Wall clock time and date at job start Tue Mar 31 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.47153 * 2 1 4 4 H 1.08997 * 109.46935 * 54.99886 * 3 2 1 5 5 C 1.52994 * 109.46854 * 174.99828 * 3 2 1 6 6 N 1.46500 * 109.46850 * 295.00098 * 3 2 1 7 7 C 1.34777 * 119.99572 * 154.99874 * 6 3 2 8 8 O 1.21283 * 120.00301 * 0.02562 * 7 6 3 9 9 C 1.50701 * 119.99843 * 179.97438 * 7 6 3 10 10 H 1.09002 * 109.46767 * 45.28254 * 9 7 6 11 11 C 1.53003 * 109.47537 * 285.28096 * 9 7 6 12 12 N 1.46897 * 109.47101 * 165.27833 * 9 7 6 13 13 C 1.46842 * 111.00388 * 196.44271 * 12 9 7 14 14 C 1.53035 * 109.52625 * 174.16117 * 13 12 9 15 15 C 1.53120 * 109.27825 * 59.18215 * 14 13 12 16 16 C 1.50697 * 109.52199 * 182.43825 * 15 14 13 17 17 H 1.08000 * 119.99632 * 119.68439 * 16 15 14 18 18 C 1.37875 * 120.00394 * 299.68195 * 16 15 14 19 19 N 1.31518 * 120.00086 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00001 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47409 * 89.99660 * 20 18 16 22 22 H 1.48495 * 109.47128 * 210.00058 * 20 18 16 23 23 H 1.48505 * 109.46951 * 330.00121 * 20 18 16 24 24 C 1.53122 * 109.16033 * 302.34455 * 15 14 13 25 25 C 1.46854 * 111.00027 * 72.23452 * 12 9 7 26 26 H 1.09003 * 109.47192 * 300.00050 * 1 2 3 27 27 H 1.09006 * 109.47378 * 59.99970 * 1 2 3 28 28 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47192 * 239.99950 * 2 1 3 30 30 H 1.08996 * 109.47530 * 119.99995 * 2 1 3 31 31 H 1.08994 * 109.47742 * 300.00186 * 5 3 2 32 32 H 1.08995 * 109.47073 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.47412 * 60.00114 * 5 3 2 34 34 H 0.96999 * 120.00206 * 334.99158 * 6 3 2 35 35 H 1.08994 * 109.46818 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.46845 * 300.00350 * 11 9 7 37 37 H 1.08999 * 109.46543 * 60.00226 * 11 9 7 38 38 H 1.08996 * 109.46306 * 294.18154 * 13 12 9 39 39 H 1.09008 * 109.46353 * 54.14732 * 13 12 9 40 40 H 1.09004 * 109.50501 * 299.23843 * 14 13 12 41 41 H 1.09002 * 109.50639 * 179.12182 * 14 13 12 42 42 H 1.09005 * 109.52303 * 62.24862 * 15 14 13 43 43 H 0.96995 * 120.00016 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.50218 * 297.71868 * 24 15 14 45 45 H 1.08997 * 109.50479 * 177.59205 * 24 15 14 46 46 H 1.09002 * 109.46179 * 305.85862 * 25 12 9 47 47 H 1.08999 * 109.46225 * 65.82084 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4443 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7327 4.1029 -0.3063 9 6 1.1274 4.1123 -2.5874 10 1 0.2961 3.5707 -3.0388 11 6 2.3166 4.1159 -3.5500 12 7 0.7177 5.4954 -2.3100 13 6 -0.0339 6.0582 -3.4390 14 6 -0.5675 7.4414 -3.0596 15 6 0.6071 8.3548 -2.6982 16 6 0.0842 9.7004 -2.2661 17 1 0.2966 10.0688 -1.2733 18 6 -0.6653 10.4613 -3.1380 19 7 -1.1221 11.6355 -2.7606 20 14 -1.0333 9.8239 -4.8548 21 1 -2.2997 9.0485 -4.8342 22 1 -1.1696 10.9696 -5.7896 23 1 0.0769 8.9466 -5.3056 24 6 1.4015 7.7223 -1.5521 25 6 1.8780 6.3310 -1.9753 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8531 0.9570 1.0571 32 1 3.9281 2.4719 0.1253 33 1 3.9994 0.9053 -0.7161 34 1 1.4871 1.5661 -2.0463 35 1 2.0283 4.6029 -4.4816 36 1 3.1478 4.6574 -3.0985 37 1 2.6205 3.0896 -3.7559 38 1 0.6230 6.1472 -4.3042 39 1 -0.8688 5.4013 -3.6832 40 1 -1.2355 7.3513 -2.2029 41 1 -1.1121 7.8654 -3.9033 42 1 1.2546 8.4763 -3.5666 43 1 -1.6491 12.1709 -3.3741 44 1 0.7645 7.6366 -0.6718 45 1 2.2637 8.3469 -1.3188 46 1 2.4319 5.8721 -1.1563 47 1 2.5260 6.4187 -2.8474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397244448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:53 Heat of formation + Delta-G solvation = -44.462374 kcal Electronic energy + Delta-G solvation = -23571.588376 eV Core-core repulsion = 20367.826227 eV Total energy + Delta-G solvation = -3203.762148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27166 -38.35839 -36.43626 -34.49298 -32.63087 -31.82634 -30.22587 -30.12262 -29.21456 -25.92971 -24.57807 -23.68194 -22.60616 -21.57024 -20.80073 -20.09903 -18.52622 -17.02713 -16.59527 -16.54518 -15.53472 -15.18205 -14.54788 -14.30566 -14.19351 -14.05638 -13.93118 -13.64641 -13.41598 -13.17997 -12.76764 -12.66729 -12.37221 -12.18396 -12.08278 -11.93941 -11.71163 -11.62488 -11.49955 -11.38496 -11.24276 -10.97020 -10.81155 -10.34401 -10.01219 -9.86551 -9.63996 -9.52103 -9.13628 -8.89353 -8.79594 -8.44889 -7.84776 -5.99076 -3.96615 2.75236 3.03362 3.30640 3.40026 3.43067 4.28267 4.40539 4.47281 4.68650 4.76174 4.78491 4.99439 5.05246 5.15701 5.28982 5.31503 5.33028 5.46197 5.48577 5.54200 5.60966 5.62754 5.64087 5.79475 5.82891 5.86208 5.91982 6.01174 6.03213 6.06982 6.22435 6.31077 6.43223 6.50552 6.60910 6.83425 6.95895 7.00833 7.34274 7.35776 7.54938 7.61704 7.74775 7.87708 8.34270 8.63713 9.06757 9.64079 11.14723 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.003759 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.941342 B = 7446.230965 C = 7594.843931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.163 4.163 6 N -0.731 5.731 7 C 0.523 3.477 8 O -0.514 6.514 9 C 0.063 3.937 10 H 0.097 0.903 11 C -0.180 4.180 12 N -0.511 5.511 13 C 0.056 3.944 14 C -0.115 4.115 15 C 0.013 3.987 16 C -0.507 4.507 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.905 5.905 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.094 4.094 25 C 0.052 3.948 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.459 -25.641 -0.071 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.385 5.385 7 C 0.308 3.692 8 O -0.388 6.388 9 C -0.050 4.050 10 H 0.115 0.885 11 C -0.239 4.239 12 N -0.236 5.236 13 C -0.072 4.072 14 C -0.153 4.153 15 C -0.006 4.006 16 C -0.545 4.545 17 H 0.091 0.909 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.227 1.227 23 H -0.193 1.193 24 C -0.132 4.132 25 C -0.075 4.075 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.229 0.771 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.191 -24.965 1.039 25.742 hybrid contribution 0.066 -0.546 -2.152 2.221 sum 6.257 -25.511 -1.113 26.291 Atomic orbital electron populations 1.21775 0.95240 1.01538 1.02528 1.21826 0.96635 0.95522 1.02798 1.20953 0.94711 0.92839 0.87873 0.89380 1.22178 0.95604 1.02709 1.01680 1.46103 1.72090 1.07057 1.13276 1.20601 0.76399 0.81706 0.90462 1.90679 1.48161 1.63557 1.36361 1.21612 0.97980 0.93080 0.92333 0.88482 1.22377 0.99065 1.02428 1.00018 1.61838 1.24314 0.99079 1.38336 1.22239 0.96376 0.97770 0.90773 1.22008 1.00391 0.92245 1.00625 1.19197 0.92651 0.94342 0.94424 1.21096 1.32133 0.99711 1.01525 0.90869 1.25038 0.95488 0.94736 0.98162 1.69910 1.36661 1.11631 1.36146 0.86838 0.78925 0.77438 0.84958 1.20611 1.22680 1.19271 1.21460 0.99582 0.92243 0.99868 1.22384 0.90897 0.94984 0.99281 0.92453 0.92463 0.92699 0.91586 0.90569 0.91845 0.91945 0.92698 0.77074 0.91308 0.91294 0.92117 0.95477 0.92053 0.91204 0.93404 0.96168 0.92829 0.91793 0.92571 0.89900 0.95798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.80 37.15 0.36 -0.67 16 2 C -0.13 -0.80 5.47 -26.73 -0.15 -0.95 16 3 C 0.14 1.24 2.57 -67.93 -0.17 1.07 16 4 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 5 C -0.16 -1.37 9.48 37.15 0.35 -1.02 16 6 N -0.73 -6.83 4.53 -53.80 -0.24 -7.07 16 7 C 0.52 7.01 6.93 -10.98 -0.08 6.93 16 8 O -0.51 -9.09 13.97 5.56 0.08 -9.02 16 9 C 0.06 0.82 2.70 -68.86 -0.19 0.63 16 10 H 0.10 1.06 7.86 -51.93 -0.41 0.66 16 11 C -0.18 -2.00 8.30 37.16 0.31 -1.69 16 12 N -0.51 -8.86 4.35 -228.08 -0.99 -9.85 16 13 C 0.06 1.00 5.22 -3.84 -0.02 0.98 16 14 C -0.12 -2.55 4.84 -26.65 -0.13 -2.68 16 15 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 16 C -0.51 -14.68 9.14 -34.44 -0.31 -14.99 16 17 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 18 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 19 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 20 Si 0.89 22.36 24.37 -169.99 -4.14 18.21 16 21 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 22 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 23 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 24 C -0.09 -2.04 5.32 -26.65 -0.14 -2.18 16 25 C 0.05 0.95 4.17 -3.83 -0.02 0.94 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.40 2.62 8.60 -40.82 -0.35 2.27 16 35 H 0.07 0.79 7.09 -51.93 -0.37 0.42 16 36 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.03 0.47 7.13 -51.93 -0.37 0.10 16 39 H 0.06 0.96 7.95 -51.92 -0.41 0.55 16 40 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.05 1.10 3.38 -51.93 -0.18 0.93 16 42 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 44 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 46 H 0.08 1.55 5.90 -51.93 -0.31 1.25 16 47 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -33.21 352.18 -8.14 -41.36 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.49 Total: 0.30 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.44 Total: -11.63 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.46 Total: -44.53 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.21 -8.14 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.105 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds