Wall clock time and date at job start Tue Mar 31 2020 06:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 7 7 C 1.34773 * 120.00306 * 205.00035 * 6 3 2 8 8 O 1.21292 * 119.99815 * 0.02562 * 7 6 3 9 9 C 1.50694 * 120.00409 * 179.97438 * 7 6 3 10 10 H 1.08997 * 109.47334 * 300.00478 * 9 7 6 11 11 C 1.53011 * 109.47020 * 60.00369 * 9 7 6 12 12 N 1.46900 * 109.47699 * 180.02562 * 9 7 6 13 13 C 1.46847 * 111.00058 * 299.21412 * 12 9 7 14 14 C 1.53036 * 109.52758 * 174.15644 * 13 12 9 15 15 C 1.53118 * 109.27514 * 59.17806 * 14 13 12 16 16 C 1.50710 * 109.52109 * 182.44298 * 15 14 13 17 17 H 1.07992 * 119.99944 * 119.68261 * 16 15 14 18 18 C 1.37872 * 119.99555 * 299.68277 * 16 15 14 19 19 N 1.31516 * 120.00593 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99770 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46834 * 59.99760 * 20 18 16 22 22 H 1.48494 * 109.47326 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47035 * 300.00094 * 20 18 16 24 24 C 1.53115 * 109.16071 * 302.34440 * 15 14 13 25 25 C 1.46842 * 111.00738 * 175.00314 * 12 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09007 * 109.46964 * 60.00529 * 5 3 2 32 32 H 1.09004 * 109.47224 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47346 * 300.00002 * 5 3 2 34 34 H 0.97003 * 120.00235 * 25.00789 * 6 3 2 35 35 H 1.09003 * 109.46952 * 180.02562 * 11 9 7 36 36 H 1.08996 * 109.46450 * 300.00133 * 11 9 7 37 37 H 1.08997 * 109.46978 * 59.99891 * 11 9 7 38 38 H 1.09000 * 109.46294 * 294.17297 * 13 12 9 39 39 H 1.08998 * 109.46286 * 54.13767 * 13 12 9 40 40 H 1.09004 * 109.50215 * 299.23775 * 14 13 12 41 41 H 1.09003 * 109.50555 * 179.11673 * 14 13 12 42 42 H 1.08996 * 109.52481 * 62.25270 * 15 14 13 43 43 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.50434 * 297.71439 * 24 15 14 45 45 H 1.09008 * 109.50479 * 177.59782 * 24 15 14 46 46 H 1.09010 * 109.46033 * 305.85765 * 25 12 9 47 47 H 1.09002 * 109.46185 * 65.81843 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4383 1.2997 8 8 1.7320 4.1028 0.3061 9 6 1.1265 4.1120 2.5871 10 1 0.1502 3.7438 2.9024 11 6 2.1628 3.8000 3.6687 12 7 1.0575 5.5645 2.3790 13 6 2.3624 6.1001 1.9703 14 6 2.2202 7.5837 1.6226 15 6 1.6968 8.3416 2.8457 16 6 1.4978 9.7929 2.4916 17 1 0.5167 10.2378 2.5684 18 6 2.5682 10.5525 2.0696 19 7 3.7630 10.0109 1.9766 20 14 2.3217 12.3517 1.6313 21 1 1.8071 13.0838 2.8165 22 1 3.6182 12.9408 1.2106 23 1 1.3437 12.4607 0.5192 24 6 0.3606 7.7331 3.2801 25 6 0.5568 6.2453 3.5799 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8532 0.9569 -1.0571 32 1 3.9282 2.4719 -0.1252 33 1 3.9995 0.9052 0.7161 34 1 1.4872 1.5660 2.0463 35 1 1.8738 4.2869 4.6001 36 1 2.2135 2.7222 3.8231 37 1 3.1391 4.1682 3.3535 38 1 3.0742 5.9854 2.7878 39 1 2.7213 5.5552 1.0972 40 1 1.5189 7.6981 0.7960 41 1 3.1920 7.9847 1.3344 42 1 2.4163 8.2599 3.6603 43 1 4.5161 10.5455 1.6800 44 1 -0.3699 7.8499 2.4796 45 1 0.0037 8.2409 4.1762 46 1 -0.3959 5.8057 3.8758 47 1 1.2770 6.1297 4.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397244449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:56 Heat of formation + Delta-G solvation = -49.145788 kcal Electronic energy + Delta-G solvation = -23576.990713 eV Core-core repulsion = 20373.025477 eV Total energy + Delta-G solvation = -3203.965236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18801 -38.08001 -36.30241 -34.32263 -32.61185 -31.65708 -30.04164 -29.63258 -28.82947 -25.71096 -24.50578 -23.67859 -22.05462 -21.72693 -20.75656 -19.96628 -18.26386 -16.74842 -16.52065 -16.19646 -15.22929 -15.06539 -14.47931 -14.16159 -14.07292 -13.92651 -13.79511 -13.57504 -13.42017 -12.80999 -12.60406 -12.44653 -12.15674 -11.98503 -11.96911 -11.67746 -11.54523 -11.45322 -11.32463 -11.10953 -10.89365 -10.83460 -10.64882 -10.45907 -10.03684 -9.83668 -9.51300 -9.19937 -9.02332 -8.85850 -8.47718 -8.17423 -7.61662 -5.87340 -3.92461 2.86210 3.14927 3.39305 3.43449 3.46505 4.45106 4.50063 4.53888 4.76433 4.82410 4.88184 5.16038 5.20202 5.24448 5.35779 5.40377 5.42750 5.55726 5.59012 5.67062 5.67910 5.69813 5.84209 5.92189 5.96933 5.98526 6.08298 6.12647 6.27360 6.38020 6.44150 6.57378 6.75343 6.88724 6.98477 7.17231 7.29221 7.48084 7.62325 7.73196 7.82555 7.94560 8.18193 8.29418 8.46091 8.59626 9.10895 9.71184 11.18731 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029384 B = 0.003716 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.670303 B = 7533.306120 C = 7911.793644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.732 5.732 7 C 0.519 3.481 8 O -0.509 6.509 9 C 0.063 3.937 10 H 0.099 0.901 11 C -0.183 4.183 12 N -0.512 5.512 13 C 0.046 3.954 14 C -0.100 4.100 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.105 4.105 25 C 0.060 3.940 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 -21.721 0.690 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.223 4.223 6 N -0.386 5.386 7 C 0.305 3.695 8 O -0.382 6.382 9 C -0.050 4.050 10 H 0.116 0.884 11 C -0.242 4.242 12 N -0.236 5.236 13 C -0.081 4.081 14 C -0.138 4.138 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.143 4.143 25 C -0.068 4.068 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.499 -21.057 -0.494 21.351 hybrid contribution 0.448 0.504 0.860 1.093 sum -3.052 -20.552 0.366 20.781 Atomic orbital electron populations 1.21773 0.95326 1.01469 1.02462 1.21822 0.96554 0.95612 1.02790 1.20942 0.94780 0.92740 0.87908 0.89433 1.22186 0.95569 1.02879 1.01616 1.46116 1.72165 1.07086 1.13220 1.20622 0.76582 0.81689 0.90630 1.90686 1.47873 1.63298 1.36391 1.21632 0.99554 0.92059 0.91724 0.88353 1.22416 1.00651 1.01459 0.99670 1.62015 1.29163 0.99010 1.33418 1.22560 0.87148 0.99315 0.99029 1.21596 1.03286 0.89460 0.99438 1.18694 0.90735 0.93781 0.93861 1.21179 0.94492 0.94928 1.44229 0.92884 1.24964 0.95296 0.98095 0.95658 1.69879 0.99514 1.35878 1.47815 0.86708 0.77180 0.85567 0.78806 1.20457 1.21426 1.20320 1.21669 1.01205 0.91432 1.00029 1.22169 0.97749 0.96778 0.90090 0.92509 0.92474 0.92741 0.91585 0.90594 0.91891 0.91807 0.92695 0.77110 0.91218 0.92397 0.91510 0.96519 0.89993 0.93874 0.89216 0.96320 0.93141 0.92469 0.93215 0.92585 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.80 37.16 0.36 -0.72 16 2 C -0.13 -0.89 5.47 -26.74 -0.15 -1.04 16 3 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 4 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 5 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 6 N -0.73 -7.61 4.42 -53.81 -0.24 -7.85 16 7 C 0.52 7.67 6.80 -10.99 -0.07 7.59 16 8 O -0.51 -9.87 13.57 5.55 0.08 -9.80 16 9 C 0.06 0.90 2.77 -68.86 -0.19 0.71 16 10 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 11 C -0.18 -2.23 8.40 37.16 0.31 -1.92 16 12 N -0.51 -9.61 4.43 -228.08 -1.01 -10.62 16 13 C 0.05 0.99 4.48 -3.83 -0.02 0.98 16 14 C -0.10 -2.54 5.12 -26.65 -0.14 -2.68 16 15 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 16 C -0.51 -14.53 8.56 -34.44 -0.29 -14.83 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 19 N -0.89 -26.31 11.37 55.43 0.63 -25.68 16 20 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C -0.11 -2.29 5.32 -26.65 -0.14 -2.44 16 25 C 0.06 1.08 5.02 -3.84 -0.02 1.07 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.40 3.01 8.02 -40.82 -0.33 2.68 16 35 H 0.07 0.85 6.65 -51.93 -0.35 0.51 16 36 H 0.06 0.52 7.56 -51.93 -0.39 0.13 16 37 H 0.07 0.95 6.53 -51.93 -0.34 0.61 16 38 H 0.02 0.36 6.62 -51.93 -0.34 0.01 16 39 H 0.08 1.83 5.32 -51.93 -0.28 1.55 16 40 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 2.53 6.17 -51.93 -0.32 2.21 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 46 H 0.06 0.87 8.08 -51.92 -0.42 0.45 16 47 H 0.03 0.48 6.73 -51.93 -0.35 0.13 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -31.97 356.64 -9.17 -41.14 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.52 Total: 1.09 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.46 Total: -10.63 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.62 Total: -44.15 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.97 -9.17 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.006 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds