Wall clock time and date at job start Tue Mar 31 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46902 * 109.46626 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00044 * 66.04918 * 4 3 2 6 6 C 1.46908 * 110.99486 * 190.00122 * 4 3 2 7 7 C 1.53002 * 109.46684 * 170.00155 * 6 4 3 8 8 H 1.09000 * 110.88585 * 57.42679 * 7 6 4 9 9 C 1.55152 * 111.00727 * 293.54315 * 7 6 4 10 10 C 1.54317 * 102.94599 * 206.42465 * 9 7 6 11 11 N 1.47024 * 107.26865 * 22.19341 * 10 9 7 12 12 C 1.34773 * 125.64864 * 181.01273 * 11 10 9 13 13 O 1.21285 * 120.00623 * 180.02562 * 12 11 10 14 14 C 1.50703 * 119.99991 * 0.02562 * 12 11 10 15 15 C 1.53001 * 109.47324 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47415 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99712 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00318 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99967 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00333 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47436 * 60.00029 * 20 18 16 22 22 H 1.48501 * 109.47370 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46814 * 299.99849 * 20 18 16 24 24 C 1.47424 * 108.70336 * 1.05707 * 11 10 9 25 25 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 30 30 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 31 31 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 32 32 H 1.09000 * 109.47532 * 59.99517 * 5 4 3 33 33 H 1.09001 * 109.47296 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47027 * 299.99634 * 5 4 3 35 35 H 1.08998 * 109.46834 * 289.99664 * 6 4 3 36 36 H 1.08991 * 109.47038 * 50.00085 * 6 4 3 37 37 H 1.08996 * 110.71913 * 324.79439 * 9 7 6 38 38 H 1.09007 * 110.72033 * 88.06246 * 9 7 6 39 39 H 1.08999 * 109.88598 * 141.60901 * 10 9 7 40 40 H 1.08997 * 109.88449 * 262.77584 * 10 9 7 41 41 H 1.08989 * 109.47512 * 300.00195 * 14 12 11 42 42 H 1.09006 * 109.46566 * 60.00330 * 14 12 11 43 43 H 1.09001 * 109.47324 * 300.00816 * 15 14 12 44 44 H 1.09003 * 109.47098 * 60.00116 * 15 14 12 45 45 H 0.96997 * 120.00123 * 180.02562 * 19 18 16 46 46 H 1.08998 * 110.36704 * 217.02919 * 24 11 10 47 47 H 1.09008 * 110.36418 * 94.71009 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0359 0.8857 -1.2524 6 6 4.0351 2.7933 0.2388 7 6 5.5441 2.7174 0.4804 8 1 6.0496 2.2479 -0.3635 9 6 5.8587 1.9699 1.8031 10 6 7.2225 2.5608 2.2181 11 7 7.3537 3.8652 1.5527 12 6 8.4152 4.6906 1.6445 13 8 8.4148 5.7477 1.0499 14 6 9.6029 4.3000 2.4860 15 6 10.6607 5.4034 2.4187 16 6 11.8485 5.0125 3.2596 17 1 11.8491 4.0711 3.7888 18 6 12.9349 5.8563 3.3526 19 7 12.9344 7.0025 2.7078 20 14 14.4077 5.3715 4.3944 21 1 14.9821 4.1026 3.8797 22 1 15.4343 6.4425 4.3292 23 1 13.9772 5.1844 5.8033 24 6 6.1314 4.1214 0.7693 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6765 1.9563 -0.8899 31 1 1.6765 1.9564 0.8900 32 1 3.6867 1.4864 -2.0923 33 1 5.1255 0.8979 -1.2256 34 1 3.6865 -0.1401 -1.3693 35 1 3.8376 3.4189 -0.6316 36 1 3.5483 3.2238 1.1138 37 1 5.1005 2.1835 2.5564 38 1 5.9400 0.8968 1.6297 39 1 7.2563 2.6913 3.2998 40 1 8.0265 1.8985 1.8974 41 1 9.2862 4.1624 3.5198 42 1 10.0252 3.3688 2.1083 43 1 10.9772 5.5407 1.3847 44 1 10.2386 6.3348 2.7960 45 1 13.6989 7.5960 2.7729 46 1 6.3779 4.6289 -0.1633 47 1 5.4259 4.7155 1.3505 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360317439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:59 Heat of formation + Delta-G solvation = -74.040039 kcal Electronic energy + Delta-G solvation = -22117.217420 eV Core-core repulsion = 18912.172688 eV Total energy + Delta-G solvation = -3205.044732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12397 -39.41812 -37.94871 -35.59072 -34.54913 -33.19922 -32.26057 -30.35138 -28.36810 -28.00669 -26.83252 -24.66456 -23.41864 -22.99278 -21.60167 -21.01244 -19.98807 -18.80987 -17.68703 -17.46100 -16.80128 -16.58091 -16.45998 -16.09803 -15.78503 -15.21114 -15.05328 -14.58538 -14.40901 -14.22748 -13.93865 -13.76483 -13.68469 -13.47174 -13.16899 -12.95929 -12.77901 -12.68623 -12.60843 -12.52031 -12.38269 -12.12567 -11.94748 -11.81145 -11.71047 -11.58312 -11.46201 -11.33749 -11.32014 -10.76268 -10.56588 -9.64024 -9.26072 -8.18223 -6.32964 1.41882 1.47018 1.54734 1.65463 2.02169 2.43412 2.89644 3.14240 3.57779 3.69152 3.82476 4.02598 4.08461 4.19170 4.31377 4.36172 4.38429 4.41275 4.47663 4.51447 4.55265 4.61082 4.62852 4.74232 4.76001 4.77495 4.89355 4.92705 4.96525 5.01219 5.06698 5.11176 5.21870 5.26041 5.34134 5.35860 5.44975 5.46827 5.50836 5.60161 5.83389 6.10537 6.15815 6.16234 6.50096 6.84886 7.22328 7.37272 8.94378 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048468 B = 0.002437 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.559015 B =11488.042885 C =11777.211921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.054 3.946 4 N -0.542 5.542 5 C 0.018 3.982 6 C 0.072 3.928 7 C -0.085 4.085 8 H 0.084 0.916 9 C -0.096 4.096 10 C 0.089 3.911 11 N -0.623 5.623 12 C 0.522 3.478 13 O -0.594 6.594 14 C -0.110 4.110 15 C 0.043 3.957 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.977 3.023 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.262 1.262 24 C 0.104 3.896 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.076 0.924 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.100 0.900 43 H -0.019 1.019 44 H -0.019 1.019 45 H 0.263 0.737 46 H 0.054 0.946 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.046 -18.588 -4.129 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.265 5.265 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.104 4.104 8 H 0.102 0.898 9 C -0.134 4.134 10 C -0.033 4.033 11 N -0.357 5.357 12 C 0.312 3.688 13 O -0.474 6.474 14 C -0.150 4.150 15 C 0.005 3.995 16 C -0.582 4.582 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.213 1.213 23 H -0.186 1.186 24 C -0.019 4.019 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.119 0.881 43 H -0.001 1.001 44 H 0.000 1.000 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.735 -18.146 -4.076 30.947 hybrid contribution 0.698 1.165 -0.576 1.475 sum -24.038 -16.981 -4.652 29.796 Atomic orbital electron populations 1.21729 0.95073 1.02138 1.01880 1.21493 0.95797 0.95698 1.02471 1.22212 0.86422 0.97871 1.00829 1.61978 1.07982 1.21395 1.35178 1.22511 1.00906 1.00368 0.89244 1.21944 0.93147 0.89511 1.01064 1.22258 0.95614 0.93252 0.99297 0.89801 1.22499 0.94089 1.00849 0.95980 1.22406 1.00110 0.82767 0.97998 1.48634 1.16687 1.20874 1.49469 1.21097 0.83830 0.82708 0.81124 1.90644 1.81870 1.26040 1.48872 1.21580 0.92352 1.01255 0.99812 1.18691 0.92867 0.92878 0.95038 1.21665 1.01736 1.05240 1.29577 0.90544 1.26181 1.02437 0.94731 0.97218 1.70181 1.31937 1.11563 1.44090 0.85329 0.77511 0.78008 0.79116 1.18609 1.21282 1.18612 1.22277 0.85911 0.98295 0.95379 0.92083 0.92472 0.92882 0.92027 0.91464 0.95202 0.90534 0.95986 0.91217 0.90357 0.94781 0.89714 0.89617 0.88138 0.90352 0.90529 0.88087 0.88137 1.00060 1.00030 0.92823 0.92784 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.14 5.86 30.60 0.18 -0.96 16 3 C 0.05 0.62 4.96 86.31 0.43 1.04 16 4 N -0.54 -7.06 4.59 -922.45 -4.23 -11.29 16 5 C 0.02 0.22 9.14 127.69 1.17 1.38 16 6 C 0.07 1.03 4.40 86.30 0.38 1.41 16 7 C -0.08 -1.46 2.90 -9.40 -0.03 -1.49 16 8 H 0.08 1.50 6.46 -2.39 -0.02 1.48 16 9 C -0.10 -1.46 6.25 31.78 0.20 -1.26 16 10 C 0.09 1.87 6.49 86.73 0.56 2.44 16 11 N -0.62 -19.16 3.33 -811.80 -2.70 -21.86 16 12 C 0.52 22.12 7.85 87.66 0.69 22.81 16 13 O -0.59 -31.38 16.24 -3.05 -0.05 -31.43 16 14 C -0.11 -4.74 4.83 29.85 0.14 -4.60 16 15 C 0.04 2.49 4.26 29.85 0.13 2.61 16 16 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 17 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 18 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 19 N -0.94 -60.58 13.29 21.45 0.28 -60.30 16 20 Si 0.98 44.87 29.54 68.60 2.03 46.90 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 C 0.10 2.67 6.38 86.85 0.55 3.22 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.60 6.55 -2.39 -0.02 0.59 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.03 0.36 8.12 -2.39 -0.02 0.34 16 31 H 0.08 0.83 7.93 -2.39 -0.02 0.82 16 32 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.07 0.89 6.28 -2.39 -0.01 0.88 16 34 H 0.08 0.83 6.47 -2.39 -0.02 0.81 16 35 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 36 H 0.08 1.13 7.90 -2.39 -0.02 1.11 16 37 H 0.09 1.18 8.01 -2.39 -0.02 1.16 16 38 H 0.10 1.26 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 42 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 43 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 44 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 45 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 46 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 47 H 0.07 1.69 8.04 -2.38 -0.02 1.67 16 Total: -1.00 -77.29 371.67 2.04 -75.25 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.90 Total: 8.19 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.81 Total: -5.46 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -6.65 Total: -93.44 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.05 Total: -31.43 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.29 2.04 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360317439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.206 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds