959 -35.52326 -34.95088 -34.25027 -33.27150 -30.10465 -29.91760 -27.74330 -25.41549 -25.09853 -23.24510 -22.38304 -21.74510 -21.15453 -20.55070 -19.20161 -17.67986 -17.37518 -16.88320 -16.49457 -16.18098 -16.15260 -15.75163 -15.55157 -15.07098 -14.82901 -14.72665 -14.53047 -14.27758 -13.97060 -13.80795 -13.59210 -13.40133 -12.93373 -12.77934 -12.73487 -12.44429 -12.40505 -12.09806 -11.96953 -11.95461 -11.76641 -11.65333 -11.56454 -11.39901 -11.17033 -10.97621 -10.78088 -10.77025 -10.07206 -9.31732 -8.31585 -6.34276 1.33273 1.35046 1.50400 1.68860 2.11586 2.35107 2.98828 3.04114 3.74519 3.77979 3.87558 3.95513 4.03798 4.12611 4.19108 4.33112 4.36358 4.40574 4.44901 4.48418 4.50493 4.56632 4.68609 4.72890 4.79684 4.88404 4.93195 4.97615 5.02374 5.03699 5.09253 5.17421 5.20634 5.27727 5.33047 5.35921 5.43701 5.45067 5.47673 5.50752 5.61447 6.07567 6.16664 6.23632 6.58827 6.72178 7.30891 7.31552 8.84051 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031929 B = 0.002684 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.748586 B =10428.116037 C =11059.544632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.088 3.912 4 H 0.040 0.960 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.116 4.116 8 C 0.049 3.951 9 N -0.541 5.541 10 C 0.050 3.950 11 C 0.126 3.874 12 N -0.718 5.718 13 C 0.514 3.486 14 O -0.588 6.588 15 C -0.116 4.116 16 C 0.004 3.996 17 C -0.528 4.528 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.943 5.943 21 Si 0.938 3.062 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.035 0.965 38 H 0.048 0.952 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.416 0.584 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.342 12.879 13.373 33.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.020 4.020 4 H 0.058 0.942 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.079 4.079 9 N -0.266 5.266 10 C -0.078 4.078 11 C 0.002 3.998 12 N -0.372 5.372 13 C 0.302 3.698 14 O -0.468 6.468 15 C -0.155 4.155 16 C -0.034 4.034 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.584 5.584 21 Si 0.763 3.237 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.187 1.187 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.253 0.747 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.494 12.896 14.329 32.765 hybrid contribution 0.583 0.243 -0.792 1.013 sum -25.911 13.139 13.537 32.050 Atomic orbital electron populations 1.21795 0.94424 1.02254 1.02265 1.21687 0.96637 0.95185 1.02473 1.21688 0.85623 0.96775 0.97871 0.94221 1.21684 1.00847 0.95272 0.97029 1.21592 0.94975 0.96859 1.02335 1.21577 0.96651 0.99882 0.97280 1.22196 0.99755 0.88074 0.97863 1.61798 1.09310 1.12976 1.42523 1.22233 0.92763 1.00149 0.92631 1.21208 0.94485 0.95099 0.89017 1.45796 1.07571 1.55644 1.28152 1.21217 0.82172 0.79350 0.87029 1.90643 1.57199 1.54378 1.44546 1.21494 0.97268 1.00727 0.96050 1.19229 0.93102 0.95809 0.95255 1.21435 0.93458 1.33099 1.08648 0.93036 1.25806 1.00374 0.94882 0.97401 1.70020 1.15535 1.40982 1.31860 0.85833 0.78348 0.79945 0.79612 1.19363 1.20316 1.18674 0.92202 0.91776 0.92585 0.91564 0.91801 0.91837 0.89898 0.90846 0.92046 0.91916 0.90777 0.91456 0.94690 0.93379 0.88244 0.92569 0.92936 0.74655 0.87756 0.87827 0.97276 0.97369 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.68 71.98 0.70 -0.70 16 2 C -0.12 -1.48 5.10 30.59 0.16 -1.32 16 3 C 0.09 1.19 1.95 44.94 0.09 1.27 16 4 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 5 C -0.11 -1.30 5.04 30.65 0.15 -1.15 16 6 C -0.12 -1.38 6.00 30.67 0.18 -1.20 16 7 C -0.12 -1.65 6.09 30.64 0.19 -1.46 16 8 C 0.05 0.82 5.28 86.33 0.46 1.28 16 9 N -0.54 -9.11 4.50 -871.13 -3.92 -13.03 16 10 C 0.05 0.84 4.78 86.30 0.41 1.25 16 11 C 0.13 2.97 5.58 86.38 0.48 3.45 16 12 N -0.72 -18.01 5.56 -463.08 -2.57 -20.59 16 13 C 0.51 18.47 7.83 87.66 0.69 19.16 16 14 O -0.59 -26.66 15.98 -3.03 -0.05 -26.71 16 15 C -0.12 -4.37 5.64 29.85 0.17 -4.20 16 16 C 0.00 0.20 3.33 29.85 0.10 0.30 16 17 C -0.53 -30.70 9.66 25.60 0.25 -30.45 16 18 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 19 C 0.01 0.78 5.47 84.66 0.46 1.24 16 20 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 21 Si 0.94 47.29 27.47 68.60 1.88 49.17 16 22 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.26 -13.20 6.54 99.48 0.65 -12.55 16 25 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.06 0.53 6.33 -2.38 -0.02 0.51 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.79 6.03 -2.39 -0.01 0.78 16 29 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.75 6.45 -2.39 -0.02 0.73 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.31 6.17 -2.39 -0.01 1.30 16 37 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 39 H 0.10 1.44 5.67 -2.39 -0.01 1.43 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.38 6.40 -2.39 -0.02 1.37 16 42 H 0.42 7.40 8.47 -92.70 -0.79 6.62 16 43 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 46 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 47 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -72.67 360.14 0.21 -72.46 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.09 Total: 10.32 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.48 Total: -12.52 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -6.19 Total: -92.72 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.88 Total: 49.17 kcal Total: -72.67 0.21 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360190899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.044 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds