Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.47153 * 2 1 4 4 H 1.08997 * 109.46935 * 54.99886 * 3 2 1 5 5 C 1.52994 * 109.46854 * 174.99828 * 3 2 1 6 6 N 1.46500 * 109.46850 * 295.00098 * 3 2 1 7 7 C 1.34777 * 119.99572 * 154.99874 * 6 3 2 8 8 O 1.21283 * 120.00301 * 0.02562 * 7 6 3 9 9 C 1.50701 * 119.99843 * 179.97438 * 7 6 3 10 10 H 1.09002 * 109.46767 * 45.28254 * 9 7 6 11 11 C 1.53003 * 109.47537 * 285.28096 * 9 7 6 12 12 N 1.46897 * 109.47101 * 165.27833 * 9 7 6 13 13 C 1.46842 * 111.00388 * 196.44271 * 12 9 7 14 14 C 1.53035 * 109.52625 * 174.16117 * 13 12 9 15 15 C 1.53120 * 109.27825 * 59.18215 * 14 13 12 16 16 C 1.50697 * 109.52199 * 182.43825 * 15 14 13 17 17 H 1.08000 * 119.99632 * 119.68439 * 16 15 14 18 18 C 1.37875 * 120.00394 * 299.68195 * 16 15 14 19 19 N 1.31518 * 120.00086 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00001 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47409 * 89.99660 * 20 18 16 22 22 H 1.48495 * 109.47128 * 210.00058 * 20 18 16 23 23 H 1.48505 * 109.46951 * 330.00121 * 20 18 16 24 24 C 1.53122 * 109.16033 * 302.34455 * 15 14 13 25 25 C 1.46854 * 111.00027 * 72.23452 * 12 9 7 26 26 H 1.09003 * 109.47192 * 300.00050 * 1 2 3 27 27 H 1.09006 * 109.47378 * 59.99970 * 1 2 3 28 28 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47192 * 239.99950 * 2 1 3 30 30 H 1.08996 * 109.47530 * 119.99995 * 2 1 3 31 31 H 1.08994 * 109.47742 * 300.00186 * 5 3 2 32 32 H 1.08995 * 109.47073 * 179.97438 * 5 3 2 33 33 H 1.09006 * 109.47412 * 60.00114 * 5 3 2 34 34 H 0.96999 * 120.00206 * 334.99158 * 6 3 2 35 35 H 1.08994 * 109.46818 * 179.97438 * 11 9 7 36 36 H 1.08993 * 109.46845 * 300.00350 * 11 9 7 37 37 H 1.08999 * 109.46543 * 60.00226 * 11 9 7 38 38 H 1.08996 * 109.46306 * 294.18154 * 13 12 9 39 39 H 1.09008 * 109.46353 * 54.14732 * 13 12 9 40 40 H 1.09004 * 109.50501 * 299.23843 * 14 13 12 41 41 H 1.09002 * 109.50639 * 179.12182 * 14 13 12 42 42 H 1.09005 * 109.52303 * 62.24862 * 15 14 13 43 43 H 0.96995 * 120.00016 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.50218 * 297.71868 * 24 15 14 45 45 H 1.08997 * 109.50479 * 177.59205 * 24 15 14 46 46 H 1.09002 * 109.46179 * 305.85862 * 25 12 9 47 47 H 1.08999 * 109.46225 * 65.82084 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4443 0.1258 6 7 1.6524 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.7327 4.1029 -0.3063 9 6 1.1274 4.1123 -2.5874 10 1 0.2961 3.5707 -3.0388 11 6 2.3166 4.1159 -3.5500 12 7 0.7177 5.4954 -2.3100 13 6 -0.0339 6.0582 -3.4390 14 6 -0.5675 7.4414 -3.0596 15 6 0.6071 8.3548 -2.6982 16 6 0.0842 9.7004 -2.2661 17 1 0.2966 10.0688 -1.2733 18 6 -0.6653 10.4613 -3.1380 19 7 -1.1221 11.6355 -2.7606 20 14 -1.0333 9.8239 -4.8548 21 1 -2.2997 9.0485 -4.8342 22 1 -1.1696 10.9696 -5.7896 23 1 0.0769 8.9466 -5.3056 24 6 1.4015 7.7223 -1.5521 25 6 1.8780 6.3310 -1.9753 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8531 0.9570 1.0571 32 1 3.9281 2.4719 0.1253 33 1 3.9994 0.9053 -0.7161 34 1 1.4871 1.5661 -2.0463 35 1 2.0283 4.6029 -4.4816 36 1 3.1478 4.6574 -3.0985 37 1 2.6205 3.0896 -3.7559 38 1 0.6230 6.1472 -4.3042 39 1 -0.8688 5.4013 -3.6832 40 1 -1.2355 7.3513 -2.2029 41 1 -1.1121 7.8654 -3.9033 42 1 1.2546 8.4763 -3.5666 43 1 -1.6491 12.1709 -3.3741 44 1 0.7645 7.6366 -0.6718 45 1 2.2637 8.3469 -1.3188 46 1 2.4319 5.8721 -1.1563 47 1 2.5260 6.4187 -2.8474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397244448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = -68.665017 kcal Electronic energy + Delta-G solvation = -23572.637881 eV Core-core repulsion = 20367.826227 eV Total energy + Delta-G solvation = -3204.811654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35834 -39.65770 -37.37138 -36.07860 -34.14849 -33.18167 -31.75857 -31.12167 -30.29983 -27.55896 -25.70457 -24.56866 -24.14932 -23.02918 -21.67476 -21.21922 -20.15833 -18.86227 -17.92800 -17.61670 -16.84697 -16.20874 -16.12923 -15.58895 -15.36793 -15.04568 -14.96425 -14.77527 -14.65612 -14.44360 -14.27328 -13.98774 -13.58189 -13.43713 -13.25726 -13.08452 -12.97945 -12.65666 -12.61344 -12.53179 -12.20806 -12.05274 -11.95063 -11.88150 -11.62334 -11.58941 -11.40986 -11.04585 -10.97116 -10.63292 -10.37377 -9.99450 -9.12853 -8.28556 -6.32641 1.30400 1.36253 1.47739 1.74949 2.15992 2.34270 3.06104 3.06250 3.74910 3.89540 3.96855 4.09800 4.13961 4.15196 4.22538 4.25635 4.32494 4.42188 4.52414 4.56331 4.66580 4.70190 4.75455 4.77598 4.78187 4.83605 4.89032 4.93086 4.99469 5.03277 5.14674 5.18683 5.20532 5.22627 5.27860 5.31707 5.44526 5.50012 5.67009 5.68441 5.78616 6.17723 6.19810 6.34223 6.70912 6.74056 7.32215 7.42486 8.89143 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.003759 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.941342 B = 7446.230965 C = 7594.843931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.138 3.862 4 H 0.056 0.944 5 C -0.158 4.158 6 N -0.711 5.711 7 C 0.520 3.480 8 O -0.567 6.567 9 C 0.063 3.937 10 H 0.129 0.871 11 C -0.174 4.174 12 N -0.533 5.533 13 C 0.064 3.936 14 C -0.114 4.114 15 C 0.015 3.985 16 C -0.521 4.521 17 H 0.023 0.977 18 C 0.005 3.995 19 N -0.955 5.955 20 Si 0.958 3.042 21 H -0.262 1.262 22 H -0.299 1.299 23 H -0.242 1.242 24 C -0.091 4.091 25 C 0.069 3.931 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.414 0.586 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.023 0.977 43 H 0.265 0.735 44 H 0.037 0.963 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.771 -29.917 -3.034 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.075 0.925 5 C -0.216 4.216 6 N -0.365 5.365 7 C 0.306 3.694 8 O -0.445 6.445 9 C -0.049 4.049 10 H 0.146 0.854 11 C -0.233 4.233 12 N -0.258 5.258 13 C -0.063 4.063 14 C -0.152 4.152 15 C -0.003 4.003 16 C -0.559 4.559 17 H 0.042 0.958 18 C -0.191 4.191 19 N -0.596 5.596 20 Si 0.783 3.217 21 H -0.187 1.187 22 H -0.227 1.227 23 H -0.166 1.166 24 C -0.129 4.129 25 C -0.059 4.059 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.515 -29.316 -1.937 30.094 hybrid contribution -0.011 0.800 -1.063 1.331 sum 6.504 -28.516 -3.000 29.402 Atomic orbital electron populations 1.21787 0.95706 1.02157 1.01547 1.21777 0.96067 0.93486 1.04423 1.21014 0.95006 0.94073 0.86527 0.92549 1.22126 0.95095 1.01187 1.03239 1.45935 1.70383 1.05902 1.14254 1.20802 0.75877 0.82716 0.90000 1.90672 1.50795 1.64943 1.38106 1.21758 1.00054 0.90447 0.92650 0.85352 1.22332 0.97331 1.04489 0.99119 1.61665 1.24129 1.01028 1.38934 1.22131 0.97714 0.95444 0.91053 1.21858 0.98860 0.94817 0.99642 1.19126 0.93758 0.92495 0.94970 1.21417 1.32425 1.02345 0.99692 0.95841 1.26013 0.95076 0.94719 1.03300 1.70080 1.37924 1.13411 1.38182 0.85708 0.80125 0.77297 0.78520 1.18742 1.22671 1.16592 1.21361 0.98554 0.94765 0.98188 1.22093 0.91485 0.92699 0.99610 0.94186 0.92741 0.91274 0.89361 0.89488 0.90595 0.94959 0.90812 0.74934 0.90848 0.93064 0.88698 0.93948 0.88811 0.93272 0.93754 0.95925 0.92603 0.94454 0.93350 0.90402 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.80 71.98 0.71 -1.01 16 2 C -0.12 -1.11 5.47 30.60 0.17 -0.94 16 3 C 0.14 2.20 2.57 44.99 0.12 2.32 16 4 H 0.06 1.29 7.58 -2.39 -0.02 1.27 16 5 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 6 N -0.71 -11.36 4.53 -442.53 -2.00 -13.37 16 7 C 0.52 13.01 6.93 87.66 0.61 13.62 16 8 O -0.57 -20.25 13.97 -3.04 -0.04 -20.29 16 9 C 0.06 1.41 2.70 44.17 0.12 1.53 16 10 H 0.13 2.13 7.86 -2.39 -0.02 2.11 16 11 C -0.17 -3.12 8.30 71.98 0.60 -2.53 16 12 N -0.53 -17.35 4.35 -875.50 -3.81 -21.16 16 13 C 0.06 2.06 5.22 86.33 0.45 2.51 16 14 C -0.11 -4.91 4.84 30.65 0.15 -4.77 16 15 C 0.02 0.75 1.75 -11.46 -0.02 0.73 16 16 C -0.52 -31.60 9.14 25.60 0.23 -31.37 16 17 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 18 C 0.00 0.30 5.45 84.65 0.46 0.76 16 19 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16 20 Si 0.96 45.76 24.37 68.60 1.67 47.43 16 21 H -0.26 -11.73 6.89 99.48 0.69 -11.05 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.24 -10.52 6.53 99.48 0.65 -9.87 16 24 C -0.09 -4.09 5.32 30.65 0.16 -3.93 16 25 C 0.07 2.49 4.17 86.32 0.36 2.85 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.63 7.75 -2.38 -0.02 0.61 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.41 3.66 8.60 -92.71 -0.80 2.86 16 35 H 0.07 1.30 7.09 -2.39 -0.02 1.28 16 36 H 0.05 1.12 6.44 -2.39 -0.02 1.11 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 1.26 7.13 -2.39 -0.02 1.25 16 39 H 0.09 2.46 7.95 -2.38 -0.02 2.44 16 40 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.04 1.93 3.38 -2.39 -0.01 1.92 16 42 H 0.02 1.10 7.19 -2.38 -0.02 1.09 16 43 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.08 2.95 5.90 -2.39 -0.01 2.94 16 47 H 0.04 1.28 6.59 -2.39 -0.02 1.26 16 Total: -1.00 -77.72 352.18 0.97 -76.75 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.06 Total: 14.50 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.79 Total: -21.92 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -5.51 Total: -96.47 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.04 Total: -20.29 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -77.72 0.97 -76.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.088 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds