Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 7 7 C 1.34773 * 120.00306 * 205.00035 * 6 3 2 8 8 O 1.21292 * 119.99815 * 0.02562 * 7 6 3 9 9 C 1.50694 * 120.00409 * 179.97438 * 7 6 3 10 10 H 1.08997 * 109.47334 * 300.00478 * 9 7 6 11 11 C 1.53011 * 109.47020 * 60.00369 * 9 7 6 12 12 N 1.46900 * 109.47699 * 180.02562 * 9 7 6 13 13 C 1.46847 * 111.00058 * 299.21412 * 12 9 7 14 14 C 1.53036 * 109.52758 * 174.15644 * 13 12 9 15 15 C 1.53118 * 109.27514 * 59.17806 * 14 13 12 16 16 C 1.50710 * 109.52109 * 182.44298 * 15 14 13 17 17 H 1.07992 * 119.99944 * 119.68261 * 16 15 14 18 18 C 1.37872 * 119.99555 * 299.68277 * 16 15 14 19 19 N 1.31516 * 120.00593 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99770 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46834 * 59.99760 * 20 18 16 22 22 H 1.48494 * 109.47326 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47035 * 300.00094 * 20 18 16 24 24 C 1.53115 * 109.16071 * 302.34440 * 15 14 13 25 25 C 1.46842 * 111.00738 * 175.00314 * 12 9 7 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09007 * 109.46964 * 60.00529 * 5 3 2 32 32 H 1.09004 * 109.47224 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47346 * 300.00002 * 5 3 2 34 34 H 0.97003 * 120.00235 * 25.00789 * 6 3 2 35 35 H 1.09003 * 109.46952 * 180.02562 * 11 9 7 36 36 H 1.08996 * 109.46450 * 300.00133 * 11 9 7 37 37 H 1.08997 * 109.46978 * 59.99891 * 11 9 7 38 38 H 1.09000 * 109.46294 * 294.17297 * 13 12 9 39 39 H 1.08998 * 109.46286 * 54.13767 * 13 12 9 40 40 H 1.09004 * 109.50215 * 299.23775 * 14 13 12 41 41 H 1.09003 * 109.50555 * 179.11673 * 14 13 12 42 42 H 1.08996 * 109.52481 * 62.25270 * 15 14 13 43 43 H 0.96998 * 119.99891 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.50434 * 297.71439 * 24 15 14 45 45 H 1.09008 * 109.50479 * 177.59782 * 24 15 14 46 46 H 1.09010 * 109.46033 * 305.85765 * 25 12 9 47 47 H 1.09002 * 109.46185 * 65.81843 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4383 1.2997 8 8 1.7320 4.1028 0.3061 9 6 1.1265 4.1120 2.5871 10 1 0.1502 3.7438 2.9024 11 6 2.1628 3.8000 3.6687 12 7 1.0575 5.5645 2.3790 13 6 2.3624 6.1001 1.9703 14 6 2.2202 7.5837 1.6226 15 6 1.6968 8.3416 2.8457 16 6 1.4978 9.7929 2.4916 17 1 0.5167 10.2378 2.5684 18 6 2.5682 10.5525 2.0696 19 7 3.7630 10.0109 1.9766 20 14 2.3217 12.3517 1.6313 21 1 1.8071 13.0838 2.8165 22 1 3.6182 12.9408 1.2106 23 1 1.3437 12.4607 0.5192 24 6 0.3606 7.7331 3.2801 25 6 0.5568 6.2453 3.5799 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8532 0.9569 -1.0571 32 1 3.9282 2.4719 -0.1252 33 1 3.9995 0.9052 0.7161 34 1 1.4872 1.5660 2.0463 35 1 1.8738 4.2869 4.6001 36 1 2.2135 2.7222 3.8231 37 1 3.1391 4.1682 3.3535 38 1 3.0742 5.9854 2.7878 39 1 2.7213 5.5552 1.0972 40 1 1.5189 7.6981 0.7960 41 1 3.1920 7.9847 1.3344 42 1 2.4163 8.2599 3.6603 43 1 4.5161 10.5455 1.6800 44 1 -0.3699 7.8499 2.4796 45 1 0.0037 8.2409 4.1762 46 1 -0.3959 5.8057 3.8758 47 1 1.2770 6.1297 4.3898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397244449.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = -70.714220 kcal Electronic energy + Delta-G solvation = -23577.925991 eV Core-core repulsion = 20373.025477 eV Total energy + Delta-G solvation = -3204.900514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39795 -39.49056 -37.35206 -36.04111 -34.04238 -33.05592 -31.42320 -30.98520 -30.11933 -27.47017 -25.75457 -24.59599 -23.82147 -23.21540 -21.69380 -21.19637 -20.03638 -18.43467 -17.87945 -17.49905 -16.70679 -16.28434 -16.17944 -15.46312 -15.34521 -14.91635 -14.81983 -14.74128 -14.53832 -14.29668 -14.28568 -13.83212 -13.42354 -13.33714 -13.03115 -12.95694 -12.76108 -12.66461 -12.63637 -12.48016 -12.33656 -12.19772 -11.96437 -11.91140 -11.67260 -11.59639 -11.34059 -10.89503 -10.78992 -10.43013 -10.25377 -9.98052 -9.08070 -8.07088 -6.20893 1.39542 1.42298 1.49459 1.72764 2.16749 2.43732 3.10626 3.19469 3.74320 3.89434 4.04477 4.12576 4.13542 4.22232 4.30929 4.34978 4.45429 4.51598 4.60168 4.66003 4.67797 4.72964 4.77699 4.87462 4.90352 4.94583 5.02557 5.03516 5.12056 5.15265 5.22111 5.23895 5.26429 5.30156 5.35338 5.44929 5.59108 5.62598 5.68775 5.99982 6.02746 6.25660 6.34937 6.41731 6.70232 6.91246 7.41189 7.46523 8.97302 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029384 B = 0.003716 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.670303 B = 7533.306120 C = 7911.793644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.138 3.862 4 H 0.058 0.942 5 C -0.160 4.160 6 N -0.709 5.709 7 C 0.516 3.484 8 O -0.566 6.566 9 C 0.062 3.938 10 H 0.134 0.866 11 C -0.175 4.175 12 N -0.529 5.529 13 C 0.067 3.933 14 C -0.090 4.090 15 C 0.046 3.954 16 C -0.535 4.535 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.919 5.919 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.101 4.101 25 C 0.066 3.934 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.014 0.986 39 H 0.071 0.929 40 H 0.017 0.983 41 H 0.053 0.947 42 H -0.009 1.009 43 H 0.259 0.741 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -24.156 2.109 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.218 4.218 6 N -0.363 5.363 7 C 0.302 3.698 8 O -0.444 6.444 9 C -0.050 4.050 10 H 0.151 0.849 11 C -0.234 4.234 12 N -0.253 5.253 13 C -0.060 4.060 14 C -0.129 4.129 15 C 0.028 3.972 16 C -0.573 4.573 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.138 4.138 25 C -0.061 4.061 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.009 0.991 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.733 -23.553 0.963 24.043 hybrid contribution 0.825 1.195 0.394 1.504 sum -3.908 -22.358 1.356 22.738 Atomic orbital electron populations 1.21784 0.95434 1.02257 1.01633 1.21771 0.96305 0.93181 1.04438 1.21027 0.94772 0.94294 0.86534 0.92408 1.22147 0.95451 1.00945 1.03287 1.45929 1.70308 1.05791 1.14309 1.20829 0.76025 0.82815 0.90099 1.90674 1.50684 1.64789 1.38218 1.21807 1.02117 0.88894 0.92171 0.84893 1.22359 0.98287 1.04148 0.98620 1.61832 1.27157 1.01987 1.34338 1.22127 0.88992 0.96290 0.98615 1.21356 1.00397 0.92581 0.98520 1.18646 0.92465 0.93293 0.92811 1.21596 0.94557 0.96587 1.44570 0.93014 1.25796 0.95021 1.02580 0.95526 1.70034 1.00192 1.37363 1.48273 0.85667 0.77233 0.80282 0.78800 1.19280 1.20937 1.19932 1.21547 0.98117 0.94314 0.99868 1.22116 0.99851 0.94277 0.89835 0.94069 0.92638 0.91130 0.89410 0.89427 0.90392 0.95467 0.90876 0.74898 0.90674 0.88348 0.94099 0.96765 0.91041 0.96445 0.92800 0.99108 0.93189 0.93618 0.92201 0.88593 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.80 71.98 0.71 -1.08 16 2 C -0.12 -1.27 5.47 30.59 0.17 -1.11 16 3 C 0.14 2.54 2.57 44.99 0.12 2.65 16 4 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 5 C -0.16 -2.97 9.48 71.98 0.68 -2.29 16 6 N -0.71 -13.29 4.42 -442.55 -1.96 -15.24 16 7 C 0.52 14.79 6.80 87.66 0.60 15.39 16 8 O -0.57 -22.68 13.57 -3.07 -0.04 -22.72 16 9 C 0.06 1.62 2.77 44.17 0.12 1.74 16 10 H 0.13 2.62 8.08 -2.39 -0.02 2.61 16 11 C -0.18 -3.76 8.40 71.99 0.60 -3.16 16 12 N -0.53 -19.48 4.43 -875.51 -3.88 -23.36 16 13 C 0.07 3.00 4.48 86.33 0.39 3.39 16 14 C -0.09 -4.86 5.12 30.65 0.16 -4.70 16 15 C 0.05 2.49 2.16 -11.46 -0.02 2.47 16 16 C -0.54 -31.41 8.56 25.60 0.22 -31.19 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.52 5.31 84.65 0.45 0.97 16 19 N -0.92 -56.28 11.37 21.45 0.24 -56.04 16 20 Si 0.95 45.97 29.54 68.60 2.03 47.99 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 C -0.10 -4.37 5.32 30.64 0.16 -4.20 16 25 C 0.07 2.28 5.02 86.33 0.43 2.72 16 26 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.66 7.75 -2.39 -0.02 0.64 16 28 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.41 4.67 8.02 -92.71 -0.74 3.92 16 35 H 0.07 1.57 6.65 -2.39 -0.02 1.56 16 36 H 0.10 1.30 7.56 -2.39 -0.02 1.28 16 37 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 38 H 0.01 0.63 6.62 -2.39 -0.02 0.62 16 39 H 0.07 3.37 5.32 -2.39 -0.01 3.36 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.05 3.25 6.17 -2.39 -0.01 3.24 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 46 H 0.10 2.60 8.08 -2.38 -0.02 2.58 16 47 H 0.03 1.13 6.73 -2.39 -0.02 1.12 16 Total: -1.00 -74.65 356.64 1.35 -73.29 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.19 Total: 14.48 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 4.78 Total: -18.40 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -5.60 Total: -94.64 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.04 Total: -22.72 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -74.65 1.35 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244449.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.579 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds