Wall clock time and date at job start Tue Mar 31 2020 06:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47256 * 2 1 4 4 N 1.46504 * 109.47376 * 180.02562 * 3 2 1 5 5 C 1.46499 * 120.00381 * 89.99779 * 4 3 2 6 6 C 1.53000 * 109.46840 * 90.00024 * 5 4 3 7 7 N 1.46901 * 109.46769 * 180.02562 * 6 5 4 8 8 C 1.48534 * 111.00172 * 52.60936 * 7 6 5 9 9 C 1.54933 * 103.22824 * 159.71827 * 8 7 6 10 10 C 1.54594 * 102.92252 * 322.58255 * 9 8 7 11 11 C 1.47912 * 110.99681 * 170.00135 * 7 6 5 12 12 C 1.34781 * 119.99832 * 270.00219 * 4 3 2 13 13 O 1.21281 * 120.00142 * 180.02562 * 12 4 3 14 14 C 1.50703 * 120.00021 * 359.97438 * 12 4 3 15 15 C 1.52994 * 109.47165 * 180.02562 * 14 12 4 16 16 C 1.50703 * 109.47165 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99847 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00224 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99938 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47151 * 59.99988 * 20 18 16 22 22 H 1.48501 * 109.47470 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.47197 * 300.00231 * 20 18 16 24 24 H 1.08989 * 109.47125 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46436 * 300.00151 * 1 2 3 26 26 H 1.09001 * 109.47081 * 59.99744 * 1 2 3 27 27 H 1.09003 * 109.47285 * 240.00196 * 2 1 3 28 28 H 1.08994 * 109.47442 * 120.00181 * 2 1 3 29 29 H 1.08999 * 109.47272 * 59.99803 * 3 2 1 30 30 H 1.09001 * 109.47285 * 300.00131 * 3 2 1 31 31 H 1.09001 * 109.46813 * 330.00298 * 5 4 3 32 32 H 1.08992 * 109.47397 * 210.00360 * 5 4 3 33 33 H 1.09002 * 109.47398 * 300.00326 * 6 5 4 34 34 H 1.09001 * 109.47194 * 60.00507 * 6 5 4 35 35 H 1.08997 * 110.66294 * 278.15766 * 8 7 6 36 36 H 1.09001 * 110.66815 * 41.27720 * 8 7 6 37 37 H 1.09002 * 110.72385 * 204.22928 * 9 8 7 38 38 H 1.09000 * 110.72461 * 80.94436 * 9 8 7 39 39 H 1.08997 * 110.31096 * 263.04565 * 10 9 8 40 40 H 1.09001 * 110.30483 * 140.87303 * 10 9 8 41 41 H 1.08997 * 109.91505 * 333.51116 * 11 7 6 42 42 H 1.08999 * 109.91449 * 94.60846 * 11 7 6 43 43 H 1.08997 * 109.47209 * 300.00559 * 14 12 4 44 44 H 1.09001 * 109.47189 * 59.99732 * 14 12 4 45 45 H 1.08999 * 109.47583 * 299.99809 * 15 14 12 46 46 H 1.09000 * 109.46983 * 60.00170 * 15 14 12 47 47 H 0.97011 * 120.00138 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2371 1.4427 -1.2696 6 6 4.4919 2.8852 -1.7111 7 7 5.2254 2.8854 -2.9839 8 6 4.5366 2.0436 -3.9954 9 6 5.1057 2.5660 -5.3384 10 6 5.2282 4.0875 -5.0934 11 6 5.2825 4.2454 -3.5626 12 6 4.1795 1.4423 1.1664 13 8 5.3923 1.4428 1.1659 14 6 3.4265 1.4426 2.4718 15 6 4.4211 1.4429 3.6343 16 6 3.6681 1.4439 4.9397 17 1 2.5881 1.4438 4.9401 18 6 4.3580 1.4449 6.1334 19 7 5.6731 1.4455 6.1329 20 14 3.4246 1.4468 7.7515 21 1 2.5705 0.2346 7.8318 22 1 4.3900 1.4470 8.8799 23 1 2.5712 2.6597 7.8293 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.6477 0.9289 -2.0291 32 1 5.1895 0.9288 -1.1397 33 1 3.5394 3.3991 -1.8410 34 1 5.0813 3.3990 -0.9517 35 1 4.7861 0.9919 -3.8549 36 1 3.4579 2.1933 -3.9504 37 1 4.4144 2.3614 -6.1559 38 1 6.0832 2.1278 -5.5396 39 1 4.3588 4.6068 -5.4966 40 1 6.1426 4.4711 -5.5460 41 1 4.4298 4.8311 -3.2191 42 1 6.2113 4.7349 -3.2695 43 1 2.8001 2.3328 2.5297 44 1 2.7994 0.5529 2.5298 45 1 5.0478 0.5530 3.5766 46 1 5.0477 2.3329 3.5760 47 1 6.1585 1.4458 6.9728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360612257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:54 Heat of formation + Delta-G solvation = -52.116823 kcal Electronic energy + Delta-G solvation = -22723.126941 eV Core-core repulsion = 19519.032871 eV Total energy + Delta-G solvation = -3204.094070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79369 -38.83578 -36.07384 -33.90550 -33.26931 -32.04749 -30.93558 -29.24272 -28.07003 -26.14268 -25.34177 -23.36315 -21.90288 -21.42401 -21.00777 -20.41948 -18.40582 -17.05071 -16.49533 -16.23652 -15.77434 -15.44530 -14.92406 -14.58783 -14.44458 -14.38409 -14.02864 -13.56739 -13.27495 -13.10287 -12.78261 -12.32209 -12.24442 -12.14938 -12.08998 -11.68183 -11.62916 -11.52853 -11.38011 -11.29696 -11.07357 -10.93705 -10.92250 -10.79338 -10.73847 -10.58145 -9.89058 -9.59647 -9.14503 -8.96244 -8.56866 -8.42794 -8.28907 -5.93517 -3.98020 3.18306 3.25582 3.35535 3.40328 3.41996 3.95850 4.41823 4.46359 4.48705 4.71999 4.82192 4.89794 4.97415 5.03293 5.13129 5.20621 5.27384 5.34355 5.37438 5.41155 5.44067 5.50107 5.53221 5.57230 5.61916 5.71779 5.74095 5.80177 5.92024 5.94213 6.00559 6.05311 6.06649 6.21292 6.25576 6.30890 6.70989 6.74234 6.89572 6.98113 7.76058 7.77652 7.89556 8.10151 8.41228 8.78884 9.10382 9.65273 11.17388 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.003436 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.102681 B = 8146.679194 C = 9144.342132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.112 3.888 4 N -0.626 5.626 5 C 0.118 3.882 6 C 0.035 3.965 7 N -0.513 5.513 8 C 0.030 3.970 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.036 3.964 12 C 0.511 3.489 13 O -0.528 6.528 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 1.830 -22.841 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.011 4.011 4 N -0.361 5.361 5 C -0.005 4.005 6 C -0.095 4.095 7 N -0.238 5.238 8 C -0.098 4.098 9 C -0.162 4.162 10 C -0.169 4.169 11 C -0.092 4.092 12 C 0.301 3.699 13 O -0.402 6.402 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.143 1.644 -22.566 23.727 hybrid contribution -1.419 0.374 0.758 1.652 sum -8.562 2.018 -21.808 23.516 Atomic orbital electron populations 1.21696 0.95259 1.01880 1.01850 1.21980 0.95996 0.97451 1.02908 1.21589 0.79719 0.96825 1.02972 1.48164 1.06341 1.75792 1.05828 1.21318 0.98334 0.95621 0.85241 1.22691 0.96356 0.98370 0.92048 1.64771 1.48079 1.08373 1.02601 1.23285 0.96335 0.98803 0.91350 1.22482 1.01694 0.95267 0.96753 1.22396 1.02132 0.96797 0.95570 1.22877 1.01659 0.90720 0.93992 1.21606 0.88443 0.74311 0.85556 1.90677 1.14344 1.47988 1.87205 1.21900 1.00664 1.02202 0.91996 1.18898 0.93170 0.98573 0.89382 1.21179 0.92842 1.51470 0.91037 0.92714 1.25019 0.94813 0.95340 0.99171 1.69990 1.06030 1.50112 1.26672 0.86667 0.79555 0.78519 0.83263 1.20265 1.21289 1.20267 0.92561 0.92219 0.92967 0.92062 0.91000 0.89751 0.91273 0.91333 0.89210 0.94846 0.89894 0.89833 0.93843 0.91192 0.90640 0.91663 0.90986 0.93845 0.90209 0.90428 0.90300 0.95862 0.95887 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.14 -1.54 6.26 -26.73 -0.17 -1.71 16 3 C 0.11 1.29 5.21 -4.04 -0.02 1.27 16 4 N -0.63 -9.36 2.47 -173.69 -0.43 -9.79 16 5 C 0.12 1.59 5.07 -4.04 -0.02 1.57 16 6 C 0.03 0.45 5.35 -3.82 -0.02 0.43 16 7 N -0.51 -6.02 5.40 -230.44 -1.24 -7.27 16 8 C 0.03 0.28 5.10 -1.90 -0.01 0.27 16 9 C -0.12 -0.96 7.06 -24.87 -0.18 -1.13 16 10 C -0.13 -1.02 6.93 -25.37 -0.18 -1.20 16 11 C 0.04 0.36 6.70 -2.75 -0.02 0.34 16 12 C 0.51 10.18 7.67 -10.98 -0.08 10.10 16 13 O -0.53 -12.79 15.56 5.56 0.09 -12.71 16 14 C -0.13 -2.66 4.19 -27.88 -0.12 -2.77 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.06 0.47 8.14 -51.94 -0.42 0.04 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.90 7.22 -51.93 -0.38 0.53 16 29 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 30 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.07 0.75 6.72 -51.93 -0.35 0.40 16 32 H 0.09 1.44 7.42 -51.93 -0.39 1.06 16 33 H 0.03 0.40 7.81 -51.93 -0.41 -0.01 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 0.76 7.66 -51.93 -0.40 0.36 16 36 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.04 0.42 7.57 -51.93 -0.39 0.03 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 44 H 0.08 1.51 7.19 -51.93 -0.37 1.14 16 45 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.60 371.04 -10.09 -43.70 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.84 Total: -2.70 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.97 Total: -6.65 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.94 Total: -44.02 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.60 -10.09 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360612257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.421 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds