Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47226 * 2 1 4 4 H 1.08997 * 109.46883 * 305.00397 * 3 2 1 5 5 C 1.52996 * 109.47270 * 184.99963 * 3 2 1 6 6 N 1.46505 * 109.46900 * 65.00098 * 3 2 1 7 7 C 1.34771 * 119.99758 * 205.00516 * 6 3 2 8 8 O 1.21283 * 120.00029 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99898 * 180.02562 * 7 6 3 10 10 H 1.09003 * 109.46800 * 309.88552 * 9 7 6 11 11 C 1.52998 * 109.46859 * 69.88532 * 9 7 6 12 12 N 1.46893 * 109.47078 * 189.88672 * 9 7 6 13 13 C 1.46852 * 111.00150 * 166.62941 * 12 9 7 14 14 C 1.53036 * 109.52470 * 185.84140 * 13 12 9 15 15 C 1.53124 * 109.27763 * 300.81731 * 14 13 12 16 16 C 1.53122 * 109.16056 * 57.65453 * 15 14 13 17 17 H 1.09004 * 109.50118 * 62.32589 * 16 15 14 18 18 C 1.50701 * 109.50329 * 182.40585 * 16 15 14 19 19 H 1.08004 * 119.99689 * 120.00054 * 18 16 15 20 20 C 1.37873 * 119.99828 * 300.00405 * 18 16 15 21 21 N 1.31514 * 120.00256 * 359.97438 * 20 18 16 22 22 Si 1.86808 * 119.99810 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46885 * 59.99863 * 22 20 18 24 24 H 1.48497 * 109.46777 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46963 * 300.00073 * 22 20 18 26 26 C 1.46854 * 111.00299 * 290.83679 * 12 9 7 27 27 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47328 * 299.99708 * 1 2 3 29 29 H 1.09003 * 109.47286 * 60.00238 * 1 2 3 30 30 H 1.09000 * 109.47328 * 240.00292 * 2 1 3 31 31 H 1.08995 * 109.47451 * 120.00389 * 2 1 3 32 32 H 1.08998 * 109.47147 * 59.99845 * 5 3 2 33 33 H 1.09007 * 109.47039 * 300.00113 * 5 3 2 34 34 H 1.09003 * 109.47309 * 180.02562 * 5 3 2 35 35 H 0.96997 * 119.99844 * 24.99465 * 6 3 2 36 36 H 1.08994 * 109.47336 * 60.00304 * 11 9 7 37 37 H 1.09004 * 109.47005 * 180.02562 * 11 9 7 38 38 H 1.08996 * 109.47135 * 299.99618 * 11 9 7 39 39 H 1.08998 * 109.45735 * 305.85272 * 13 12 9 40 40 H 1.08995 * 109.46411 * 65.81998 * 13 12 9 41 41 H 1.08997 * 109.50861 * 60.75438 * 14 13 12 42 42 H 1.08992 * 109.50214 * 180.88226 * 14 13 12 43 43 H 1.08994 * 109.52516 * 177.55935 * 15 14 13 44 44 H 1.09004 * 109.52223 * 297.75366 * 15 14 13 45 45 H 0.97001 * 119.99961 * 180.02562 * 21 20 18 46 46 H 1.08994 * 109.45806 * 294.18096 * 26 12 9 47 47 H 1.09001 * 109.45912 * 54.14369 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0975 1.2519 7 6 1.5255 3.4384 1.2996 8 8 1.7326 4.1028 0.3064 9 6 1.1274 4.1122 2.5875 10 1 0.2428 3.6229 2.9952 11 6 2.2760 4.0095 3.5930 12 7 0.8287 5.5268 2.3280 13 6 0.1405 6.1379 3.4723 14 6 -0.2831 7.5638 3.1125 15 6 0.9574 8.3817 2.7429 16 6 1.6824 7.6978 1.5805 17 1 1.0294 7.6738 0.7080 18 6 2.9369 8.4643 1.2491 19 1 3.8996 7.9795 1.3166 20 6 2.8555 9.7845 0.8599 21 7 1.6831 10.3747 0.7773 22 14 4.4106 10.7349 0.4498 23 1 5.1135 10.0711 -0.6774 24 1 4.0542 12.1232 0.0616 25 1 5.2999 10.7655 1.6386 26 6 2.0490 6.2681 1.9847 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8531 0.9570 -1.0571 33 1 3.9994 0.9053 0.7162 34 1 3.9282 2.4720 -0.1253 35 1 1.4870 1.5660 2.0463 36 1 3.1606 4.4988 3.1853 37 1 1.9879 4.4965 4.5247 38 1 2.4976 2.9599 3.7856 39 1 -0.7420 5.5490 3.7221 40 1 0.8137 6.1644 4.3291 41 1 -0.9672 7.5371 2.2643 42 1 -0.7800 8.0224 3.9673 43 1 0.6561 9.3857 2.4441 44 1 1.6240 8.4413 3.6033 45 1 1.6259 11.3034 0.5031 46 1 2.7133 6.2938 2.8485 47 1 2.5527 5.7736 1.1541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = -50.546852 kcal Electronic energy + Delta-G solvation = -23732.276524 eV Core-core repulsion = 20528.250533 eV Total energy + Delta-G solvation = -3204.025991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04505 -38.06516 -36.21564 -34.15310 -32.52569 -31.90254 -29.97262 -29.72607 -28.69451 -24.97936 -24.85068 -23.89881 -22.31591 -21.32232 -20.71483 -19.91520 -18.27566 -16.71317 -16.58051 -15.99244 -15.07487 -14.98407 -14.35826 -14.11224 -13.98999 -13.93953 -13.77614 -13.50418 -13.29969 -12.82560 -12.55957 -12.40511 -12.19755 -12.02169 -11.93195 -11.60390 -11.49477 -11.42903 -11.25828 -11.19806 -10.82993 -10.81701 -10.59058 -10.54389 -9.99677 -9.74617 -9.47367 -9.28623 -8.94856 -8.78806 -8.50145 -8.18262 -7.53548 -5.85563 -3.90465 2.99160 3.23192 3.39821 3.43761 3.46943 4.46936 4.54088 4.64107 4.83229 4.89041 4.97124 5.22278 5.25360 5.31248 5.42337 5.44253 5.47513 5.61738 5.64929 5.70444 5.72840 5.74235 5.80485 5.91744 5.99360 6.05617 6.08878 6.19442 6.23764 6.34707 6.53557 6.60794 6.75939 6.79337 6.86260 7.19981 7.33187 7.46718 7.64840 7.76021 7.87301 7.93646 8.26124 8.31326 8.58999 8.62446 9.13338 9.72591 11.20671 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.004483 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.289209 B = 6244.061291 C = 7052.820170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.734 5.734 7 C 0.518 3.482 8 O -0.504 6.504 9 C 0.065 3.935 10 H 0.093 0.907 11 C -0.180 4.180 12 N -0.516 5.516 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.057 3.943 17 H 0.034 0.966 18 C -0.509 4.509 19 H 0.051 0.949 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.062 3.938 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.259 0.741 46 H 0.016 0.984 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -20.245 4.529 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.037 3.963 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.388 5.388 7 C 0.303 3.697 8 O -0.377 6.377 9 C -0.048 4.048 10 H 0.111 0.889 11 C -0.239 4.239 12 N -0.240 5.240 13 C -0.065 4.065 14 C -0.154 4.154 15 C -0.149 4.149 16 C 0.038 3.962 17 H 0.052 0.948 18 C -0.548 4.548 19 H 0.069 0.931 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.205 1.205 26 C -0.064 4.064 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.227 0.773 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.374 -19.516 3.318 19.938 hybrid contribution 1.322 0.196 0.952 1.641 sum -1.052 -19.320 4.270 19.814 Atomic orbital electron populations 1.21770 0.95345 1.01390 1.02505 1.21820 0.96542 0.95672 1.02704 1.20928 0.94727 0.92669 0.88010 0.89424 1.22185 0.95645 1.02898 1.01510 1.46103 1.72485 1.07092 1.13113 1.20635 0.76725 0.81630 0.90664 1.90734 1.47372 1.63310 1.36248 1.21576 0.98199 0.92987 0.92068 0.88863 1.22379 0.99938 1.01893 0.99711 1.61971 1.26970 0.98595 1.36506 1.22066 0.96691 0.96637 0.91069 1.21666 1.00170 0.93659 0.99936 1.21672 0.93675 1.01538 0.98039 1.18622 0.95573 0.87725 0.94243 0.94787 1.21113 0.92798 0.95968 1.44896 0.93082 1.24916 0.95739 0.97648 0.95547 1.69886 1.22818 1.12096 1.48126 0.86716 0.83859 0.78958 0.78773 1.20345 1.21373 1.20476 1.22510 0.88245 0.97020 0.98634 0.92808 0.92469 0.92487 0.90651 0.91646 0.91951 0.92777 0.91758 0.77266 0.91157 0.91549 0.92442 0.92578 0.95669 0.92064 0.93530 0.89157 0.95307 0.93153 0.96594 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.80 37.15 0.36 -0.82 16 2 C -0.13 -0.97 5.47 -26.73 -0.15 -1.12 16 3 C 0.14 1.50 2.57 -67.93 -0.17 1.33 16 4 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 5 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 6 N -0.73 -8.22 4.53 -53.80 -0.24 -8.46 16 7 C 0.52 8.18 6.89 -10.99 -0.08 8.11 16 8 O -0.50 -10.55 13.86 5.56 0.08 -10.48 16 9 C 0.06 0.96 2.70 -68.87 -0.19 0.78 16 10 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 11 C -0.18 -2.35 8.37 37.16 0.31 -2.04 16 12 N -0.52 -10.00 4.36 -228.08 -0.99 -10.99 16 13 C 0.06 1.12 5.18 -3.83 -0.02 1.10 16 14 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 15 C -0.11 -2.73 5.02 -26.60 -0.13 -2.87 16 16 C 0.06 1.53 2.26 -91.69 -0.21 1.32 16 17 H 0.03 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.51 -14.73 8.56 -34.44 -0.29 -15.03 16 19 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 21 N -0.89 -26.39 11.35 55.43 0.63 -25.76 16 22 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.06 1.42 3.48 -3.83 -0.01 1.41 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.39 3.23 8.60 -40.82 -0.35 2.88 16 36 H 0.07 1.09 6.44 -51.93 -0.33 0.75 16 37 H 0.07 0.85 6.95 -51.93 -0.36 0.48 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.84 7.98 -51.93 -0.41 0.43 16 40 H 0.03 0.43 7.00 -51.93 -0.36 0.07 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16 47 H 0.08 1.99 5.76 -51.93 -0.30 1.69 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -32.43 358.63 -9.24 -41.67 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.61 Total: 1.52 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.48 Total: -10.01 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.61 Total: -45.21 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.43 -9.24 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.878 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds