Wall clock time and date at job start Tue Mar 31 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.09002 * 109.47054 * 304.99266 * 3 2 1 5 5 C 1.52999 * 109.47505 * 64.99853 * 3 2 1 6 6 C 1.53000 * 109.46932 * 184.99976 * 3 2 1 7 7 C 1.50704 * 109.46848 * 175.00050 * 6 3 2 8 8 O 1.21284 * 120.00311 * 359.97438 * 7 6 3 9 9 N 1.34778 * 119.99698 * 180.02562 * 7 6 3 10 10 C 1.46502 * 119.99916 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47199 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.49829 * 305.06548 * 11 10 9 13 13 C 1.53046 * 109.49742 * 185.00211 * 11 10 9 14 14 C 1.53038 * 109.53844 * 178.68762 * 13 11 10 15 15 C 1.53186 * 109.31408 * 61.36008 * 14 13 11 16 16 N 1.46920 * 108.78211 * 305.36815 * 15 14 13 17 17 C 1.36937 * 120.63585 * 233.60912 * 16 15 14 18 18 H 1.07999 * 120.00437 * 152.78505 * 17 16 15 19 19 C 1.38814 * 119.99649 * 332.79434 * 17 16 15 20 20 N 1.31617 * 119.99859 * 159.75208 * 19 17 16 21 21 Si 1.86800 * 120.00004 * 339.74765 * 19 17 16 22 22 H 1.48506 * 109.46944 * 94.89848 * 21 19 17 23 23 H 1.48499 * 109.47094 * 214.90041 * 21 19 17 24 24 H 1.48499 * 109.47089 * 334.90130 * 21 19 17 25 25 C 1.46935 * 118.73712 * 53.60353 * 16 15 14 26 26 H 1.09002 * 109.47087 * 60.00396 * 1 2 3 27 27 H 1.09010 * 109.47421 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47791 * 300.00274 * 1 2 3 29 29 H 1.08998 * 109.47251 * 239.99209 * 2 1 3 30 30 H 1.09002 * 109.47087 * 119.99604 * 2 1 3 31 31 H 1.09003 * 109.46493 * 299.99901 * 5 3 2 32 32 H 1.08997 * 109.47005 * 59.99535 * 5 3 2 33 33 H 1.08994 * 109.47057 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47332 * 54.99553 * 6 3 2 35 35 H 1.09003 * 109.47254 * 294.99305 * 6 3 2 36 36 H 0.96996 * 120.00487 * 359.97438 * 9 7 6 37 37 H 1.09005 * 109.47065 * 60.00037 * 10 9 7 38 38 H 1.08998 * 109.47148 * 300.00356 * 10 9 7 39 39 H 1.09007 * 109.45629 * 298.70579 * 13 11 10 40 40 H 1.08995 * 109.46114 * 58.67432 * 13 11 10 41 41 H 1.08998 * 109.49600 * 181.31681 * 14 13 11 42 42 H 1.09003 * 109.49427 * 301.41506 * 14 13 11 43 43 H 1.09004 * 109.58846 * 65.15868 * 15 14 13 44 44 H 1.09005 * 109.59109 * 185.57872 * 15 14 13 45 45 H 0.96997 * 120.00107 * 179.97438 * 20 19 17 46 46 H 1.08994 * 109.58497 * 186.60728 * 25 16 15 47 47 H 1.08999 * 109.58468 * 66.18235 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 3.5647 1.4443 -0.1257 7 6 4.0569 2.8633 -0.2492 8 8 3.2659 3.7827 -0.2383 9 7 5.3760 3.1107 -0.3729 10 6 5.8544 4.4901 -0.4935 11 6 7.3792 4.4919 -0.6191 12 1 7.8142 3.9524 0.2222 13 6 7.8900 5.9347 -0.6197 14 6 9.4176 5.9368 -0.7123 15 6 9.8465 5.2714 -2.0238 16 7 9.2395 3.9355 -2.0971 17 6 10.0142 2.8281 -2.3173 18 1 9.6943 1.8637 -1.9514 19 6 11.2110 2.9451 -3.0108 20 7 12.1350 2.0155 -2.8904 21 14 11.5101 4.4218 -4.1150 22 1 12.2532 5.4623 -3.3596 23 1 12.3072 4.0034 -5.2960 24 1 10.2077 4.9738 -4.5670 25 6 7.7851 3.8103 -1.9296 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.5488 2.1253 1.3967 32 1 2.0697 1.5876 2.1491 33 1 1.9981 3.1543 1.3070 34 1 3.8570 0.8799 -1.0112 35 1 4.0029 0.9836 0.7597 36 1 6.0086 2.3755 -0.3820 37 1 5.5625 5.0547 0.3921 38 1 5.4160 4.9506 -1.3788 39 1 7.4736 6.4669 -1.4750 40 1 7.5815 6.4295 0.3012 41 1 9.7820 6.9637 -0.6892 42 1 9.8338 5.3833 0.1295 43 1 9.5078 5.8735 -2.8669 44 1 10.9325 5.1811 -2.0497 45 1 12.9711 2.0971 -3.3752 46 1 7.5109 2.7560 -1.8932 47 1 7.2781 4.2932 -2.7649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361950053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:02 Heat of formation + Delta-G solvation = -47.617751 kcal Electronic energy + Delta-G solvation = -22778.399645 eV Core-core repulsion = 19574.500669 eV Total energy + Delta-G solvation = -3203.898976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.92439 -38.20413 -36.53552 -34.87304 -33.04980 -31.29938 -30.87031 -30.47344 -27.91443 -25.78300 -25.25590 -23.96920 -22.03871 -21.48768 -20.51576 -19.93032 -19.29220 -17.06650 -16.63377 -16.02320 -15.61164 -15.37325 -15.19946 -14.66599 -14.20114 -13.95597 -13.89720 -13.45619 -13.33464 -13.21423 -12.75175 -12.60004 -12.49087 -12.20904 -12.07851 -11.88808 -11.65465 -11.50694 -11.47531 -10.99657 -10.84064 -10.79111 -10.71733 -10.60140 -10.53336 -10.15707 -9.94301 -9.68408 -9.61528 -9.45129 -8.92928 -8.64996 -7.01055 -5.98417 -3.34464 2.71892 3.28776 3.30176 3.46635 3.49417 4.50231 4.60665 4.62352 4.71809 4.80289 5.04919 5.09801 5.14881 5.21742 5.27319 5.32286 5.38942 5.42773 5.49962 5.52711 5.60685 5.63323 5.77312 5.78882 5.81614 5.87991 5.89734 6.00843 6.03301 6.08491 6.12155 6.25683 6.28418 6.34219 6.36458 6.50072 6.55089 6.57204 6.67468 6.70044 6.94656 7.59972 7.91842 8.28257 8.31276 8.89952 9.68545 10.06570 11.17463 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.003343 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.424141 B = 8372.469240 C = 9122.056773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.140 4.140 7 C 0.511 3.489 8 O -0.545 6.545 9 N -0.727 5.727 10 C 0.128 3.872 11 C -0.119 4.119 12 H 0.077 0.923 13 C -0.101 4.101 14 C -0.134 4.134 15 C 0.124 3.876 16 N -0.606 5.606 17 C -0.261 4.261 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.157 3.843 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.263 0.737 46 H 0.060 0.940 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 0.256 7.225 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.211 4.211 6 C -0.180 4.180 7 C 0.298 3.702 8 O -0.423 6.423 9 N -0.378 5.378 10 C 0.004 3.996 11 C -0.140 4.140 12 H 0.096 0.904 13 C -0.139 4.139 14 C -0.174 4.174 15 C -0.001 4.001 16 N -0.329 5.329 17 C -0.389 4.389 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.552 5.552 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.031 3.969 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.239 0.761 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -18.009 0.834 7.164 19.400 hybrid contribution 0.773 0.417 -0.681 1.111 sum -17.236 1.251 6.483 18.457 Atomic orbital electron populations 1.21806 0.95847 1.01355 1.02028 1.21601 0.96073 0.96207 1.01987 1.20903 0.92860 0.95867 0.99795 0.90459 1.21992 1.00990 1.02179 0.95926 1.21787 0.97670 0.94199 1.04342 1.20690 0.82127 0.91609 0.75795 1.90646 1.54742 1.46756 1.50199 1.46144 1.07611 1.09783 1.74311 1.21404 0.94346 0.82408 1.01486 1.21945 0.92375 0.98116 1.01554 0.90423 1.21345 0.96417 0.95214 1.00910 1.21998 0.95148 0.99697 1.00515 1.21352 0.98043 0.86553 0.94197 1.44335 1.01602 1.03025 1.83963 1.18898 1.01519 0.88300 1.30202 0.89744 1.25265 0.96595 0.96976 0.98730 1.69828 1.06191 1.35647 1.43511 0.86931 0.77757 0.82803 0.81077 1.21693 1.23210 1.19476 1.20923 0.84974 0.98317 0.92732 0.92754 0.92955 0.92469 0.91937 0.91974 0.92879 0.93492 0.90738 0.88809 0.88969 0.76147 0.91992 0.91696 0.92357 0.92803 0.92691 0.91729 0.95693 0.91129 0.92754 0.92193 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.15 0.36 -0.76 16 2 C -0.12 -0.94 5.40 -26.74 -0.14 -1.09 16 3 C -0.08 -0.72 2.04 -90.62 -0.18 -0.91 16 4 H 0.08 0.86 7.95 -51.93 -0.41 0.44 16 5 C -0.15 -1.54 8.69 37.16 0.32 -1.22 16 6 C -0.14 -1.33 5.17 -27.88 -0.14 -1.47 16 7 C 0.51 6.52 7.55 -10.98 -0.08 6.44 16 8 O -0.55 -8.70 13.97 5.55 0.08 -8.63 16 9 N -0.73 -8.99 5.33 -60.29 -0.32 -9.31 16 10 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 11 C -0.12 -1.80 2.37 -90.50 -0.21 -2.02 16 12 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 14 C -0.13 -2.30 6.08 -26.62 -0.16 -2.46 16 15 C 0.12 2.65 4.19 -3.72 -0.02 2.64 16 16 N -0.61 -13.94 2.77 -172.32 -0.48 -14.41 16 17 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 18 H 0.08 2.42 8.05 -52.49 -0.42 2.00 16 19 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 20 N -0.91 -27.51 13.97 55.49 0.78 -26.73 16 21 Si 0.88 22.25 24.35 -169.99 -4.14 18.11 16 22 H -0.29 -7.05 6.70 56.52 0.38 -6.67 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.27 -6.68 6.45 56.52 0.36 -6.31 16 25 C 0.16 2.91 5.60 -3.71 -0.02 2.89 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.93 5.95 -51.93 -0.31 0.62 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 4.48 7.71 -40.82 -0.31 4.17 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.03 0.54 6.98 -51.93 -0.36 0.17 16 44 H 0.07 1.67 4.49 -51.93 -0.23 1.43 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.06 1.08 7.14 -51.93 -0.37 0.71 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -31.32 354.79 -8.07 -39.39 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.64 Total: 0.81 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.69 Total: -4.57 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.02 Total: -50.46 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.32 -8.07 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361950053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.226 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds