Wall clock time and date at job start Tue Mar 31 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47503 * 2 1 4 4 H 1.09006 * 109.46968 * 304.99636 * 3 2 1 5 5 C 1.53005 * 109.47240 * 64.99894 * 3 2 1 6 6 C 1.52994 * 109.47168 * 184.99856 * 3 2 1 7 7 C 1.50701 * 109.47230 * 175.00031 * 6 3 2 8 8 O 1.21282 * 119.99885 * 359.97438 * 7 6 3 9 9 N 1.34781 * 120.00151 * 180.02562 * 7 6 3 10 10 C 1.46500 * 119.99926 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.46901 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.49323 * 55.06435 * 11 10 9 13 13 C 1.53042 * 109.49481 * 175.16216 * 11 10 9 14 14 C 1.53040 * 109.53785 * 181.31706 * 13 11 10 15 15 C 1.53192 * 109.31320 * 298.63731 * 14 13 11 16 16 N 1.46927 * 108.77560 * 54.63312 * 15 14 13 17 17 C 1.36943 * 120.63384 * 126.41328 * 16 15 14 18 18 H 1.08002 * 119.99508 * 331.82539 * 17 16 15 19 19 C 1.38813 * 120.00119 * 151.82015 * 17 16 15 20 20 N 1.31618 * 120.00154 * 343.08191 * 19 17 16 21 21 Si 1.86799 * 119.99757 * 163.08453 * 19 17 16 22 22 H 1.48493 * 109.47432 * 59.99855 * 21 19 17 23 23 H 1.48497 * 109.46917 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47019 * 299.99983 * 21 19 17 25 25 C 1.46925 * 118.74046 * 306.38954 * 16 15 14 26 26 H 1.08998 * 109.47643 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47239 * 300.00563 * 1 2 3 28 28 H 1.09007 * 109.46936 * 60.00229 * 1 2 3 29 29 H 1.09004 * 109.47143 * 239.99324 * 2 1 3 30 30 H 1.09004 * 109.46556 * 120.00438 * 2 1 3 31 31 H 1.08991 * 109.47236 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.46699 * 299.99999 * 5 3 2 33 33 H 1.08994 * 109.46938 * 59.99892 * 5 3 2 34 34 H 1.09000 * 109.47691 * 54.99791 * 6 3 2 35 35 H 1.08998 * 109.47311 * 294.99946 * 6 3 2 36 36 H 0.97001 * 119.99786 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47221 * 300.00253 * 10 9 7 38 38 H 1.08999 * 109.46993 * 60.00330 * 10 9 7 39 39 H 1.08994 * 109.45999 * 301.34183 * 13 11 10 40 40 H 1.08997 * 109.46005 * 61.29759 * 13 11 10 41 41 H 1.08992 * 109.49927 * 178.68342 * 14 13 11 42 42 H 1.09000 * 109.49244 * 58.58585 * 14 13 11 43 43 H 1.08996 * 109.58942 * 294.84932 * 15 14 13 44 44 H 1.08999 * 109.70357 * 174.48999 * 15 14 13 45 45 H 0.96996 * 120.00281 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.59172 * 293.82677 * 25 16 15 47 47 H 1.09004 * 109.70389 * 173.46341 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4441 -0.1257 7 6 4.0571 2.8631 -0.2492 8 8 3.2662 3.7825 -0.2383 9 7 5.3762 3.1105 -0.3728 10 6 5.8547 4.4899 -0.4935 11 6 7.3796 4.4916 -0.6190 12 1 7.6766 3.8552 -1.4526 13 6 7.8701 5.9201 -0.8658 14 6 9.3923 5.9184 -1.0243 15 6 10.0355 5.4025 0.2668 16 7 9.4608 4.0894 0.5896 17 6 10.2715 3.0070 0.8055 18 1 11.2381 2.9524 0.3270 19 6 9.8508 1.9802 1.6395 20 7 8.8524 2.1774 2.4741 21 14 10.7018 0.3185 1.5774 22 1 12.1391 0.4856 1.9110 23 1 10.0688 -0.5988 2.5587 24 1 10.5737 -0.2525 0.2126 25 6 7.9999 3.9596 0.6767 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 1.9983 3.1542 1.3072 32 1 0.5490 2.1253 1.3968 33 1 2.0699 1.5875 2.1491 34 1 3.8572 0.8798 -1.0112 35 1 4.0029 0.9834 0.7597 36 1 6.0088 2.3751 -0.3819 37 1 5.4163 4.9504 -1.3788 38 1 5.5628 5.0544 0.3921 39 1 7.4109 6.3099 -1.7742 40 1 7.5938 6.5501 -0.0204 41 1 9.7385 6.9325 -1.2232 42 1 9.6708 5.2689 -1.8542 43 1 9.8330 6.0997 1.0798 44 1 11.1123 5.3060 0.1279 45 1 8.5581 1.4598 3.0567 46 1 7.6314 4.5392 1.5231 47 1 7.7312 2.9113 0.8070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361950052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:58 Heat of formation + Delta-G solvation = -53.945240 kcal Electronic energy + Delta-G solvation = -23103.438960 eV Core-core repulsion = 19899.265603 eV Total energy + Delta-G solvation = -3204.173356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.67872 -37.86485 -36.34624 -34.53370 -33.06839 -31.23615 -30.48149 -29.80848 -27.68507 -25.44591 -25.20746 -23.76040 -22.16066 -20.89799 -20.30598 -19.71269 -18.97782 -16.92339 -16.55517 -15.78179 -15.41558 -15.14712 -14.75930 -14.24353 -14.09829 -13.80711 -13.66841 -13.52854 -12.99749 -12.89628 -12.52347 -12.33062 -12.25977 -12.17908 -11.91714 -11.70793 -11.35119 -11.20753 -11.03202 -10.82913 -10.74451 -10.62489 -10.56955 -10.51582 -10.26980 -10.18200 -9.94460 -9.68618 -9.46509 -9.34690 -8.65619 -8.51104 -6.70227 -5.83234 -3.26057 2.95291 3.33707 3.40000 3.41074 3.55166 4.44851 4.77301 4.80381 4.86639 5.15119 5.23176 5.24183 5.31567 5.46823 5.53767 5.57507 5.58360 5.60083 5.66670 5.71082 5.76848 5.81077 5.91489 5.97497 6.00925 6.04158 6.11717 6.18638 6.29025 6.29563 6.40692 6.42324 6.48683 6.54567 6.64934 6.77034 6.84577 6.86415 6.99912 7.29046 7.58543 7.74650 7.87522 8.40171 8.55780 9.16890 9.80126 10.37886 11.24683 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014865 B = 0.004514 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.116948 B = 6201.013678 C = 7701.213467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.075 0.925 5 C -0.154 4.154 6 C -0.140 4.140 7 C 0.511 3.489 8 O -0.550 6.550 9 N -0.721 5.721 10 C 0.131 3.869 11 C -0.128 4.128 12 H 0.069 0.931 13 C -0.100 4.100 14 C -0.133 4.133 15 C 0.143 3.857 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.180 3.820 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.405 0.595 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.018 0.982 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 -1.089 -6.251 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.094 0.906 5 C -0.211 4.211 6 C -0.180 4.180 7 C 0.298 3.702 8 O -0.429 6.429 9 N -0.372 5.372 10 C 0.007 3.993 11 C -0.148 4.148 12 H 0.087 0.913 13 C -0.138 4.138 14 C -0.172 4.172 15 C 0.017 3.983 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.054 3.946 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.422 -0.546 -6.096 12.959 hybrid contribution 0.835 -1.253 0.062 1.508 sum -10.587 -1.799 -6.034 12.318 Atomic orbital electron populations 1.21802 0.95922 1.01235 1.02001 1.21606 0.95974 0.96372 1.01940 1.20883 0.92941 0.95670 0.99753 0.90625 1.21992 1.00755 1.02386 0.95992 1.21779 0.97544 0.94410 1.04306 1.20633 0.82227 0.91494 0.75832 1.90623 1.54858 1.46755 1.50657 1.46111 1.07464 1.09894 1.73760 1.21355 0.94549 0.82403 1.01007 1.22141 0.92200 0.97618 1.02879 0.91306 1.21333 0.96199 0.96050 1.00254 1.21987 0.95405 0.99510 1.00299 1.20931 0.96299 0.88019 0.93081 1.44034 1.01406 1.04351 1.81706 1.19163 1.00685 0.96671 1.21752 0.91763 1.25033 0.98974 0.99762 0.95779 1.70031 1.29956 1.31778 1.22877 0.86405 0.79215 0.84106 0.77273 1.20872 1.21616 1.21042 1.20783 0.82747 1.01123 0.89938 0.93050 0.92416 0.92846 0.92110 0.91901 0.90624 0.93018 0.93349 0.89195 0.88744 0.76011 0.92537 0.91902 0.93456 0.92510 0.93082 0.92451 0.96525 0.92920 0.93587 0.96415 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.12 -1.15 5.40 -26.73 -0.14 -1.30 16 3 C -0.07 -0.85 2.04 -90.62 -0.18 -1.04 16 4 H 0.08 0.96 7.96 -51.93 -0.41 0.54 16 5 C -0.15 -1.92 8.69 37.16 0.32 -1.60 16 6 C -0.14 -1.70 5.17 -27.89 -0.14 -1.85 16 7 C 0.51 7.98 7.55 -10.98 -0.08 7.90 16 8 O -0.55 -10.11 13.97 5.56 0.08 -10.03 16 9 N -0.72 -11.40 5.33 -60.29 -0.32 -11.72 16 10 C 0.13 2.18 5.07 -4.04 -0.02 2.15 16 11 C -0.13 -2.29 2.38 -90.49 -0.21 -2.50 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 14 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 15 C 0.14 2.96 6.52 -3.71 -0.02 2.93 16 16 N -0.59 -14.41 2.99 -172.32 -0.52 -14.92 16 17 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 18 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.14 11.19 55.49 0.62 -24.51 16 21 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.18 4.05 4.39 -3.71 -0.02 4.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.14 5.95 -51.93 -0.31 0.83 16 32 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 6.20 7.70 -40.82 -0.31 5.88 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 2.12 5.26 -51.93 -0.27 1.85 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -29.47 361.39 -9.12 -38.59 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.72 Total: 4.59 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.68 Total: -3.31 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.22 Total: -51.16 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.47 -9.12 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361950052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.358 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds