Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 N 1.46500 * 109.47249 * 295.00397 * 3 2 1 7 7 C 1.34768 * 120.00056 * 154.99998 * 6 3 2 8 8 O 1.21278 * 120.00079 * 359.97438 * 7 6 3 9 9 C 1.50705 * 120.00177 * 179.97438 * 7 6 3 10 10 H 1.08996 * 109.47135 * 300.00342 * 9 7 6 11 11 C 1.53005 * 109.46725 * 60.00029 * 9 7 6 12 12 N 1.46892 * 109.47338 * 179.97438 * 9 7 6 13 13 C 1.46855 * 111.00279 * 299.21235 * 12 9 7 14 14 C 1.53037 * 109.52265 * 174.15784 * 13 12 9 15 15 C 1.53125 * 109.27814 * 59.18137 * 14 13 12 16 16 C 1.50693 * 109.52168 * 182.43633 * 15 14 13 17 17 H 1.08003 * 120.00260 * 119.68492 * 16 15 14 18 18 C 1.37883 * 120.00485 * 299.68271 * 16 15 14 19 19 N 1.31516 * 119.99639 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00311 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47008 * 59.99938 * 20 18 16 22 22 H 1.48494 * 109.47405 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47406 * 300.00239 * 20 18 16 24 24 C 1.53118 * 109.16159 * 302.34371 * 15 14 13 25 25 C 1.46844 * 111.00233 * 175.00176 * 12 9 7 26 26 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 28 28 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 29 29 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 30 30 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 33 33 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 34 34 H 0.97001 * 119.99547 * 334.99826 * 6 3 2 35 35 H 1.08996 * 109.47059 * 60.00266 * 11 9 7 36 36 H 1.09004 * 109.46991 * 180.02562 * 11 9 7 37 37 H 1.08997 * 109.46918 * 300.00281 * 11 9 7 38 38 H 1.08999 * 109.46141 * 294.17335 * 13 12 9 39 39 H 1.09000 * 109.46027 * 54.14301 * 13 12 9 40 40 H 1.08994 * 109.50497 * 299.24051 * 14 13 12 41 41 H 1.09003 * 109.50230 * 179.12040 * 14 13 12 42 42 H 1.09002 * 109.52195 * 62.24647 * 15 14 13 43 43 H 0.96993 * 119.99911 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.50143 * 297.71388 * 24 15 14 45 45 H 1.08995 * 109.50352 * 177.59568 * 24 15 14 46 46 H 1.08997 * 109.46054 * 305.86016 * 25 12 9 47 47 H 1.09007 * 109.46140 * 65.82474 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 7 1.6524 2.0976 -1.2518 7 6 1.5255 3.4384 -1.2995 8 8 1.7318 4.1028 -0.3060 9 6 1.1273 4.1124 -2.5873 10 1 1.8662 3.8902 -3.3572 11 6 -0.2427 3.5954 -3.0309 12 7 1.0581 5.5648 -2.3789 13 6 0.0568 5.9031 -1.3594 14 6 0.1141 7.4037 -1.0644 15 6 -0.1595 8.1832 -2.3537 16 6 -0.0454 9.6611 -2.0825 17 1 0.6862 10.2526 -2.6129 18 6 -0.8749 10.2584 -1.1571 19 7 -1.7655 9.5380 -0.5108 20 14 -0.7330 12.0902 -0.8204 21 1 -0.9904 12.8451 -2.0730 22 1 -1.7298 12.4833 0.2076 23 1 0.6339 12.3987 -0.3287 24 6 0.8675 7.7767 -3.4142 25 6 0.7884 6.2653 -3.6410 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9281 2.4721 0.1262 32 1 3.9994 0.9054 -0.7161 33 1 3.8532 0.9570 1.0571 34 1 1.4870 1.5662 -2.0462 35 1 -0.9816 3.8176 -2.2610 36 1 -0.5306 4.0825 -3.9626 37 1 -0.1918 2.5177 -3.1853 38 1 -0.9364 5.6426 -1.7252 39 1 0.2653 5.3453 -0.4464 40 1 1.1027 7.6626 -0.6855 41 1 -0.6398 7.6571 -0.3190 42 1 -1.1631 7.9540 -2.7119 43 1 -2.3493 9.9582 0.1398 44 1 1.8680 8.0415 -3.0722 45 1 0.6519 8.2966 -4.3476 46 1 1.5282 5.9705 -4.3852 47 1 -0.2082 6.0030 -3.9961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397244451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -70.657840 kcal Electronic energy + Delta-G solvation = -23598.976069 eV Core-core repulsion = 20394.078000 eV Total energy + Delta-G solvation = -3204.898069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39908 -39.49071 -37.35250 -36.04260 -34.03875 -33.06361 -31.41997 -31.01680 -30.07501 -27.46977 -25.77941 -24.58274 -23.82237 -23.22032 -21.67976 -21.20459 -20.03454 -18.43379 -17.87256 -17.48773 -16.79751 -16.40092 -15.87060 -15.54390 -15.34318 -15.04196 -14.80028 -14.73255 -14.51564 -14.30272 -14.28540 -13.82742 -13.40715 -13.21366 -13.08952 -12.95322 -12.83988 -12.66958 -12.60951 -12.48233 -12.33003 -12.19868 -11.96459 -11.91247 -11.67702 -11.59931 -11.33463 -10.88298 -10.78931 -10.43483 -10.29465 -9.94929 -9.07695 -8.07089 -6.20857 1.39636 1.42370 1.49547 1.73056 2.16726 2.43837 3.10593 3.19518 3.74216 3.90017 4.04569 4.12373 4.13017 4.21552 4.31027 4.35197 4.45474 4.51614 4.60788 4.66159 4.68210 4.72592 4.77404 4.87943 4.90436 4.94709 5.02652 5.03424 5.12004 5.13794 5.21879 5.23875 5.26600 5.31315 5.35417 5.43544 5.59100 5.62639 5.68889 6.00035 6.02810 6.25748 6.35005 6.41812 6.70324 6.91274 7.41293 7.46542 8.97346 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.003741 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.578687 B = 7483.021164 C = 7746.826761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.137 3.863 4 H 0.054 0.946 5 C -0.158 4.158 6 N -0.709 5.709 7 C 0.516 3.484 8 O -0.566 6.566 9 C 0.062 3.938 10 H 0.133 0.867 11 C -0.175 4.175 12 N -0.529 5.529 13 C 0.067 3.933 14 C -0.090 4.090 15 C 0.046 3.954 16 C -0.535 4.535 17 H 0.051 0.949 18 C 0.009 3.991 19 N -0.919 5.919 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.100 4.100 25 C 0.066 3.934 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.016 0.984 41 H 0.054 0.946 42 H -0.009 1.009 43 H 0.259 0.741 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.096 0.904 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -23.230 -4.999 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.216 4.216 6 N -0.363 5.363 7 C 0.302 3.698 8 O -0.444 6.444 9 C -0.050 4.050 10 H 0.151 0.849 11 C -0.234 4.234 12 N -0.253 5.253 13 C -0.061 4.061 14 C -0.128 4.128 15 C 0.028 3.972 16 C -0.573 4.573 17 H 0.070 0.930 18 C -0.189 4.189 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.138 4.138 25 C -0.061 4.061 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.251 0.749 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.033 0.967 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.009 0.991 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.114 0.886 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.657 -22.586 -3.978 23.880 hybrid contribution -1.069 1.036 0.106 1.492 sum 5.588 -21.550 -3.872 22.597 Atomic orbital electron populations 1.21792 0.95742 1.02220 1.01481 1.21774 0.96026 0.93321 1.04531 1.21036 0.95099 0.94161 0.86447 0.92726 1.22126 0.95048 1.01151 1.03305 1.45927 1.70314 1.05769 1.14329 1.20826 0.76047 0.82783 0.90108 1.90671 1.50579 1.64870 1.38244 1.21807 0.99705 0.88206 0.95264 0.84909 1.22360 0.95625 1.03489 1.01947 1.61828 1.49299 1.05414 1.08777 1.22137 0.91264 0.97214 0.95463 1.21353 0.98471 0.92547 1.00458 1.18648 0.92874 0.93636 0.92081 1.21598 1.18381 0.94973 1.22396 0.93028 1.25793 0.94977 1.02341 0.95767 1.70033 1.22035 1.36946 1.26845 0.85666 0.77773 0.80522 0.78020 1.19279 1.20917 1.19949 1.21546 0.99112 0.94559 0.98617 1.22115 0.99751 0.93845 0.90366 0.91103 0.94308 0.92786 0.89215 0.89373 0.95134 0.90673 0.90488 0.74898 0.94067 0.90680 0.88367 0.96713 0.91027 0.96462 0.92792 0.99092 0.93188 0.93635 0.92206 0.88611 0.94800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.80 71.98 0.71 -1.28 16 2 C -0.12 -1.31 5.47 30.60 0.17 -1.14 16 3 C 0.14 2.52 2.57 44.99 0.12 2.63 16 4 H 0.05 1.39 7.58 -2.39 -0.02 1.37 16 5 C -0.16 -2.76 9.48 71.98 0.68 -2.08 16 6 N -0.71 -13.29 4.42 -442.54 -1.96 -15.25 16 7 C 0.52 14.80 6.80 87.66 0.60 15.40 16 8 O -0.57 -22.68 13.57 -3.02 -0.04 -22.73 16 9 C 0.06 1.62 2.77 44.17 0.12 1.74 16 10 H 0.13 2.63 8.08 -2.39 -0.02 2.61 16 11 C -0.18 -3.75 8.40 71.98 0.60 -3.15 16 12 N -0.53 -19.48 4.43 -875.50 -3.88 -23.36 16 13 C 0.07 2.98 4.48 86.32 0.39 3.36 16 14 C -0.09 -4.85 5.12 30.65 0.16 -4.69 16 15 C 0.05 2.48 2.16 -11.46 -0.02 2.45 16 16 C -0.54 -31.44 8.56 25.60 0.22 -31.22 16 17 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 18 C 0.01 0.55 5.31 84.66 0.45 1.00 16 19 N -0.92 -56.26 11.37 21.45 0.24 -56.02 16 20 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 24 C -0.10 -4.36 5.32 30.65 0.16 -4.20 16 25 C 0.07 2.29 5.02 86.33 0.43 2.72 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.71 7.75 -2.39 -0.02 0.69 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.41 4.67 8.02 -92.71 -0.74 3.93 16 35 H 0.04 1.11 6.52 -2.39 -0.02 1.09 16 36 H 0.07 1.57 6.65 -2.38 -0.02 1.55 16 37 H 0.10 1.29 7.56 -2.39 -0.02 1.28 16 38 H 0.01 0.66 6.62 -2.39 -0.02 0.64 16 39 H 0.07 3.37 5.32 -2.39 -0.01 3.36 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 3.26 6.17 -2.39 -0.01 3.24 16 42 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.10 2.60 8.08 -2.39 -0.02 2.58 16 47 H 0.03 1.13 6.73 -2.38 -0.02 1.12 16 Total: -1.00 -74.65 356.62 1.35 -73.29 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.19 Total: 14.54 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.78 Total: -18.45 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -5.60 Total: -94.63 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.04 Total: -22.73 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -74.65 1.35 -73.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397244451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.635 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds