Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47350 * 2 1 4 4 N 1.46906 * 109.46907 * 119.99996 * 2 1 3 5 5 C 1.46853 * 110.99832 * 299.21245 * 4 2 1 6 6 C 1.53033 * 109.52262 * 174.16246 * 5 4 2 7 7 C 1.53112 * 109.27992 * 59.17361 * 6 5 4 8 8 N 1.46501 * 109.52359 * 182.44184 * 7 6 5 9 9 C 1.46499 * 120.00131 * 59.68302 * 8 7 6 10 10 C 1.34781 * 119.99822 * 239.68650 * 8 7 6 11 11 O 1.21280 * 120.00210 * 359.97438 * 10 8 7 12 12 C 1.50702 * 119.99818 * 179.97438 * 10 8 7 13 13 C 1.53004 * 109.47187 * 179.97438 * 12 10 8 14 14 C 1.50703 * 109.46853 * 180.02562 * 13 12 10 15 15 H 1.07993 * 120.00416 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99622 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00085 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99973 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47084 * 89.99978 * 18 16 14 20 20 H 1.48502 * 109.47236 * 210.00127 * 18 16 14 21 21 H 1.48499 * 109.47245 * 330.00089 * 18 16 14 22 22 C 1.53120 * 109.16707 * 302.34582 * 7 6 5 23 23 C 1.46844 * 110.99887 * 175.00122 * 4 2 1 24 24 H 1.09004 * 109.47394 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47621 * 300.00357 * 1 2 3 26 26 H 1.09002 * 109.46731 * 60.00078 * 1 2 3 27 27 H 1.09000 * 109.47175 * 239.99799 * 2 1 3 28 28 H 1.08997 * 109.47474 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46922 * 300.00179 * 3 2 1 30 30 H 1.09006 * 109.46822 * 59.99467 * 3 2 1 31 31 H 1.09001 * 109.46125 * 294.17808 * 5 4 2 32 32 H 1.09003 * 109.46462 * 54.14202 * 5 4 2 33 33 H 1.09007 * 109.50330 * 299.23709 * 6 5 4 34 34 H 1.09002 * 109.50417 * 179.12117 * 6 5 4 35 35 H 1.09005 * 109.52421 * 62.25399 * 7 6 5 36 36 H 1.08998 * 109.46751 * 90.00054 * 9 8 7 37 37 H 1.09004 * 109.47430 * 210.00017 * 9 8 7 38 38 H 1.08999 * 109.47259 * 330.00228 * 9 8 7 39 39 H 1.09000 * 109.47249 * 300.00219 * 12 10 8 40 40 H 1.08998 * 109.47312 * 59.99975 * 12 10 8 41 41 H 1.09000 * 109.46870 * 299.99977 * 13 12 10 42 42 H 1.09003 * 109.46608 * 60.00202 * 13 12 10 43 43 H 0.96998 * 120.00198 * 179.97438 * 17 16 14 44 44 H 1.08996 * 109.49890 * 297.71825 * 22 7 6 45 45 H 1.08989 * 109.54077 * 177.61187 * 22 7 6 46 46 H 1.09000 * 109.46299 * 305.85220 * 23 4 2 47 47 H 1.08998 * 109.46010 * 65.83553 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5641 -0.0158 2.4206 6 6 1.9679 -0.8418 3.6440 7 6 3.4903 -1.0032 3.6650 8 7 3.8781 -1.8421 4.8017 9 6 3.3706 -3.2122 4.9077 10 6 4.7018 -1.3532 5.7500 11 8 5.1223 -0.2190 5.6620 12 6 5.1002 -2.2160 6.9196 13 6 6.0333 -1.4273 7.8407 14 6 6.4322 -2.2903 9.0099 15 1 6.0574 -3.3001 9.0885 16 6 7.2749 -1.7903 9.9800 17 7 7.6226 -2.5432 11.0006 18 14 7.9214 -0.0429 9.8451 19 1 6.9865 0.8850 10.5307 20 1 9.2593 0.0405 10.4843 21 1 8.0325 0.3347 8.4133 22 6 3.9436 -1.6665 2.3615 23 6 3.4826 -0.8164 1.1752 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.0227 0.9712 2.4814 32 1 0.4794 0.0889 2.3949 33 1 1.4986 -1.8242 3.5908 34 1 1.6434 -0.3315 4.5509 35 1 3.9593 -0.0235 3.7574 36 1 4.0567 -3.8937 4.4049 37 1 3.2888 -3.4891 5.9588 38 1 2.3887 -3.2734 4.4384 39 1 4.2089 -2.5128 7.4724 40 1 5.6153 -3.1052 6.5563 41 1 6.9245 -1.1309 7.2875 42 1 5.5185 -0.5378 8.2040 43 1 8.2157 -2.1916 11.6828 44 1 3.5053 -2.6617 2.2882 45 1 5.0306 -1.7458 2.3516 46 1 3.7913 -1.2934 0.2450 47 1 3.9321 0.1743 1.2421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361449024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = -44.283612 kcal Electronic energy + Delta-G solvation = -23053.536236 eV Core-core repulsion = 19849.781839 eV Total energy + Delta-G solvation = -3203.754397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28153 -38.99058 -36.18113 -33.83017 -33.38494 -31.36089 -31.12527 -29.86217 -27.56898 -26.77443 -26.25547 -24.06408 -23.30003 -21.36801 -20.45196 -19.32453 -18.64328 -17.14480 -16.71528 -16.14941 -15.69049 -15.44680 -15.15855 -14.67801 -14.36978 -14.10434 -13.83208 -13.70966 -13.37402 -13.12832 -12.99610 -12.55661 -12.53725 -12.28287 -12.26740 -12.22152 -12.05662 -11.66314 -11.43467 -11.33476 -11.23895 -11.06955 -10.94483 -10.63357 -10.55742 -10.10671 -9.99708 -9.76223 -9.19369 -9.09956 -8.53626 -8.49924 -8.42104 -6.01549 -3.99999 3.12035 3.22652 3.38943 3.45381 3.56759 3.59647 4.48425 4.52394 4.55946 4.68683 4.75995 4.90935 4.96849 5.04208 5.10403 5.17426 5.24617 5.26750 5.33333 5.34009 5.41993 5.44634 5.48708 5.53073 5.54228 5.62242 5.63649 5.75862 5.81253 5.87251 5.89946 5.96053 6.03874 6.09152 6.14738 6.23436 6.67960 6.78113 6.85223 6.86163 7.38935 7.45961 7.67214 7.81527 8.51454 8.66057 9.01670 9.61737 11.11312 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036148 B = 0.003164 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.402716 B = 8847.055915 C = 9198.008004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.189 4.189 4 N -0.532 5.532 5 C 0.053 3.947 6 C -0.125 4.125 7 C 0.138 3.862 8 N -0.622 5.622 9 C 0.079 3.921 10 C 0.511 3.489 11 O -0.542 6.542 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.123 4.123 23 C 0.058 3.942 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.018 0.982 43 H 0.263 0.737 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.977 2.451 -23.637 28.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.248 4.248 4 N -0.256 5.256 5 C -0.075 4.075 6 C -0.163 4.163 7 C 0.034 3.966 8 N -0.356 5.356 9 C -0.064 4.064 10 C 0.302 3.698 11 O -0.419 6.419 12 C -0.159 4.159 13 C -0.037 4.037 14 C -0.562 4.562 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.186 1.186 22 C -0.162 4.162 23 C -0.071 4.071 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -14.826 2.574 -23.493 27.899 hybrid contribution 0.702 1.580 0.038 1.730 sum -14.124 4.154 -23.455 27.693 Atomic orbital electron populations 1.21878 0.94308 1.02456 1.01662 1.21688 0.95778 0.92404 0.93373 1.22504 1.01670 0.98201 1.02438 1.62217 1.10745 1.50890 1.01752 1.22126 1.00610 0.95578 0.89194 1.21945 0.95752 1.01282 0.97353 1.21015 0.94495 0.95877 0.85211 1.48036 1.49265 1.14344 1.23970 1.21746 0.99137 0.82459 1.03096 1.21579 0.76709 0.88088 0.83441 1.90627 1.54228 1.19870 1.77156 1.21684 1.01691 0.99055 0.93509 1.19378 0.94453 0.95590 0.94238 1.21116 1.28952 1.00838 1.05252 0.90940 1.24972 0.95747 0.97584 0.94953 1.69911 1.35890 1.36779 1.11717 0.86798 0.78207 0.85351 0.79214 1.20259 1.21460 1.18550 1.21923 1.00970 0.99967 0.93317 1.22052 0.87308 0.98920 0.98800 0.91792 0.92467 0.92358 0.90034 0.92412 0.92120 0.92224 0.94394 0.90165 0.90719 0.91161 0.88703 0.92850 0.90463 0.91332 0.89673 0.89668 0.95902 0.96359 0.92741 0.90770 0.91169 0.90609 0.94420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.99 37.16 0.33 -0.60 16 2 C 0.08 0.56 2.96 -67.71 -0.20 0.36 16 3 C -0.19 -1.37 8.50 37.16 0.32 -1.06 16 4 N -0.53 -4.71 4.64 -226.68 -1.05 -5.76 16 5 C 0.05 0.49 4.63 -3.83 -0.02 0.47 16 6 C -0.12 -1.32 5.40 -26.66 -0.14 -1.46 16 7 C 0.14 1.75 2.59 -67.81 -0.18 1.58 16 8 N -0.62 -8.92 2.77 -173.79 -0.48 -9.40 16 9 C 0.08 0.86 9.26 59.85 0.55 1.41 16 10 C 0.51 9.69 7.67 -10.98 -0.08 9.61 16 11 O -0.54 -12.33 15.31 5.56 0.09 -12.24 16 12 C -0.12 -2.38 4.19 -27.88 -0.12 -2.50 16 13 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 14 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 18 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 22 C -0.12 -1.31 5.41 -26.65 -0.14 -1.45 16 23 C 0.06 0.53 5.02 -3.83 -0.02 0.51 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.38 6.30 -51.93 -0.33 0.05 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.06 0.45 6.65 -51.93 -0.35 0.11 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.47 6.52 -51.93 -0.34 0.13 16 31 H 0.04 0.38 6.62 -51.93 -0.34 0.03 16 32 H 0.08 0.66 6.03 -51.93 -0.31 0.35 16 33 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 38 H 0.07 0.61 6.37 -51.93 -0.33 0.28 16 39 H 0.09 1.57 7.40 -51.93 -0.38 1.18 16 40 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 41 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 42 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 44 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 45 H 0.07 0.81 8.14 -51.94 -0.42 0.38 16 46 H 0.08 0.62 8.08 -51.93 -0.42 0.21 16 47 H 0.04 0.37 6.73 -51.93 -0.35 0.02 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -33.34 352.24 -8.56 -41.91 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -8.31 Total: -3.83 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.22 Total: -6.71 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.76 Total: -42.61 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.34 -8.56 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361449024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.378 kcal (2) G-P(sol) polarization free energy of solvation -33.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds