Wall clock time and date at job start Tue Mar 31 2020 06:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47400 * 2 1 4 4 H 1.09002 * 109.47117 * 304.99842 * 3 2 1 5 5 C 1.52994 * 109.47157 * 185.00112 * 3 2 1 6 6 N 1.46502 * 109.47112 * 64.99856 * 3 2 1 7 7 C 1.34777 * 119.99802 * 205.00052 * 6 3 2 8 8 O 1.21287 * 120.00350 * 359.97438 * 7 6 3 9 9 C 1.50702 * 119.99857 * 179.97438 * 7 6 3 10 10 H 1.08999 * 109.47168 * 45.27566 * 9 7 6 11 11 C 1.52995 * 109.47191 * 285.27266 * 9 7 6 12 12 N 1.46903 * 109.47161 * 165.27231 * 9 7 6 13 13 C 1.46846 * 110.99872 * 196.44304 * 12 9 7 14 14 C 1.53039 * 109.51999 * 174.15910 * 13 12 9 15 15 C 1.53123 * 109.27580 * 59.18129 * 14 13 12 16 16 C 1.50704 * 109.52185 * 182.43917 * 15 14 13 17 17 H 1.08001 * 120.00224 * 119.67632 * 16 15 14 18 18 C 1.37881 * 119.99829 * 299.68151 * 16 15 14 19 19 N 1.31519 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47368 * 89.99737 * 20 18 16 22 22 H 1.48502 * 109.47131 * 210.00103 * 20 18 16 23 23 H 1.48501 * 109.46925 * 329.99479 * 20 18 16 24 24 C 1.53119 * 109.15975 * 302.34048 * 15 14 13 25 25 C 1.46850 * 110.99789 * 72.23006 * 12 9 7 26 26 H 1.09003 * 109.46741 * 59.99905 * 1 2 3 27 27 H 1.08996 * 109.47274 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47035 * 300.00341 * 1 2 3 29 29 H 1.09002 * 109.47035 * 239.99659 * 2 1 3 30 30 H 1.09003 * 109.46741 * 120.00095 * 2 1 3 31 31 H 1.09002 * 109.47412 * 299.99846 * 5 3 2 32 32 H 1.08999 * 109.47389 * 59.99859 * 5 3 2 33 33 H 1.09008 * 109.47515 * 180.02562 * 5 3 2 34 34 H 0.96998 * 120.00308 * 24.99987 * 6 3 2 35 35 H 1.08999 * 109.47310 * 300.00214 * 11 9 7 36 36 H 1.08997 * 109.47310 * 59.99888 * 11 9 7 37 37 H 1.08999 * 109.47261 * 179.97438 * 11 9 7 38 38 H 1.09002 * 109.46246 * 294.17466 * 13 12 9 39 39 H 1.08998 * 109.46505 * 54.14370 * 13 12 9 40 40 H 1.08997 * 109.50596 * 299.24115 * 14 13 12 41 41 H 1.09004 * 109.49981 * 179.11544 * 14 13 12 42 42 H 1.08993 * 109.52792 * 62.25301 * 15 14 13 43 43 H 0.96995 * 119.99889 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.50409 * 297.71353 * 24 15 14 45 45 H 1.09003 * 109.49981 * 177.60001 * 24 15 14 46 46 H 1.08998 * 109.46538 * 305.85128 * 25 12 9 47 47 H 1.08995 * 109.45824 * 65.82699 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5258 3.4384 1.2995 8 8 1.7330 4.1029 0.3063 9 6 1.1265 4.1122 2.5871 10 1 1.7015 3.6903 3.4114 11 6 -0.3658 3.8877 2.8387 12 7 1.3954 5.5531 2.4896 13 6 1.3943 6.1796 3.8176 14 6 1.8195 7.6444 3.6924 15 6 0.8475 8.3751 2.7618 16 6 1.2953 9.8034 2.5869 17 1 1.5439 10.1749 1.6037 18 6 1.3878 10.6360 3.6821 19 7 1.0846 10.1838 4.8794 20 14 1.9422 12.4066 3.4653 21 1 0.7587 13.2695 3.2208 22 1 2.6405 12.8607 4.6946 23 1 2.8684 12.4970 2.3080 24 6 0.8313 7.6737 1.4009 25 6 0.4347 6.2081 1.5925 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9995 0.9052 0.7161 32 1 3.8532 0.9569 -1.0571 33 1 3.9284 2.4719 -0.1253 34 1 1.4871 1.5661 2.0463 35 1 -0.9408 4.3095 2.0144 36 1 -0.5653 2.8186 2.9111 37 1 -0.6545 4.3746 3.7702 38 1 0.3920 6.1275 4.2430 39 1 2.0925 5.6531 4.4682 40 1 2.8270 7.6969 3.2799 41 1 1.8034 8.1134 4.6762 42 1 -0.1533 8.3566 3.1932 43 1 1.1493 10.7696 5.6497 44 1 1.8234 7.7266 0.9523 45 1 0.1093 8.1636 0.7475 46 1 0.4362 5.7023 0.6270 47 1 -0.5629 6.1558 2.0283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397244450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:59 Heat of formation + Delta-G solvation = -52.707882 kcal Electronic energy + Delta-G solvation = -23469.221974 eV Core-core repulsion = 20265.102273 eV Total energy + Delta-G solvation = -3204.119700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13867 -38.12293 -36.32213 -34.31128 -32.57976 -31.67269 -30.09710 -29.76791 -28.75239 -25.74843 -24.55139 -23.66907 -22.14178 -21.65730 -20.74992 -19.96278 -18.27232 -16.82101 -16.50829 -16.25381 -15.19640 -14.93943 -14.52290 -14.33726 -14.06053 -13.96871 -13.73307 -13.58933 -13.41360 -12.79894 -12.54391 -12.34941 -12.25785 -12.04818 -11.92547 -11.77861 -11.60003 -11.43601 -11.24720 -11.17444 -10.92359 -10.86488 -10.69400 -10.40501 -10.02699 -9.91248 -9.52341 -9.33401 -9.07234 -8.70730 -8.62466 -8.21536 -7.63033 -5.90577 -3.94858 2.85548 3.13954 3.36134 3.42444 3.47185 4.44227 4.49674 4.52789 4.75613 4.79541 4.88220 5.13951 5.19377 5.22630 5.33451 5.38731 5.39677 5.53892 5.60978 5.64433 5.65716 5.71593 5.89876 5.90591 5.95765 6.01338 6.08333 6.11578 6.25701 6.31789 6.49743 6.58065 6.65791 6.78985 7.03704 7.19097 7.26740 7.44904 7.57662 7.72106 7.77747 7.91228 8.14823 8.23213 8.44303 8.57735 9.08888 9.68987 11.15690 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037444 B = 0.003448 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.604809 B = 8119.867853 C = 8333.826474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.142 3.858 4 H 0.086 0.914 5 C -0.164 4.164 6 N -0.732 5.732 7 C 0.523 3.477 8 O -0.516 6.516 9 C 0.062 3.938 10 H 0.096 0.904 11 C -0.179 4.179 12 N -0.513 5.513 13 C 0.058 3.942 14 C -0.103 4.103 15 C 0.048 3.952 16 C -0.507 4.507 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.104 4.104 25 C 0.056 3.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.019 0.981 43 H 0.258 0.742 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -21.910 -4.638 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.104 0.896 5 C -0.222 4.222 6 N -0.386 5.386 7 C 0.308 3.692 8 O -0.389 6.389 9 C -0.050 4.050 10 H 0.114 0.886 11 C -0.238 4.238 12 N -0.237 5.237 13 C -0.069 4.069 14 C -0.141 4.141 15 C 0.029 3.971 16 C -0.545 4.545 17 H 0.072 0.928 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.200 1.200 24 C -0.142 4.142 25 C -0.071 4.071 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.098 -21.261 -5.399 21.936 hybrid contribution -0.534 0.534 0.798 1.099 sum -0.632 -20.727 -4.601 21.241 Atomic orbital electron populations 1.21774 0.95366 1.01499 1.02388 1.21829 0.96516 0.95648 1.02826 1.20928 0.94819 0.92686 0.87869 0.89580 1.22182 0.95544 1.02936 1.01579 1.46122 1.72126 1.07116 1.13261 1.20691 0.76256 0.81563 0.90644 1.90668 1.48205 1.63506 1.36556 1.21615 0.95906 0.92442 0.95082 0.88624 1.22368 0.96329 1.01776 1.03301 1.61918 1.51042 0.98500 1.12272 1.22332 0.98588 0.98334 0.87690 1.21655 0.99194 0.89498 1.03775 1.18692 0.95086 0.93389 0.89920 1.21247 1.44264 0.95541 0.93457 0.92776 1.24968 0.95486 0.98265 0.95363 1.69876 1.49566 1.35499 0.98409 0.86640 0.78746 0.85394 0.77489 1.20865 1.21353 1.19955 1.21646 1.00405 0.91969 1.00179 1.22298 0.91830 0.96781 0.96228 0.92575 0.92717 0.92490 0.90603 0.91528 0.92659 0.91966 0.91722 0.77088 0.91454 0.92363 0.91194 0.95714 0.92778 0.93801 0.88923 0.96252 0.93214 0.92507 0.93426 0.90501 0.96023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.80 37.16 0.36 -0.67 16 2 C -0.13 -0.86 5.47 -26.73 -0.15 -1.00 16 3 C 0.14 1.34 2.57 -67.93 -0.17 1.16 16 4 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 5 C -0.16 -1.55 9.48 37.15 0.35 -1.20 16 6 N -0.73 -7.44 4.53 -53.81 -0.24 -7.68 16 7 C 0.52 7.53 6.93 -10.98 -0.08 7.45 16 8 O -0.52 -9.60 13.97 5.55 0.08 -9.53 16 9 C 0.06 0.89 2.70 -68.86 -0.19 0.71 16 10 H 0.10 1.19 7.86 -51.93 -0.41 0.78 16 11 C -0.18 -2.20 8.30 37.15 0.31 -1.89 16 12 N -0.51 -9.60 4.35 -228.08 -0.99 -10.59 16 13 C 0.06 1.13 5.22 -3.83 -0.02 1.11 16 14 C -0.10 -2.49 5.12 -26.65 -0.14 -2.63 16 15 C 0.05 1.23 2.16 -91.64 -0.20 1.03 16 16 C -0.51 -14.39 8.56 -34.44 -0.29 -14.68 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 19 N -0.89 -25.82 11.37 55.43 0.63 -25.19 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.10 -2.38 5.32 -26.65 -0.14 -2.53 16 25 C 0.06 1.11 4.17 -3.83 -0.02 1.09 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 7.75 -51.93 -0.40 0.00 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.40 2.95 8.60 -40.82 -0.35 2.60 16 35 H 0.07 0.92 6.45 -51.93 -0.33 0.59 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.90 7.09 -51.93 -0.37 0.53 16 38 H 0.02 0.48 7.13 -51.93 -0.37 0.11 16 39 H 0.05 0.96 7.95 -51.93 -0.41 0.55 16 40 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 2.46 6.18 -51.93 -0.32 2.14 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.08 1.54 5.90 -51.93 -0.31 1.23 16 47 H 0.02 0.42 6.59 -51.93 -0.34 0.08 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -31.42 359.03 -9.22 -40.64 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.63 Total: 0.60 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.46 Total: -10.46 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.61 Total: -43.46 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.42 -9.22 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.067 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds