Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 N 1.46500 * 109.47249 * 295.00397 * 3 2 1 7 7 C 1.34768 * 120.00056 * 154.99998 * 6 3 2 8 8 O 1.21278 * 120.00079 * 359.97438 * 7 6 3 9 9 C 1.50705 * 120.00177 * 179.97438 * 7 6 3 10 10 H 1.08996 * 109.47135 * 300.00342 * 9 7 6 11 11 C 1.53005 * 109.46725 * 60.00029 * 9 7 6 12 12 N 1.46892 * 109.47338 * 179.97438 * 9 7 6 13 13 C 1.46855 * 111.00279 * 299.21235 * 12 9 7 14 14 C 1.53037 * 109.52265 * 174.15784 * 13 12 9 15 15 C 1.53125 * 109.27814 * 59.18137 * 14 13 12 16 16 C 1.50693 * 109.52168 * 182.43633 * 15 14 13 17 17 H 1.08003 * 120.00260 * 119.68492 * 16 15 14 18 18 C 1.37883 * 120.00485 * 299.68271 * 16 15 14 19 19 N 1.31516 * 119.99639 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00311 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47008 * 59.99938 * 20 18 16 22 22 H 1.48494 * 109.47405 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47406 * 300.00239 * 20 18 16 24 24 C 1.53118 * 109.16159 * 302.34371 * 15 14 13 25 25 C 1.46844 * 111.00233 * 175.00176 * 12 9 7 26 26 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 28 28 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 29 29 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 30 30 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 33 33 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 34 34 H 0.97001 * 119.99547 * 334.99826 * 6 3 2 35 35 H 1.08996 * 109.47059 * 60.00266 * 11 9 7 36 36 H 1.09004 * 109.46991 * 180.02562 * 11 9 7 37 37 H 1.08997 * 109.46918 * 300.00281 * 11 9 7 38 38 H 1.08999 * 109.46141 * 294.17335 * 13 12 9 39 39 H 1.09000 * 109.46027 * 54.14301 * 13 12 9 40 40 H 1.08994 * 109.50497 * 299.24051 * 14 13 12 41 41 H 1.09003 * 109.50230 * 179.12040 * 14 13 12 42 42 H 1.09002 * 109.52195 * 62.24647 * 15 14 13 43 43 H 0.96993 * 119.99911 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.50143 * 297.71388 * 24 15 14 45 45 H 1.08995 * 109.50352 * 177.59568 * 24 15 14 46 46 H 1.08997 * 109.46054 * 305.86016 * 25 12 9 47 47 H 1.09007 * 109.46140 * 65.82474 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0976 -1.2518 7 6 1.5255 3.4384 -1.2995 8 8 1.7318 4.1028 -0.3060 9 6 1.1273 4.1124 -2.5873 10 1 1.8662 3.8902 -3.3572 11 6 -0.2427 3.5954 -3.0309 12 7 1.0581 5.5648 -2.3789 13 6 0.0568 5.9031 -1.3594 14 6 0.1141 7.4037 -1.0644 15 6 -0.1595 8.1832 -2.3537 16 6 -0.0454 9.6611 -2.0825 17 1 0.6862 10.2526 -2.6129 18 6 -0.8749 10.2584 -1.1571 19 7 -1.7655 9.5380 -0.5108 20 14 -0.7330 12.0902 -0.8204 21 1 -0.9904 12.8451 -2.0730 22 1 -1.7298 12.4833 0.2076 23 1 0.6339 12.3987 -0.3287 24 6 0.8675 7.7767 -3.4142 25 6 0.7884 6.2653 -3.6410 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9281 2.4721 0.1262 32 1 3.9994 0.9054 -0.7161 33 1 3.8532 0.9570 1.0571 34 1 1.4870 1.5662 -2.0462 35 1 -0.9816 3.8176 -2.2610 36 1 -0.5306 4.0825 -3.9626 37 1 -0.1918 2.5177 -3.1853 38 1 -0.9364 5.6426 -1.7252 39 1 0.2653 5.3453 -0.4464 40 1 1.1027 7.6626 -0.6855 41 1 -0.6398 7.6571 -0.3190 42 1 -1.1631 7.9540 -2.7119 43 1 -2.3493 9.9582 0.1398 44 1 1.8680 8.0415 -3.0722 45 1 0.6519 8.2966 -4.3476 46 1 1.5282 5.9705 -4.3852 47 1 -0.2082 6.0030 -3.9961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397244451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -49.099743 kcal Electronic energy + Delta-G solvation = -23598.041240 eV Core-core repulsion = 20394.078000 eV Total energy + Delta-G solvation = -3203.963240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19013 -38.08020 -36.30181 -34.32398 -32.60319 -31.66676 -30.04565 -29.63781 -28.80378 -25.71947 -24.52433 -23.66500 -22.05011 -21.72374 -20.75101 -19.96826 -18.26357 -16.74911 -16.50391 -16.22254 -15.37114 -14.80589 -14.49457 -14.32261 -14.04291 -13.90335 -13.75623 -13.56487 -13.49720 -12.78245 -12.57322 -12.40635 -12.18362 -11.99216 -11.95035 -11.73460 -11.55172 -11.40130 -11.36846 -11.06767 -10.89624 -10.83582 -10.64822 -10.45616 -10.03625 -9.83892 -9.50346 -9.22916 -9.01782 -8.85856 -8.46927 -8.17280 -7.61484 -5.87363 -3.92435 2.86410 3.14800 3.39320 3.43482 3.46547 4.45425 4.49929 4.53882 4.78108 4.82256 4.88120 5.15905 5.20013 5.24157 5.36158 5.40786 5.42746 5.55426 5.58977 5.67959 5.68604 5.69753 5.84132 5.93331 5.97154 5.98763 6.08497 6.11597 6.27237 6.38012 6.44130 6.57351 6.75405 6.88754 6.98503 7.17253 7.29285 7.48120 7.62351 7.73219 7.82593 7.94579 8.18220 8.29467 8.46117 8.59701 9.10907 9.71168 11.18745 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.003741 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.578687 B = 7483.021164 C = 7746.826761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.087 0.913 5 C -0.163 4.163 6 N -0.732 5.732 7 C 0.519 3.481 8 O -0.509 6.509 9 C 0.063 3.937 10 H 0.099 0.901 11 C -0.183 4.183 12 N -0.512 5.512 13 C 0.046 3.954 14 C -0.099 4.099 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.105 4.105 25 C 0.060 3.940 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.017 0.983 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.317 -20.962 -3.027 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.105 0.895 5 C -0.222 4.222 6 N -0.386 5.386 7 C 0.305 3.695 8 O -0.382 6.382 9 C -0.050 4.050 10 H 0.117 0.883 11 C -0.242 4.242 12 N -0.236 5.236 13 C -0.081 4.081 14 C -0.138 4.138 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.143 4.143 25 C -0.068 4.068 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.781 -20.259 -1.963 21.159 hybrid contribution -0.815 0.396 -0.527 1.048 sum 4.965 -19.863 -2.490 20.625 Atomic orbital electron populations 1.21776 0.95305 1.01498 1.02507 1.21823 0.96574 0.95590 1.02766 1.20945 0.94777 0.92761 0.87918 0.89458 1.22179 0.95574 1.02850 1.01577 1.46114 1.72148 1.07070 1.13253 1.20620 0.76621 0.81648 0.90623 1.90682 1.47749 1.63364 1.36446 1.21633 0.97427 0.91296 0.94613 0.88345 1.22419 0.98104 1.00838 1.02847 1.62013 1.50525 1.01983 1.09089 1.22566 0.90396 1.00623 0.94491 1.21595 1.01476 0.89270 1.01429 1.18694 0.93047 0.94567 0.90771 1.21181 1.18253 0.93362 1.22049 0.92890 1.24964 0.95318 0.97711 0.96011 1.69878 1.21468 1.35200 1.26541 0.86706 0.77744 0.85983 0.77815 1.20458 1.21420 1.20325 1.21669 1.01496 0.91291 0.99874 1.22169 0.97992 0.96686 0.89939 0.92725 0.92476 0.92482 0.91592 0.90594 0.91783 0.92708 0.91931 0.77109 0.91497 0.91219 0.92411 0.96502 0.89983 0.93880 0.89214 0.96319 0.93142 0.92474 0.93216 0.92588 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.80 37.16 0.36 -0.78 16 2 C -0.13 -0.90 5.47 -26.73 -0.15 -1.05 16 3 C 0.14 1.38 2.57 -67.93 -0.17 1.20 16 4 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 5 C -0.16 -1.55 9.48 37.16 0.35 -1.19 16 6 N -0.73 -7.62 4.42 -53.81 -0.24 -7.85 16 7 C 0.52 7.67 6.80 -10.99 -0.07 7.60 16 8 O -0.51 -9.87 13.57 5.56 0.08 -9.80 16 9 C 0.06 0.90 2.77 -68.86 -0.19 0.71 16 10 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 11 C -0.18 -2.22 8.40 37.16 0.31 -1.91 16 12 N -0.51 -9.61 4.43 -228.08 -1.01 -10.62 16 13 C 0.05 0.99 4.48 -3.83 -0.02 0.97 16 14 C -0.10 -2.54 5.12 -26.65 -0.14 -2.67 16 15 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 16 C -0.51 -14.54 8.56 -34.44 -0.29 -14.83 16 17 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.64 16 19 N -0.89 -26.30 11.37 55.43 0.63 -25.67 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C -0.11 -2.29 5.32 -26.65 -0.14 -2.44 16 25 C 0.06 1.08 5.02 -3.83 -0.02 1.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.45 7.75 -51.93 -0.40 0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.40 3.01 8.02 -40.82 -0.33 2.68 16 35 H 0.07 0.95 6.52 -51.93 -0.34 0.61 16 36 H 0.07 0.85 6.65 -51.93 -0.35 0.51 16 37 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 38 H 0.02 0.36 6.62 -51.93 -0.34 0.02 16 39 H 0.08 1.83 5.32 -51.93 -0.28 1.55 16 40 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.09 2.53 6.17 -51.93 -0.32 2.21 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 47 H 0.03 0.48 6.73 -51.93 -0.35 0.13 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -31.95 356.62 -9.17 -41.12 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -8.52 Total: 1.12 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.46 Total: -10.65 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.62 Total: -44.14 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.95 -9.17 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.976 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds