Wall clock time and date at job start Tue Mar 31 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47351 * 2 1 4 4 N 1.46903 * 109.47220 * 179.97438 * 3 2 1 5 5 C 1.46905 * 111.00211 * 293.95533 * 4 3 2 6 6 C 1.46895 * 111.00235 * 169.99704 * 4 3 2 7 7 C 1.52998 * 109.47080 * 189.99880 * 6 4 3 8 8 H 1.08997 * 110.89377 * 308.88211 * 7 6 4 9 9 C 1.55155 * 111.03647 * 72.79047 * 7 6 4 10 10 C 1.54327 * 102.94571 * 153.58896 * 9 7 6 11 11 N 1.47024 * 107.26774 * 337.80617 * 10 9 7 12 12 C 1.34780 * 125.64847 * 179.20685 * 11 10 9 13 13 O 1.21278 * 120.00386 * 179.69053 * 12 11 10 14 14 C 1.50707 * 119.99690 * 359.68630 * 12 11 10 15 15 C 1.53003 * 109.46952 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46920 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00332 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00005 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00197 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46788 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47242 * 120.00138 * 20 18 16 23 23 H 1.48499 * 109.46903 * 240.00242 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 11 10 9 25 25 H 1.09007 * 109.46553 * 59.99879 * 1 2 3 26 26 H 1.08994 * 109.47495 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47143 * 300.00892 * 1 2 3 28 28 H 1.09003 * 109.46874 * 239.99571 * 2 1 3 29 29 H 1.09007 * 109.46553 * 120.00121 * 2 1 3 30 30 H 1.09003 * 109.47482 * 59.99943 * 3 2 1 31 31 H 1.08997 * 109.47373 * 299.99543 * 3 2 1 32 32 H 1.08996 * 109.46888 * 296.04562 * 5 4 3 33 33 H 1.09009 * 109.46700 * 56.03952 * 5 4 3 34 34 H 1.08993 * 109.47429 * 176.03964 * 5 4 3 35 35 H 1.09002 * 109.46922 * 70.00737 * 6 4 3 36 36 H 1.08993 * 109.47553 * 310.00215 * 6 4 3 37 37 H 1.08999 * 110.71965 * 271.94862 * 9 7 6 38 38 H 1.08996 * 110.72196 * 35.22130 * 9 7 6 39 39 H 1.08995 * 109.88184 * 218.39040 * 10 9 7 40 40 H 1.09002 * 109.88385 * 97.22047 * 10 9 7 41 41 H 1.08997 * 109.47117 * 300.00376 * 14 12 11 42 42 H 1.09002 * 109.46743 * 60.00082 * 14 12 11 43 43 H 1.09000 * 109.47351 * 300.00645 * 15 14 12 44 44 H 1.09000 * 109.46511 * 60.00276 * 15 14 12 45 45 H 0.97004 * 120.00447 * 179.97438 * 19 18 16 46 46 H 1.09002 * 110.36518 * 142.96440 * 24 11 10 47 47 H 1.08997 * 110.36787 * 265.28818 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0351 0.8857 1.2543 6 6 4.0357 2.7928 -0.2376 7 6 5.5448 2.7167 -0.4778 8 1 6.0362 2.1500 0.3130 9 6 5.8570 2.1116 -1.8720 10 6 7.2340 2.7197 -2.2123 11 7 7.3822 3.9417 -1.4084 12 6 8.4566 4.7554 -1.4068 13 8 8.4676 5.7440 -0.7045 14 6 9.6445 4.4366 -2.2777 15 6 10.7177 5.5108 -2.0897 16 6 11.9058 5.1916 -2.9601 17 1 11.8962 4.3110 -3.5852 18 6 13.0050 6.0240 -2.9584 19 7 13.0168 7.0960 -2.1968 20 14 14.4774 5.6288 -4.0378 21 1 14.2161 4.3768 -4.7925 22 1 14.7055 6.7439 -4.9915 23 1 15.6814 5.4511 -3.1869 24 6 6.1582 4.1331 -0.6091 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5140 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8901 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9562 -0.8900 32 1 3.7437 1.5262 2.0866 33 1 3.6292 -0.1146 1.4061 34 1 5.1223 0.8322 1.2001 35 1 3.8375 3.4187 0.6325 36 1 3.5497 3.2232 -1.1131 37 1 5.9187 1.0248 -1.8157 38 1 5.1085 2.4191 -2.6022 39 1 7.2784 2.9661 -3.2731 40 1 8.0241 2.0122 -1.9605 41 1 10.0499 3.4644 -1.9975 42 1 9.3334 4.4132 -3.3221 43 1 10.3119 6.4828 -2.3700 44 1 11.0288 5.5345 -1.0453 45 1 13.7903 7.6814 -2.1952 46 1 6.4061 4.5318 0.3746 47 1 5.4677 4.7992 -1.1264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360317438.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:57 Heat of formation + Delta-G solvation = -51.787653 kcal Electronic energy + Delta-G solvation = -22102.847670 eV Core-core repulsion = 18898.767874 eV Total energy + Delta-G solvation = -3204.079796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85610 -38.43632 -36.88898 -33.87089 -33.43204 -31.75275 -30.71284 -29.39032 -27.58292 -26.88030 -25.39582 -23.45170 -22.62010 -21.28686 -20.97548 -20.19705 -18.56373 -16.98210 -16.53064 -16.06918 -15.86164 -15.72331 -14.85827 -14.67180 -14.61461 -14.33470 -14.03226 -13.61814 -13.33943 -13.10116 -12.85034 -12.57830 -12.38940 -12.20025 -12.11131 -12.05279 -11.88411 -11.63393 -11.55361 -11.13820 -11.06306 -10.94282 -10.92900 -10.87055 -10.62819 -10.54880 -9.91697 -9.62069 -9.13711 -8.97180 -8.66029 -8.34789 -8.27933 -5.93657 -3.97828 3.26630 3.30266 3.34273 3.41318 3.44912 3.57140 4.43072 4.47793 4.50511 4.55275 4.65902 4.70337 4.92735 5.00883 5.07513 5.12912 5.16814 5.22740 5.31546 5.36747 5.38182 5.41231 5.45473 5.47430 5.55806 5.60271 5.68511 5.74533 5.78905 5.84690 5.88653 5.91015 6.01366 6.16833 6.28260 6.29760 6.60767 6.70495 6.73797 6.93929 7.77691 7.89666 7.92216 8.10223 8.41593 8.79701 9.10924 9.65486 11.17393 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049356 B = 0.002427 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.166414 B =11533.451356 C =11811.608656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.054 3.946 4 N -0.540 5.540 5 C 0.018 3.982 6 C 0.067 3.933 7 C -0.099 4.099 8 H 0.086 0.914 9 C -0.112 4.112 10 C 0.100 3.900 11 N -0.631 5.631 12 C 0.526 3.474 13 O -0.535 6.535 14 C -0.124 4.124 15 C 0.036 3.964 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.111 3.889 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.497 -15.681 3.883 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.263 5.263 5 C -0.131 4.131 6 C -0.062 4.062 7 C -0.118 4.118 8 H 0.104 0.896 9 C -0.150 4.150 10 C -0.023 4.023 11 N -0.368 5.368 12 C 0.317 3.683 13 O -0.411 6.411 14 C -0.164 4.164 15 C -0.002 4.002 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.123 -15.216 3.924 28.790 hybrid contribution 0.542 0.334 0.102 0.645 sum -23.581 -14.882 4.027 28.174 Atomic orbital electron populations 1.21744 0.95686 1.01780 1.01771 1.21544 0.95303 0.96375 1.02713 1.22171 0.87108 0.97296 1.00789 1.61957 1.07377 1.22119 1.34891 1.22503 1.01194 0.99805 0.89551 1.22041 0.94311 0.88961 1.00842 1.22382 0.94691 0.96158 0.98603 0.89625 1.22561 0.95592 1.00816 0.96042 1.22032 0.97831 0.86679 0.95787 1.48711 1.16781 1.26439 1.44846 1.21326 0.82719 0.81524 0.82769 1.90668 1.80909 1.27048 1.42437 1.21843 0.93443 1.03209 0.97857 1.18919 0.90820 0.92604 0.97811 1.21263 1.00718 1.09351 1.25036 0.92537 1.25035 0.98610 0.95088 0.95737 1.70010 1.30035 1.13775 1.39037 0.86529 0.82752 0.78255 0.80389 1.19738 1.21028 1.21036 1.22077 0.86709 0.95869 0.96633 0.92632 0.92537 0.92931 0.91062 0.92001 0.95012 0.90794 0.95689 0.91212 0.90957 0.94457 0.90357 0.89893 0.90767 0.91446 0.91454 0.90348 0.90350 0.95833 0.95841 0.93028 0.90824 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.91 37.16 0.37 -0.39 16 2 C -0.12 -0.72 5.86 -26.73 -0.16 -0.88 16 3 C 0.05 0.36 4.96 -3.83 -0.02 0.34 16 4 N -0.54 -4.18 4.71 -242.92 -1.14 -5.32 16 5 C 0.02 0.13 9.15 60.07 0.55 0.68 16 6 C 0.07 0.55 4.41 -3.83 -0.02 0.53 16 7 C -0.10 -0.95 2.98 -88.47 -0.26 -1.22 16 8 H 0.09 0.85 6.30 -51.93 -0.33 0.53 16 9 C -0.11 -1.03 6.37 -24.90 -0.16 -1.19 16 10 C 0.10 1.19 6.49 -3.06 -0.02 1.17 16 11 N -0.63 -9.93 3.33 -170.51 -0.57 -10.50 16 12 C 0.53 10.91 7.85 -10.98 -0.09 10.82 16 13 O -0.54 -13.37 16.24 5.56 0.09 -13.28 16 14 C -0.12 -2.65 4.83 -27.88 -0.13 -2.79 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.53 -15.21 9.11 -34.44 -0.31 -15.52 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.85 13.29 55.43 0.74 -27.11 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.11 1.45 6.37 -2.53 -0.02 1.43 16 25 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.37 6.47 -51.92 -0.34 0.03 16 30 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 31 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.45 6.30 -51.92 -0.33 0.12 16 34 H 0.07 0.54 6.33 -51.93 -0.33 0.21 16 35 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.08 0.62 7.76 -51.93 -0.40 0.21 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 47 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -34.11 371.45 -9.63 -43.74 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -8.83 Total: -5.49 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -0.48 Total: -4.56 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.98 Total: -42.93 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.11 -9.63 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360317438.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.052 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds