Wall clock time and date at job start Tue Mar 31 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 H 1.08998 * 109.47079 * 305.00370 * 3 2 1 5 5 C 1.53003 * 109.47147 * 184.99828 * 3 2 1 6 6 N 1.46504 * 109.46993 * 64.99945 * 3 2 1 7 7 C 1.34779 * 120.00123 * 205.00205 * 6 3 2 8 8 O 1.21279 * 119.99870 * 359.97438 * 7 6 3 9 9 C 1.50699 * 119.99982 * 179.97438 * 7 6 3 10 10 H 1.08999 * 109.47148 * 45.27441 * 9 7 6 11 11 C 1.52992 * 109.47107 * 285.27276 * 9 7 6 12 12 N 1.46898 * 109.47145 * 165.26755 * 9 7 6 13 13 C 1.46842 * 111.00174 * 196.44160 * 12 9 7 14 14 C 1.53040 * 109.52145 * 174.16287 * 13 12 9 15 15 C 1.53124 * 109.27783 * 59.18053 * 14 13 12 16 16 C 1.53120 * 109.16050 * 302.34037 * 15 14 13 17 17 H 1.09000 * 109.53459 * 297.69706 * 16 15 14 18 18 C 1.50696 * 109.50069 * 177.59720 * 16 15 14 19 19 H 1.08004 * 119.99872 * 240.20085 * 18 16 15 20 20 C 1.37869 * 120.00394 * 60.20097 * 18 16 15 21 21 N 1.31513 * 119.99883 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 120.00466 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46883 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47342 * 119.99631 * 22 20 18 25 25 H 1.48496 * 109.47426 * 240.00147 * 22 20 18 26 26 C 1.46853 * 110.99589 * 72.22950 * 12 9 7 27 27 H 1.08998 * 109.47702 * 299.99718 * 1 2 3 28 28 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47127 * 60.00082 * 1 2 3 30 30 H 1.08999 * 109.47101 * 120.00474 * 2 1 3 31 31 H 1.09001 * 109.46833 * 240.00077 * 2 1 3 32 32 H 1.09004 * 109.46846 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.47063 * 300.00215 * 5 3 2 34 34 H 1.08995 * 109.46717 * 60.00397 * 5 3 2 35 35 H 0.97001 * 120.00036 * 25.00270 * 6 3 2 36 36 H 1.08996 * 109.47312 * 60.00119 * 11 9 7 37 37 H 1.09006 * 109.47213 * 180.02562 * 11 9 7 38 38 H 1.08998 * 109.47204 * 299.99547 * 11 9 7 39 39 H 1.08997 * 109.46309 * 294.17579 * 13 12 9 40 40 H 1.08994 * 109.46334 * 54.14988 * 13 12 9 41 41 H 1.08997 * 109.50450 * 299.23925 * 14 13 12 42 42 H 1.09000 * 109.53430 * 179.13812 * 14 13 12 43 43 H 1.09004 * 109.52093 * 182.44234 * 15 14 13 44 44 H 1.08994 * 109.52518 * 62.25078 * 15 14 13 45 45 H 0.97004 * 120.00478 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.46674 * 305.85830 * 26 12 9 47 47 H 1.09002 * 109.46061 * 65.82611 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0974 1.2518 7 6 1.5255 3.4384 1.2997 8 8 1.7327 4.1029 0.3065 9 6 1.1263 4.1121 2.5872 10 1 1.7013 3.6902 3.4115 11 6 -0.3660 3.8875 2.8389 12 7 1.3951 5.5529 2.4898 13 6 1.3940 6.1795 3.8179 14 6 1.8191 7.6443 3.6926 15 6 0.8471 8.3750 2.7621 16 6 0.8310 7.6736 1.4011 17 1 1.8228 7.7266 0.9520 18 6 -0.1672 8.3510 0.4979 19 1 -1.0014 7.7923 0.0999 20 6 -0.0156 9.6838 0.1796 21 7 1.0000 10.3643 0.6646 22 14 -1.2525 10.5233 -0.9406 23 1 -2.2930 9.5459 -1.3494 24 1 -1.8902 11.6519 -0.2162 25 1 -0.5574 11.0391 -2.1472 26 6 0.4345 6.2080 1.5928 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 3.9281 2.4720 -0.1261 33 1 3.9994 0.9052 0.7161 34 1 3.8531 0.9570 -1.0571 35 1 1.4871 1.5660 2.0463 36 1 -0.5654 2.8183 2.9112 37 1 -0.6549 4.3751 3.7700 38 1 -0.9410 4.3094 2.0146 39 1 0.3917 6.1273 4.2432 40 1 2.0923 5.6530 4.4684 41 1 2.8267 7.6968 3.2802 42 1 1.8036 8.1137 4.6763 43 1 1.1710 9.4081 2.6357 44 1 -0.1537 8.3563 3.1935 45 1 1.1065 11.3022 0.4409 46 1 0.4359 5.7021 0.6272 47 1 -0.5633 6.1556 2.0285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:09 Heat of formation + Delta-G solvation = -51.257186 kcal Electronic energy + Delta-G solvation = -23723.410270 eV Core-core repulsion = 20519.353476 eV Total energy + Delta-G solvation = -3204.056793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.02936 -38.07611 -36.21917 -34.14393 -32.50945 -31.92970 -29.97642 -29.73755 -28.68193 -25.03326 -24.84388 -23.87988 -22.30578 -21.33762 -20.69401 -19.91634 -18.27915 -16.74250 -16.56337 -16.03524 -15.11391 -14.80530 -14.40112 -14.17923 -14.08223 -13.89717 -13.71446 -13.50402 -13.32511 -12.83019 -12.51500 -12.32374 -12.23674 -12.05077 -11.92417 -11.65185 -11.52245 -11.36073 -11.34469 -11.14472 -10.86984 -10.82344 -10.55961 -10.52042 -9.99599 -9.75218 -9.47068 -9.30558 -8.97236 -8.77939 -8.49842 -8.19224 -7.53878 -5.86237 -3.90926 2.99310 3.23435 3.37040 3.44616 3.49013 4.47065 4.54035 4.63938 4.84391 4.88112 4.97464 5.21304 5.25812 5.31354 5.41898 5.43907 5.47501 5.61935 5.65294 5.70670 5.72707 5.74043 5.79689 5.91834 5.99373 6.05429 6.08964 6.20382 6.23515 6.33987 6.53062 6.60908 6.75243 6.78881 6.85735 7.19219 7.32708 7.46343 7.65033 7.75596 7.87342 7.93156 8.25609 8.30619 8.59075 8.62079 9.13365 9.72316 11.20152 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019020 B = 0.004456 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.768371 B = 6281.467058 C = 6946.047652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.141 3.859 4 H 0.087 0.913 5 C -0.163 4.163 6 N -0.734 5.734 7 C 0.519 3.481 8 O -0.505 6.505 9 C 0.065 3.935 10 H 0.092 0.908 11 C -0.179 4.179 12 N -0.517 5.517 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.056 3.944 17 H 0.034 0.966 18 C -0.507 4.507 19 H 0.052 0.948 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.063 3.937 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.394 0.606 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.025 0.975 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.257 0.743 46 H 0.079 0.921 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -20.194 5.207 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.037 3.963 4 H 0.105 0.895 5 C -0.222 4.222 6 N -0.388 5.388 7 C 0.304 3.696 8 O -0.378 6.378 9 C -0.048 4.048 10 H 0.110 0.890 11 C -0.238 4.238 12 N -0.241 5.241 13 C -0.064 4.064 14 C -0.154 4.154 15 C -0.149 4.149 16 C 0.037 3.963 17 H 0.052 0.948 18 C -0.546 4.546 19 H 0.070 0.930 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.063 4.063 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.728 -19.430 4.243 19.963 hybrid contribution -1.510 0.092 0.222 1.529 sum 0.218 -19.337 4.466 19.847 Atomic orbital electron populations 1.21773 0.95376 1.01408 1.02482 1.21821 0.96515 0.95694 1.02713 1.20925 0.94774 0.92641 0.88000 0.89484 1.22179 0.95608 1.02936 1.01464 1.46110 1.72460 1.07087 1.13154 1.20647 0.76632 0.81569 0.90714 1.90731 1.47404 1.63328 1.36320 1.21567 0.95769 0.92416 0.95067 0.89013 1.22366 0.96552 1.01609 1.03266 1.61952 1.52551 0.98646 1.10959 1.22066 0.98455 0.96544 0.89377 1.21666 1.01270 0.93305 0.99190 1.21666 0.95421 1.02332 0.95484 1.18640 0.97488 0.87472 0.92677 0.94773 1.21185 1.10106 0.94988 1.28324 0.92958 1.24920 0.95460 0.97454 0.96080 1.69908 1.29428 1.08783 1.44802 0.86597 0.81550 0.79444 0.80754 1.19919 1.21197 1.21093 1.22497 0.90522 0.98061 0.95204 0.92494 0.92794 0.92500 0.91627 0.90646 0.91687 0.92767 0.92004 0.77272 0.92456 0.91574 0.91060 0.95691 0.92578 0.92076 0.93523 0.89186 0.95284 0.93271 0.90266 0.96497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.80 37.16 0.36 -0.83 16 2 C -0.13 -0.97 5.47 -26.73 -0.15 -1.12 16 3 C 0.14 1.50 2.57 -67.93 -0.17 1.33 16 4 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 5 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 6 N -0.73 -8.21 4.53 -53.80 -0.24 -8.46 16 7 C 0.52 8.19 6.93 -10.98 -0.08 8.11 16 8 O -0.51 -10.56 13.97 5.56 0.08 -10.49 16 9 C 0.06 0.97 2.70 -68.87 -0.19 0.78 16 10 H 0.09 1.13 7.86 -51.93 -0.41 0.72 16 11 C -0.18 -2.35 8.30 37.15 0.31 -2.04 16 12 N -0.52 -9.99 4.35 -228.08 -0.99 -10.98 16 13 C 0.06 1.12 5.22 -3.83 -0.02 1.10 16 14 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 15 C -0.11 -2.72 5.03 -26.61 -0.13 -2.85 16 16 C 0.06 1.49 2.26 -91.69 -0.21 1.28 16 17 H 0.03 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.51 -14.65 8.56 -34.45 -0.29 -14.95 16 19 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -26.36 11.36 55.43 0.63 -25.74 16 22 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.06 1.45 3.39 -3.83 -0.01 1.43 16 27 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.39 3.22 8.60 -40.82 -0.35 2.87 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.85 7.09 -51.93 -0.37 0.48 16 38 H 0.07 1.11 6.44 -51.93 -0.33 0.77 16 39 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 40 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 2.46 6.16 -51.93 -0.32 2.14 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.08 1.96 5.90 -51.93 -0.31 1.65 16 47 H 0.02 0.38 6.59 -51.93 -0.34 0.04 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -32.44 359.00 -9.25 -41.69 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.62 Total: 1.41 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.48 Total: -9.93 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.61 Total: -45.17 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.44 -9.25 -41.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.571 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds