Wall clock time and date at job start Tue Mar 31 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 H 1.09001 * 109.46941 * 55.00348 * 3 2 1 5 5 C 1.52995 * 109.47316 * 295.00161 * 3 2 1 6 6 C 1.52996 * 109.47201 * 174.99639 * 3 2 1 7 7 C 1.50698 * 109.47515 * 185.00064 * 6 3 2 8 8 O 1.21280 * 119.99386 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00204 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00004 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47444 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.49563 * 305.06405 * 11 10 9 13 13 C 1.53042 * 109.50265 * 184.99872 * 11 10 9 14 14 C 1.53045 * 109.53911 * 178.68127 * 13 11 10 15 15 C 1.53186 * 109.31100 * 61.36917 * 14 13 11 16 16 N 1.46930 * 108.77325 * 305.36080 * 15 14 13 17 17 C 1.36941 * 120.63050 * 233.60967 * 16 15 14 18 18 H 1.07995 * 120.00053 * 151.82900 * 17 16 15 19 19 C 1.38813 * 119.99648 * 331.82619 * 17 16 15 20 20 N 1.31617 * 120.00500 * 343.08302 * 19 17 16 21 21 Si 1.86807 * 119.99678 * 163.08232 * 19 17 16 22 22 H 1.48504 * 109.46960 * 60.00047 * 21 19 17 23 23 H 1.48492 * 109.47085 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47010 * 300.00385 * 21 19 17 25 25 C 1.46920 * 118.74060 * 53.61530 * 16 15 14 26 26 H 1.09002 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46907 * 300.00055 * 1 2 3 28 28 H 1.08996 * 109.46664 * 59.99697 * 1 2 3 29 29 H 1.09000 * 109.46907 * 239.99945 * 2 1 3 30 30 H 1.09006 * 109.46703 * 120.00261 * 2 1 3 31 31 H 1.08998 * 109.46770 * 299.99907 * 5 3 2 32 32 H 1.09005 * 109.47246 * 59.99830 * 5 3 2 33 33 H 1.08999 * 109.47239 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47155 * 305.00669 * 6 3 2 35 35 H 1.09006 * 109.46891 * 65.00196 * 6 3 2 36 36 H 0.96992 * 120.00269 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47358 * 300.00234 * 10 9 7 38 38 H 1.09006 * 109.47178 * 60.00061 * 10 9 7 39 39 H 1.08999 * 109.45929 * 298.70491 * 13 11 10 40 40 H 1.09005 * 109.45772 * 58.67611 * 13 11 10 41 41 H 1.08999 * 109.49143 * 181.31845 * 14 13 11 42 42 H 1.08996 * 109.49764 * 301.41334 * 14 13 11 43 43 H 1.08994 * 109.58969 * 65.15161 * 15 14 13 44 44 H 1.09003 * 109.58441 * 185.57764 * 15 14 13 45 45 H 0.97003 * 119.99991 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.59140 * 186.60205 * 25 16 15 47 47 H 1.08995 * 109.59131 * 66.17323 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 6 4.0571 2.8632 0.2493 8 8 3.2661 3.7825 0.2383 9 7 5.3763 3.1106 0.3720 10 6 5.8547 4.4900 0.4927 11 6 7.3796 4.4919 0.6171 12 1 7.6775 3.8536 1.4489 13 6 7.8699 5.9198 0.8679 14 6 9.3923 5.9180 1.0252 15 6 10.0346 5.4065 -0.2680 16 7 9.4601 4.0941 -0.5943 17 6 10.2709 3.0126 -0.8139 18 1 9.9105 2.0162 -0.6051 19 6 11.5562 3.1971 -1.3047 20 7 11.8878 4.3393 -1.8684 21 14 12.8153 1.8242 -1.1652 22 1 12.3229 0.6255 -1.8905 23 1 14.1007 2.2691 -1.7608 24 1 13.0227 1.4863 0.2659 25 6 7.9992 3.9641 -0.6808 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0700 1.5875 -2.1491 32 1 0.5490 2.1253 -1.3969 33 1 1.9991 3.1540 -1.3075 34 1 3.8571 0.8799 1.0114 35 1 4.0030 0.9835 -0.7596 36 1 6.0089 2.3755 0.3805 37 1 5.5621 5.0549 -0.3924 38 1 5.4170 4.9503 1.3786 39 1 7.5927 6.5523 0.0246 40 1 7.4115 6.3065 1.7781 41 1 9.7382 6.9317 1.2271 42 1 9.6717 5.2661 1.8529 43 1 9.8313 6.1062 -1.0786 44 1 11.1112 5.3094 -0.1277 45 1 12.7861 4.4683 -2.2110 46 1 7.7327 2.9156 -0.8128 47 1 7.6298 4.5462 -1.5250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361950055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:09 Heat of formation + Delta-G solvation = -53.575364 kcal Electronic energy + Delta-G solvation = -22729.596118 eV Core-core repulsion = 19525.438801 eV Total energy + Delta-G solvation = -3204.157317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.86939 -37.92744 -36.47628 -34.72943 -33.00775 -31.13453 -30.46039 -30.19671 -27.79889 -25.46831 -25.22536 -23.86445 -22.12023 -21.02309 -20.48027 -19.86268 -19.02609 -17.02164 -16.56595 -15.92951 -15.60307 -15.11777 -14.85258 -14.49644 -14.21031 -13.94285 -13.74078 -13.43284 -13.18047 -12.81033 -12.65243 -12.41578 -12.28430 -12.18658 -12.04570 -11.82965 -11.47769 -11.28618 -11.02762 -10.96892 -10.77062 -10.71827 -10.69144 -10.51550 -10.25436 -10.19333 -9.95644 -9.74320 -9.47101 -9.43774 -8.86206 -8.48545 -6.69356 -5.81315 -3.24623 2.76063 3.34273 3.35563 3.41912 3.42479 4.45825 4.62451 4.65204 4.73110 5.03419 5.10740 5.14030 5.29293 5.33063 5.42653 5.43285 5.47451 5.53930 5.54286 5.61298 5.63775 5.80148 5.82854 5.88550 5.91247 5.95542 5.99622 6.07195 6.23320 6.27860 6.32449 6.36951 6.39394 6.57941 6.58089 6.70054 6.77157 6.84884 6.95536 7.38201 7.64382 7.66175 7.75749 8.36014 8.42281 9.18398 9.81919 10.39008 11.26933 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.003398 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.279625 B = 8239.148492 C = 9242.361045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.076 0.924 5 C -0.155 4.155 6 C -0.140 4.140 7 C 0.510 3.490 8 O -0.545 6.545 9 N -0.726 5.726 10 C 0.127 3.873 11 C -0.118 4.118 12 H 0.072 0.928 13 C -0.100 4.100 14 C -0.142 4.142 15 C 0.169 3.831 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.155 3.845 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.403 0.597 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.255 0.745 46 H 0.050 0.950 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 -4.993 5.178 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.212 4.212 6 C -0.180 4.180 7 C 0.297 3.703 8 O -0.424 6.424 9 N -0.377 5.377 10 C 0.003 3.997 11 C -0.138 4.138 12 H 0.091 0.909 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.043 3.957 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.028 3.972 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -16.775 -4.283 5.069 18.039 hybrid contribution 1.129 -1.021 0.033 1.522 sum -15.646 -5.303 5.101 17.290 Atomic orbital electron populations 1.21807 0.95848 1.01324 1.02051 1.21605 0.96072 0.96249 1.01927 1.20897 0.92848 0.95802 0.99830 0.90536 1.21997 1.00952 1.02301 0.95915 1.21785 0.97696 0.94259 1.04248 1.20675 0.82188 0.91571 0.75885 1.90645 1.54765 1.46754 1.50192 1.46143 1.07485 1.09857 1.74234 1.21431 0.94568 0.82248 1.01432 1.21951 0.91797 0.98466 1.01611 0.90945 1.21343 0.97006 0.95210 1.00221 1.22173 0.94660 0.99660 1.01606 1.20796 0.98849 0.85444 0.90578 1.44030 0.99300 1.07380 1.80671 1.19114 0.95082 0.87062 1.37247 0.91811 1.25050 0.99475 0.97121 0.97906 1.70027 1.19472 1.24804 1.40271 0.86376 0.80956 0.81614 0.77841 1.20882 1.21625 1.21021 1.20887 0.85920 0.97896 0.92500 0.92982 0.92795 0.92404 0.91922 0.92067 0.93396 0.92889 0.90655 0.89067 0.88856 0.76280 0.91731 0.92149 0.92504 0.93482 0.93190 0.92774 0.96447 0.89589 0.93544 0.93184 0.96414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.95 5.40 -26.73 -0.14 -1.10 16 3 C -0.07 -0.74 2.04 -90.63 -0.18 -0.92 16 4 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 5 C -0.15 -1.65 8.69 37.15 0.32 -1.33 16 6 C -0.14 -1.36 5.17 -27.89 -0.14 -1.51 16 7 C 0.51 6.77 7.55 -10.99 -0.08 6.69 16 8 O -0.55 -9.01 13.97 5.56 0.08 -8.94 16 9 N -0.73 -9.46 5.33 -60.30 -0.32 -9.78 16 10 C 0.13 1.85 5.07 -4.05 -0.02 1.83 16 11 C -0.12 -1.92 2.37 -90.50 -0.21 -2.13 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.10 -1.64 5.17 -26.69 -0.14 -1.77 16 14 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 15 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 16 N -0.59 -14.42 2.99 -172.33 -0.52 -14.94 16 17 C -0.26 -6.83 9.58 -15.06 -0.14 -6.98 16 18 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.92 11.20 55.49 0.62 -25.30 16 21 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.08 5.60 -3.71 -0.02 3.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.40 4.68 7.71 -40.82 -0.31 4.37 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -30.23 361.42 -9.12 -39.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.72 Total: 1.68 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.68 Total: -3.79 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.22 Total: -50.02 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.23 -9.12 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361950055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.223 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds