Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 N 1.46901 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.46847 * 111.00144 * 170.00079 * 4 3 2 6 6 C 1.53044 * 109.51335 * 185.83239 * 5 4 3 7 7 C 1.53117 * 109.27792 * 300.82256 * 6 5 4 8 8 N 1.46494 * 109.52184 * 177.62169 * 7 6 5 9 9 C 1.46500 * 120.00315 * 300.00441 * 8 7 6 10 10 C 1.34779 * 119.99886 * 120.00192 * 8 7 6 11 11 O 1.21283 * 119.99906 * 359.97438 * 10 8 7 12 12 C 1.50697 * 120.00145 * 180.02562 * 10 8 7 13 13 C 1.52999 * 109.47160 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47226 * 179.97438 * 13 12 10 15 15 H 1.07992 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99847 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00534 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99832 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47383 * 59.99699 * 18 16 14 20 20 H 1.48498 * 109.47476 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47015 * 299.99814 * 18 16 14 22 22 C 1.53127 * 109.15989 * 57.65607 * 7 6 5 23 23 C 1.46830 * 110.98168 * 294.21498 * 4 3 2 24 24 H 1.08999 * 109.47587 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47534 * 300.00388 * 1 2 3 26 26 H 1.08998 * 109.47460 * 59.99964 * 1 2 3 27 27 H 1.09002 * 109.47238 * 240.00072 * 2 1 3 28 28 H 1.08998 * 109.47460 * 120.00036 * 2 1 3 29 29 H 1.09001 * 109.47466 * 60.00169 * 3 2 1 30 30 H 1.09002 * 109.47083 * 299.99583 * 3 2 1 31 31 H 1.09002 * 109.46448 * 65.81961 * 5 4 3 32 32 H 1.08994 * 109.45958 * 305.84326 * 5 4 3 33 33 H 1.09001 * 109.49858 * 60.76701 * 6 5 4 34 34 H 1.09000 * 109.49965 * 180.88251 * 6 5 4 35 35 H 1.09004 * 109.52347 * 297.75632 * 7 6 5 36 36 H 1.08997 * 109.47378 * 89.99710 * 9 8 7 37 37 H 1.09003 * 109.46912 * 209.99987 * 9 8 7 38 38 H 1.08998 * 109.46854 * 329.99568 * 9 8 7 39 39 H 1.08996 * 109.47354 * 299.99485 * 12 10 8 40 40 H 1.09002 * 109.47373 * 60.00352 * 12 10 8 41 41 H 1.08997 * 109.47736 * 300.00033 * 13 12 10 42 42 H 1.09002 * 109.47155 * 59.99948 * 13 12 10 43 43 H 0.96996 * 119.99923 * 180.02562 * 17 16 14 44 44 H 1.08997 * 109.50037 * 62.28538 * 22 7 6 45 45 H 1.09000 * 109.49970 * 182.40199 * 22 7 6 46 46 H 1.08995 * 109.46742 * 54.13906 * 23 4 3 47 47 H 1.09004 * 109.45381 * 294.16241 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0351 2.7926 -0.2387 6 6 5.5580 2.7307 -0.3773 7 6 6.1589 2.1470 0.9044 8 7 7.6118 2.0324 0.7559 9 6 8.1759 1.2001 -0.3096 10 6 8.4296 2.6928 1.5995 11 8 7.9626 3.3823 2.4813 12 6 9.9242 2.5755 1.4464 13 6 10.6146 3.4173 2.5214 14 6 12.1092 3.2995 2.3687 15 1 12.5250 2.6860 1.5832 16 6 12.9457 3.9751 3.2318 17 7 12.4394 4.7218 4.1886 18 14 14.7984 3.8296 3.0421 19 1 15.1983 4.3189 1.6983 20 1 15.4685 4.6455 4.0862 21 1 15.2011 2.4080 3.1913 22 6 5.5581 0.7610 1.1553 23 6 4.0352 0.8800 1.2494 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7727 3.4378 0.5998 32 1 3.6031 3.1944 -1.1552 33 1 5.8208 2.0967 -1.2241 34 1 5.9499 3.7350 -0.5383 35 1 5.9291 2.8013 1.7454 36 1 8.3149 1.8033 -1.2068 37 1 9.1377 0.8005 0.0122 38 1 7.4949 0.3773 -0.5269 39 1 10.2199 1.5322 1.5560 40 1 10.2177 2.9348 0.4600 41 1 10.3189 4.4607 2.4115 42 1 10.3211 3.0586 3.5079 43 1 13.0279 5.1973 4.7955 44 1 5.8210 0.0961 0.3326 45 1 5.9501 0.3581 2.0892 46 1 3.6033 -0.1071 1.4137 47 1 3.7728 1.5343 2.0808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362191728.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = -53.579243 kcal Electronic energy + Delta-G solvation = -22634.623695 eV Core-core repulsion = 19430.466209 eV Total energy + Delta-G solvation = -3204.157485 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06237 -38.63366 -35.93866 -34.07000 -33.44828 -31.66595 -31.02633 -30.50275 -26.97921 -26.36465 -25.35386 -23.65690 -23.07542 -21.47600 -20.96105 -19.65670 -18.52510 -16.91693 -16.55938 -15.88455 -15.74042 -15.27265 -15.20449 -14.92350 -14.42812 -14.24786 -13.87051 -13.63046 -13.12767 -13.07537 -12.99574 -12.54966 -12.44990 -12.13896 -12.12588 -12.08832 -11.91212 -11.55424 -11.31436 -11.12688 -11.08691 -11.05419 -10.89718 -10.63076 -10.57593 -10.45836 -9.91782 -9.59303 -9.14596 -8.94487 -8.55800 -8.35486 -8.28324 -5.93978 -3.98386 3.25500 3.31131 3.35636 3.40343 3.42364 3.62103 4.48538 4.52301 4.60834 4.72289 4.84049 4.90770 5.01883 5.05362 5.16613 5.20736 5.27543 5.34315 5.37189 5.40584 5.40902 5.48949 5.51524 5.58132 5.63220 5.64654 5.70950 5.79267 5.85008 5.88157 5.95264 5.96448 6.09197 6.24524 6.27733 6.30055 6.79798 6.86612 6.87778 6.95161 7.76219 7.79981 7.89047 8.09663 8.40995 8.78932 9.10050 9.64876 11.16947 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050095 B = 0.002683 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.801367 B =10435.369430 C =10550.814500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.059 3.941 6 C -0.123 4.123 7 C 0.138 3.862 8 N -0.624 5.624 9 C 0.080 3.920 10 C 0.511 3.489 11 O -0.536 6.536 12 C -0.127 4.127 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.124 4.124 23 C 0.056 3.944 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.341 -10.070 -11.714 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.069 4.069 6 C -0.162 4.162 7 C 0.034 3.966 8 N -0.359 5.359 9 C -0.063 4.063 10 C 0.302 3.698 11 O -0.412 6.412 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.072 4.072 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -21.351 -9.857 -11.453 26.158 hybrid contribution 0.767 0.432 0.499 1.012 sum -20.584 -9.425 -10.954 25.150 Atomic orbital electron populations 1.21739 0.95701 1.01751 1.01744 1.21551 0.95283 0.96429 1.02719 1.22138 0.87173 0.97246 1.00762 1.61974 1.07127 1.22152 1.35185 1.22042 0.95217 0.88877 1.00763 1.21923 0.94011 1.01747 0.98478 1.21000 0.80142 0.96855 0.98636 1.48072 1.05480 1.49471 1.32880 1.21711 0.99620 0.94614 0.90342 1.21610 0.90408 0.77795 0.80018 1.90646 1.77734 1.39396 1.33393 1.21875 0.88354 1.02936 1.03537 1.18900 0.93658 0.94899 0.92595 1.21187 0.91385 1.29090 1.14854 0.92667 1.25031 0.98785 0.95316 0.95287 1.69989 1.35040 1.30257 1.17581 0.86649 0.85510 0.78030 0.77712 1.20251 1.21307 1.20257 1.21940 0.94137 0.97636 1.02597 1.22099 0.95063 1.00003 0.90018 0.92554 0.92881 0.92707 0.91128 0.91926 0.94943 0.90860 0.94660 0.90564 0.90808 0.91103 0.88653 0.93013 0.90607 0.91465 0.90293 0.90315 0.95902 0.95907 0.92915 0.90753 0.91094 0.90264 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.15 0.37 -0.51 16 2 C -0.12 -0.85 5.86 -26.73 -0.16 -1.01 16 3 C 0.05 0.43 4.96 -3.82 -0.02 0.42 16 4 N -0.54 -5.13 4.66 -234.68 -1.09 -6.22 16 5 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 6 C -0.12 -1.38 5.41 -26.65 -0.14 -1.53 16 7 C 0.14 1.85 2.59 -67.81 -0.18 1.68 16 8 N -0.62 -9.46 2.77 -173.79 -0.48 -9.94 16 9 C 0.08 0.92 9.26 59.85 0.55 1.47 16 10 C 0.51 10.27 7.67 -10.99 -0.08 10.19 16 11 O -0.54 -13.02 15.31 5.55 0.09 -12.93 16 12 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 14 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.12 -1.39 5.40 -26.65 -0.14 -1.54 16 23 C 0.06 0.56 5.29 -3.84 -0.02 0.54 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 29 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.07 0.54 7.99 -51.93 -0.41 0.13 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.66 8.01 -51.93 -0.42 0.24 16 33 H 0.07 0.79 7.60 -51.93 -0.39 0.39 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.56 6.90 -51.93 -0.36 1.20 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 38 H 0.07 0.63 6.38 -51.93 -0.33 0.30 16 39 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 40 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.69 6.21 -51.93 -0.32 0.37 16 47 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -33.47 363.43 -9.45 -42.91 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.66 Total: -3.67 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.49 Total: -5.45 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.84 Total: -43.15 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.47 -9.45 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362191728.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.666 kcal (2) G-P(sol) polarization free energy of solvation -33.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds