Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47400 * 2 1 4 4 H 1.09002 * 109.47117 * 304.99842 * 3 2 1 5 5 C 1.52994 * 109.47157 * 185.00112 * 3 2 1 6 6 N 1.46502 * 109.47112 * 64.99856 * 3 2 1 7 7 C 1.34777 * 119.99802 * 205.00052 * 6 3 2 8 8 O 1.21287 * 120.00350 * 359.97438 * 7 6 3 9 9 C 1.50702 * 119.99857 * 179.97438 * 7 6 3 10 10 H 1.08999 * 109.47168 * 45.27566 * 9 7 6 11 11 C 1.52995 * 109.47191 * 285.27266 * 9 7 6 12 12 N 1.46903 * 109.47161 * 165.27231 * 9 7 6 13 13 C 1.46846 * 110.99872 * 196.44304 * 12 9 7 14 14 C 1.53039 * 109.51999 * 174.15910 * 13 12 9 15 15 C 1.53123 * 109.27580 * 59.18129 * 14 13 12 16 16 C 1.50704 * 109.52185 * 182.43917 * 15 14 13 17 17 H 1.08001 * 120.00224 * 119.67632 * 16 15 14 18 18 C 1.37881 * 119.99829 * 299.68151 * 16 15 14 19 19 N 1.31519 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99935 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47368 * 89.99737 * 20 18 16 22 22 H 1.48502 * 109.47131 * 210.00103 * 20 18 16 23 23 H 1.48501 * 109.46925 * 329.99479 * 20 18 16 24 24 C 1.53119 * 109.15975 * 302.34048 * 15 14 13 25 25 C 1.46850 * 110.99789 * 72.23006 * 12 9 7 26 26 H 1.09003 * 109.46741 * 59.99905 * 1 2 3 27 27 H 1.08996 * 109.47274 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47035 * 300.00341 * 1 2 3 29 29 H 1.09002 * 109.47035 * 239.99659 * 2 1 3 30 30 H 1.09003 * 109.46741 * 120.00095 * 2 1 3 31 31 H 1.09002 * 109.47412 * 299.99846 * 5 3 2 32 32 H 1.08999 * 109.47389 * 59.99859 * 5 3 2 33 33 H 1.09008 * 109.47515 * 180.02562 * 5 3 2 34 34 H 0.96998 * 120.00308 * 24.99987 * 6 3 2 35 35 H 1.08999 * 109.47310 * 300.00214 * 11 9 7 36 36 H 1.08997 * 109.47310 * 59.99888 * 11 9 7 37 37 H 1.08999 * 109.47261 * 179.97438 * 11 9 7 38 38 H 1.09002 * 109.46246 * 294.17466 * 13 12 9 39 39 H 1.08998 * 109.46505 * 54.14370 * 13 12 9 40 40 H 1.08997 * 109.50596 * 299.24115 * 14 13 12 41 41 H 1.09004 * 109.49981 * 179.11544 * 14 13 12 42 42 H 1.08993 * 109.52792 * 62.25301 * 15 14 13 43 43 H 0.96995 * 119.99889 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.50409 * 297.71353 * 24 15 14 45 45 H 1.09003 * 109.49981 * 177.60001 * 24 15 14 46 46 H 1.08998 * 109.46538 * 305.85128 * 25 12 9 47 47 H 1.08995 * 109.45824 * 65.82699 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5258 3.4384 1.2995 8 8 1.7330 4.1029 0.3063 9 6 1.1265 4.1122 2.5871 10 1 1.7015 3.6903 3.4114 11 6 -0.3658 3.8877 2.8387 12 7 1.3954 5.5531 2.4896 13 6 1.3943 6.1796 3.8176 14 6 1.8195 7.6444 3.6924 15 6 0.8475 8.3751 2.7618 16 6 1.2953 9.8034 2.5869 17 1 1.5439 10.1749 1.6037 18 6 1.3878 10.6360 3.6821 19 7 1.0846 10.1838 4.8794 20 14 1.9422 12.4066 3.4653 21 1 0.7587 13.2695 3.2208 22 1 2.6405 12.8607 4.6946 23 1 2.8684 12.4970 2.3080 24 6 0.8313 7.6737 1.4009 25 6 0.4347 6.2081 1.5925 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9995 0.9052 0.7161 32 1 3.8532 0.9569 -1.0571 33 1 3.9284 2.4719 -0.1253 34 1 1.4871 1.5661 2.0463 35 1 -0.9408 4.3095 2.0144 36 1 -0.5653 2.8186 2.9111 37 1 -0.6545 4.3746 3.7702 38 1 0.3920 6.1275 4.2430 39 1 2.0925 5.6531 4.4682 40 1 2.8270 7.6969 3.2799 41 1 1.8034 8.1134 4.6762 42 1 -0.1533 8.3566 3.1932 43 1 1.1493 10.7696 5.6497 44 1 1.8234 7.7266 0.9523 45 1 0.1093 8.1636 0.7475 46 1 0.4362 5.7023 0.6270 47 1 -0.5629 6.1558 2.0283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397244450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -73.294758 kcal Electronic energy + Delta-G solvation = -23470.114688 eV Core-core repulsion = 20265.102273 eV Total energy + Delta-G solvation = -3205.012414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32121 -39.52985 -37.33660 -36.02452 -33.99118 -33.03599 -31.58327 -30.92700 -30.09198 -27.49226 -25.79131 -24.56556 -23.84638 -23.19010 -21.64165 -21.17509 -20.04881 -18.45601 -17.90069 -17.49354 -16.64771 -16.38002 -15.97203 -15.54846 -15.34113 -14.95873 -14.79294 -14.77083 -14.49848 -14.28675 -14.19959 -13.89895 -13.34828 -13.22389 -13.11824 -13.01581 -12.82869 -12.71116 -12.62952 -12.45383 -12.22559 -12.20397 -11.98951 -11.89933 -11.71464 -11.58587 -11.35929 -11.00469 -10.66286 -10.48050 -10.29945 -9.98820 -9.08691 -8.07659 -6.20333 1.40277 1.40966 1.51780 1.74535 2.17243 2.44180 3.12388 3.18903 3.75606 3.91524 4.02032 4.12472 4.13657 4.23074 4.28758 4.34848 4.44363 4.52854 4.58286 4.67378 4.67708 4.72077 4.78907 4.84447 4.89473 4.93502 4.95780 5.03603 5.13769 5.15532 5.20308 5.23218 5.25145 5.32094 5.34981 5.45131 5.55966 5.62877 5.67955 6.00679 6.03305 6.26354 6.32921 6.42913 6.70957 6.89380 7.41926 7.46569 8.96913 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037444 B = 0.003448 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.604809 B = 8119.867853 C = 8333.826474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.139 3.861 4 H 0.059 0.941 5 C -0.160 4.160 6 N -0.711 5.711 7 C 0.522 3.478 8 O -0.566 6.566 9 C 0.061 3.939 10 H 0.124 0.876 11 C -0.172 4.172 12 N -0.530 5.530 13 C 0.070 3.930 14 C -0.095 4.095 15 C 0.048 3.952 16 C -0.536 4.536 17 H 0.044 0.956 18 C 0.015 3.985 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.273 1.273 24 C -0.098 4.098 25 C 0.071 3.929 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.029 0.971 34 H 0.413 0.587 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.080 0.920 40 H 0.024 0.976 41 H 0.067 0.933 42 H -0.007 1.007 43 H 0.261 0.739 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -24.371 -3.988 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.035 3.965 4 H 0.078 0.922 5 C -0.218 4.218 6 N -0.365 5.365 7 C 0.308 3.692 8 O -0.444 6.444 9 C -0.051 4.051 10 H 0.142 0.858 11 C -0.230 4.230 12 N -0.254 5.254 13 C -0.057 4.057 14 C -0.133 4.133 15 C 0.029 3.971 16 C -0.574 4.574 17 H 0.063 0.937 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.778 3.222 21 H -0.201 1.201 22 H -0.205 1.205 23 H -0.198 1.198 24 C -0.136 4.136 25 C -0.057 4.057 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.250 0.750 35 H 0.069 0.931 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.011 0.989 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.069 -23.783 -4.728 24.248 hybrid contribution -0.536 1.243 0.576 1.471 sum -0.605 -22.539 -4.152 22.927 Atomic orbital electron populations 1.21785 0.95482 1.02218 1.01634 1.21779 0.96265 0.93343 1.04394 1.21020 0.94837 0.94163 0.86489 0.92231 1.22141 0.95392 1.01078 1.03201 1.45944 1.70337 1.05834 1.14385 1.20740 0.75831 0.82679 0.89929 1.90657 1.50763 1.64879 1.38092 1.21763 0.97876 0.89411 0.96081 0.85824 1.22304 0.94200 1.04186 1.02358 1.61747 1.51226 1.01143 1.11308 1.22094 0.99243 0.95575 0.88780 1.21417 0.97716 0.92686 1.01516 1.18633 0.93795 0.93091 0.91564 1.21571 1.45186 0.97340 0.93332 0.93748 1.25701 0.95393 1.02250 0.95045 1.69992 1.49694 1.36806 0.98905 0.85644 0.78457 0.80489 0.77586 1.20101 1.20483 1.19812 1.21523 0.99373 0.94292 0.98415 1.22049 0.92327 0.94511 0.96785 0.93950 0.91258 0.92685 0.89393 0.89562 0.91049 0.90394 0.95217 0.74993 0.93127 0.88616 0.91431 0.95411 0.90129 0.95721 0.91473 0.98890 0.92975 0.94340 0.93579 0.90531 0.95407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.80 71.98 0.71 -0.97 16 2 C -0.12 -1.20 5.47 30.59 0.17 -1.03 16 3 C 0.14 2.39 2.57 44.99 0.12 2.51 16 4 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 5 C -0.16 -2.78 9.48 71.98 0.68 -2.09 16 6 N -0.71 -12.78 4.53 -442.53 -2.00 -14.78 16 7 C 0.52 14.35 6.93 87.66 0.61 14.95 16 8 O -0.57 -21.29 13.97 -3.05 -0.04 -21.33 16 9 C 0.06 1.60 2.70 44.17 0.12 1.72 16 10 H 0.12 2.59 7.86 -2.39 -0.02 2.58 16 11 C -0.17 -3.77 8.30 71.98 0.60 -3.18 16 12 N -0.53 -19.50 4.35 -875.52 -3.81 -23.30 16 13 C 0.07 2.72 5.22 86.33 0.45 3.17 16 14 C -0.09 -4.72 5.12 30.65 0.16 -4.56 16 15 C 0.05 2.55 2.16 -11.46 -0.02 2.53 16 16 C -0.54 -31.48 8.56 25.60 0.22 -31.26 16 17 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 18 C 0.01 0.84 5.31 84.65 0.45 1.29 16 19 N -0.91 -53.71 11.37 21.45 0.24 -53.47 16 20 Si 0.95 45.32 29.54 68.60 2.03 47.34 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 24 C -0.10 -4.66 5.32 30.65 0.16 -4.50 16 25 C 0.07 2.84 4.17 86.32 0.36 3.20 16 26 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.61 7.75 -2.39 -0.02 0.60 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.41 4.56 8.60 -92.71 -0.80 3.77 16 35 H 0.05 1.30 6.45 -2.39 -0.02 1.28 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.55 7.09 -2.39 -0.02 1.53 16 38 H 0.03 1.06 7.13 -2.39 -0.02 1.04 16 39 H 0.08 2.69 7.95 -2.39 -0.02 2.67 16 40 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 3.66 6.18 -2.39 -0.01 3.65 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 44 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.08 3.12 5.90 -2.39 -0.01 3.11 16 47 H 0.03 1.08 6.59 -2.39 -0.02 1.06 16 Total: -1.00 -71.07 359.03 1.31 -69.76 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.13 Total: 13.99 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 4.77 Total: -18.22 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -5.57 Total: -91.55 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.04 Total: -21.33 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.07 1.31 -69.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.535 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds