Wall clock time and date at job start Tue Mar 31 2020 06:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 H 1.08995 * 109.47455 * 304.99714 * 3 2 1 5 5 C 1.53008 * 109.47027 * 184.99584 * 3 2 1 6 6 N 1.46500 * 109.47238 * 64.99987 * 3 2 1 7 7 C 1.34777 * 119.99885 * 204.99933 * 6 3 2 8 8 O 1.21277 * 120.00212 * 0.02562 * 7 6 3 9 9 C 1.50701 * 119.99915 * 179.97438 * 7 6 3 10 10 H 1.08999 * 109.47110 * 32.80527 * 9 7 6 11 11 C 1.53005 * 109.47198 * 272.80570 * 9 7 6 12 12 N 1.46899 * 109.47075 * 152.80899 * 9 7 6 13 13 C 1.46843 * 111.00265 * 172.83191 * 12 9 7 14 14 C 1.53034 * 109.52784 * 185.83822 * 13 12 9 15 15 C 1.53124 * 109.27589 * 300.81460 * 14 13 12 16 16 C 1.53121 * 109.15481 * 57.65557 * 15 14 13 17 17 H 1.09000 * 109.54164 * 62.30759 * 16 15 14 18 18 C 1.50706 * 109.49917 * 182.40199 * 16 15 14 19 19 H 1.08004 * 119.99664 * 119.80042 * 18 16 15 20 20 C 1.37873 * 120.00074 * 299.80281 * 18 16 15 21 21 N 1.31502 * 120.00268 * 0.02562 * 20 18 16 22 22 Si 1.86807 * 119.99880 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46846 * 59.99840 * 22 20 18 24 24 H 1.48495 * 109.46804 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46881 * 300.00043 * 22 20 18 26 26 C 1.46853 * 110.99857 * 297.03435 * 12 9 7 27 27 H 1.09002 * 109.46977 * 300.00584 * 1 2 3 28 28 H 1.09003 * 109.46336 * 59.99815 * 1 2 3 29 29 H 1.08991 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47443 * 239.99754 * 2 1 3 31 31 H 1.09005 * 109.46589 * 119.99455 * 2 1 3 32 32 H 1.09000 * 109.46913 * 60.00091 * 5 3 2 33 33 H 1.08997 * 109.46951 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.46693 * 299.99849 * 5 3 2 35 35 H 0.97003 * 120.00293 * 24.99794 * 6 3 2 36 36 H 1.09000 * 109.47050 * 179.97438 * 11 9 7 37 37 H 1.08999 * 109.47054 * 299.99991 * 11 9 7 38 38 H 1.08996 * 109.46889 * 60.00052 * 11 9 7 39 39 H 1.09004 * 109.45956 * 305.85019 * 13 12 9 40 40 H 1.09005 * 109.46779 * 65.81753 * 13 12 9 41 41 H 1.09002 * 109.50857 * 180.87746 * 14 13 12 42 42 H 1.08999 * 109.53826 * 60.77427 * 14 13 12 43 43 H 1.09000 * 109.52456 * 297.74956 * 15 14 13 44 44 H 1.08996 * 109.52234 * 177.55581 * 15 14 13 45 45 H 0.97006 * 120.00641 * 180.02562 * 21 20 18 46 46 H 1.08997 * 109.46683 * 294.18145 * 26 12 9 47 47 H 1.09004 * 109.45934 * 54.14705 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 3.5650 1.4443 -0.1256 6 7 1.6525 2.0975 1.2518 7 6 1.5257 3.4385 1.2995 8 8 1.7320 4.1028 0.3061 9 6 1.1265 4.1122 2.5871 10 1 1.5283 3.5509 3.4306 11 6 -0.3996 4.1593 2.6862 12 7 1.6610 5.4803 2.6100 13 6 1.1523 6.2248 3.7690 14 6 1.6109 7.6822 3.6823 15 6 3.1411 7.7297 3.6533 16 6 3.6470 6.9070 2.4652 17 1 3.2842 7.3470 1.5362 18 6 5.1540 6.8998 2.4635 19 1 5.6896 5.9652 2.5417 20 6 5.8490 8.0863 2.3622 21 7 5.1969 9.2243 2.2675 22 14 7.7170 8.0773 2.3609 23 1 8.2073 7.2750 1.2114 24 1 8.2185 9.4699 2.2417 25 1 8.2100 7.4798 3.6278 26 6 3.1294 5.4721 2.5872 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8533 0.9569 -1.0570 33 1 3.9283 2.4719 -0.1252 34 1 3.9994 0.9052 0.7163 35 1 1.4871 1.5661 2.0463 36 1 -0.6883 4.6462 3.6177 37 1 -0.8014 4.7206 1.8427 38 1 -0.7962 3.1442 2.6692 39 1 0.0629 6.1866 3.7754 40 1 1.5366 5.7770 4.6855 41 1 1.2462 8.2309 4.5507 42 1 1.2155 8.1353 2.7732 43 1 3.5361 7.3128 4.5797 44 1 3.4715 8.7631 3.5479 45 1 5.6858 10.0591 2.1959 46 1 3.5045 5.0278 3.5092 47 1 3.4760 4.8872 1.7352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:05 Heat of formation + Delta-G solvation = -52.073179 kcal Electronic energy + Delta-G solvation = -23723.775920 eV Core-core repulsion = 20519.683743 eV Total energy + Delta-G solvation = -3204.092178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98955 -38.01056 -36.23731 -34.19060 -32.48046 -31.87294 -30.18364 -29.86380 -28.89870 -25.28188 -24.35598 -23.76991 -22.46955 -21.18792 -20.59994 -19.80921 -18.59108 -16.90597 -16.64099 -16.01942 -15.30004 -14.86216 -14.50771 -14.18595 -14.01899 -13.96927 -13.54899 -13.46666 -13.11055 -12.74291 -12.55139 -12.47183 -12.26812 -12.00629 -11.81783 -11.78424 -11.53096 -11.39968 -11.31572 -11.18296 -10.87107 -10.79937 -10.64670 -10.58217 -10.03417 -9.76475 -9.39434 -9.33006 -8.99022 -8.89472 -8.61080 -8.22174 -7.61059 -5.89456 -3.95056 2.96381 3.25071 3.37004 3.41338 3.43965 4.39108 4.54695 4.58079 4.84126 4.89080 4.95226 5.24000 5.28303 5.34759 5.40412 5.43495 5.50829 5.57105 5.65680 5.72277 5.73701 5.77407 5.82528 5.87243 5.98040 6.08405 6.11127 6.17344 6.29186 6.34175 6.43708 6.58632 6.65553 6.76132 6.81204 7.05657 7.28944 7.42180 7.61641 7.71242 7.82521 7.87671 8.19984 8.26330 8.56229 8.57238 9.08381 9.68296 11.16746 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.004870 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.568372 B = 5748.562843 C = 7050.002009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.142 3.858 4 H 0.086 0.914 5 C -0.166 4.166 6 N -0.734 5.734 7 C 0.519 3.481 8 O -0.507 6.507 9 C 0.065 3.935 10 H 0.049 0.951 11 C -0.141 4.141 12 N -0.515 5.515 13 C 0.061 3.939 14 C -0.117 4.117 15 C -0.111 4.111 16 C 0.058 3.942 17 H 0.036 0.964 18 C -0.512 4.512 19 H 0.051 0.949 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.279 1.279 26 C 0.069 3.931 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.394 0.606 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.259 0.741 46 H 0.014 0.986 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -16.726 0.812 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.038 3.962 4 H 0.105 0.895 5 C -0.224 4.224 6 N -0.388 5.388 7 C 0.304 3.696 8 O -0.379 6.379 9 C -0.047 4.047 10 H 0.066 0.934 11 C -0.199 4.199 12 N -0.241 5.241 13 C -0.067 4.067 14 C -0.155 4.155 15 C -0.149 4.149 16 C 0.039 3.961 17 H 0.054 0.946 18 C -0.551 4.551 19 H 0.069 0.931 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.058 4.058 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.032 0.968 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.803 -15.775 -0.383 19.124 hybrid contribution 1.362 -0.738 1.192 1.955 sum -9.441 -16.514 0.810 19.039 Atomic orbital electron populations 1.21768 0.95439 1.01393 1.02339 1.21829 0.96436 0.95730 1.02822 1.20930 0.94928 0.92579 0.87811 0.89545 1.22199 0.95425 1.03244 1.01562 1.46145 1.72245 1.07153 1.13260 1.20568 0.76636 0.81609 0.90753 1.90731 1.47341 1.63612 1.36211 1.21525 0.96843 0.92242 0.94084 0.93358 1.21829 0.92740 1.01782 1.03500 1.61837 1.10647 1.09944 1.41666 1.22149 0.98559 0.95699 0.90281 1.21673 0.99695 0.93617 1.00481 1.21663 0.90412 1.04474 0.98329 1.18620 0.94133 0.88153 0.95200 0.94560 1.21094 0.91234 0.92589 1.50207 0.93107 1.24911 0.98019 0.95624 0.95206 1.69880 1.34991 0.97513 1.50347 0.86708 0.86195 0.76896 0.78464 1.20341 1.21308 1.20444 1.22347 0.83239 1.01903 0.98280 0.92535 0.92574 0.92784 0.90591 0.91562 0.91931 0.91491 0.92667 0.77219 0.91208 0.91064 0.92425 0.91693 0.95938 0.93443 0.91936 0.95254 0.89095 0.93066 0.96759 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.80 37.16 0.36 -0.78 16 2 C -0.13 -1.02 5.47 -26.73 -0.15 -1.17 16 3 C 0.14 1.59 2.58 -67.93 -0.17 1.42 16 4 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 5 C -0.17 -1.97 9.48 37.16 0.35 -1.62 16 6 N -0.73 -8.77 4.53 -53.80 -0.24 -9.01 16 7 C 0.52 8.44 5.91 -10.98 -0.06 8.38 16 8 O -0.51 -10.67 15.46 5.56 0.09 -10.59 16 9 C 0.07 1.01 2.47 -68.86 -0.17 0.84 16 10 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.14 -1.72 8.71 37.16 0.32 -1.39 16 12 N -0.52 -10.06 4.22 -228.08 -0.96 -11.02 16 13 C 0.06 1.07 5.06 -3.84 -0.02 1.05 16 14 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 15 C -0.11 -2.70 5.03 -26.60 -0.13 -2.84 16 16 C 0.06 1.53 2.26 -91.69 -0.21 1.32 16 17 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.51 -14.67 8.56 -34.44 -0.29 -14.97 16 19 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.82 5.30 -17.83 -0.09 1.72 16 21 N -0.89 -26.13 11.36 55.43 0.63 -25.51 16 22 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.07 1.57 4.41 -3.83 -0.02 1.56 16 27 H 0.06 0.43 7.75 -51.93 -0.40 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.39 3.58 8.60 -40.82 -0.35 3.23 16 36 H 0.07 0.78 6.19 -51.93 -0.32 0.45 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.98 5.85 -51.93 -0.30 0.67 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 1.51 6.48 -51.93 -0.34 1.17 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -32.30 362.53 -9.23 -41.52 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -8.74 Total: 1.24 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.45 Total: -8.98 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.58 Total: -45.54 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.30 -9.23 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.549 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds