Wall clock time and date at job start Tue Mar 31 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47570 * 2 1 4 4 H 1.09006 * 109.46664 * 305.00574 * 3 2 1 5 5 C 1.52990 * 109.47422 * 184.99979 * 3 2 1 6 6 N 1.46500 * 109.46565 * 64.99702 * 3 2 1 7 7 C 1.34775 * 119.99813 * 204.99984 * 6 3 2 8 8 O 1.21284 * 119.99873 * 0.02562 * 7 6 3 9 9 C 1.50696 * 120.00021 * 180.02562 * 7 6 3 10 10 H 1.08998 * 109.47339 * 328.16173 * 9 7 6 11 11 C 1.53004 * 109.47321 * 88.16008 * 9 7 6 12 12 N 1.46904 * 109.47265 * 208.15705 * 9 7 6 13 13 C 1.46851 * 110.99622 * 53.50446 * 12 9 7 14 14 C 1.53036 * 109.51957 * 174.15975 * 13 12 9 15 15 C 1.53122 * 109.28087 * 59.18044 * 14 13 12 16 16 C 1.53124 * 109.15752 * 302.34456 * 15 14 13 17 17 H 1.09008 * 109.50309 * 297.66935 * 16 15 14 18 18 C 1.50701 * 109.50256 * 177.59522 * 16 15 14 19 19 H 1.07997 * 120.00125 * 240.00060 * 18 16 15 20 20 C 1.37876 * 120.00022 * 59.99706 * 18 16 15 21 21 N 1.31520 * 119.99892 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00221 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47152 * 89.99920 * 22 20 18 24 24 H 1.48496 * 109.47514 * 210.00332 * 22 20 18 25 25 H 1.48498 * 109.46843 * 330.00547 * 22 20 18 26 26 C 1.46842 * 111.00271 * 289.29347 * 12 9 7 27 27 H 1.08995 * 109.47198 * 59.99433 * 1 2 3 28 28 H 1.09005 * 109.46978 * 299.99555 * 1 2 3 29 29 H 1.08999 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47671 * 120.00021 * 2 1 3 31 31 H 1.09001 * 109.47379 * 240.00164 * 2 1 3 32 32 H 1.09000 * 109.47371 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47568 * 300.00160 * 5 3 2 34 34 H 1.09007 * 109.47171 * 60.00377 * 5 3 2 35 35 H 0.97001 * 120.00427 * 25.01339 * 6 3 2 36 36 H 1.08998 * 109.46779 * 59.99823 * 11 9 7 37 37 H 1.08999 * 109.47727 * 179.97438 * 11 9 7 38 38 H 1.09002 * 109.47105 * 300.00211 * 11 9 7 39 39 H 1.08996 * 109.46212 * 294.17438 * 13 12 9 40 40 H 1.08995 * 109.46119 * 54.14630 * 13 12 9 41 41 H 1.09002 * 109.50411 * 179.12028 * 14 13 12 42 42 H 1.09005 * 109.50624 * 299.19670 * 14 13 12 43 43 H 1.08991 * 109.52159 * 62.24443 * 15 14 13 44 44 H 1.09001 * 109.52176 * 182.43946 * 15 14 13 45 45 H 0.97001 * 119.99811 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.46423 * 305.85306 * 26 12 9 47 47 H 1.08994 * 109.46354 * 65.81919 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6524 2.0974 1.2518 7 6 1.5257 3.4384 1.2996 8 8 1.7321 4.1028 0.3062 9 6 1.1275 4.1121 2.5874 10 1 0.4708 3.4525 3.1547 11 6 2.3798 4.4171 3.4119 12 7 0.4221 5.3652 2.2868 13 6 -0.6996 5.1303 1.3685 14 6 -1.4966 6.4249 1.1931 15 6 -0.5757 7.5139 0.6357 16 6 0.6094 7.7049 1.5864 17 1 0.2464 8.0429 2.5571 18 6 1.5515 8.7334 1.0156 19 1 2.5741 8.4655 0.7950 20 6 1.1078 10.0165 0.7751 21 7 -0.1375 10.3429 1.0442 22 14 2.2757 11.2916 0.0683 23 1 2.2085 11.2563 -1.4147 24 1 1.8854 12.6411 0.5496 25 1 3.6618 10.9910 0.5082 26 6 1.3453 6.3732 1.7504 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9282 2.4720 -0.1262 33 1 3.9995 0.9053 0.7160 34 1 3.8532 0.9570 -1.0572 35 1 1.4872 1.5661 2.0463 36 1 3.0364 5.0767 2.8447 37 1 2.0919 4.9049 4.3432 38 1 2.9033 3.4874 3.6350 39 1 -0.3154 4.8064 0.4013 40 1 -1.3489 4.3568 1.7787 41 1 -2.3198 6.2543 0.4994 42 1 -1.8933 6.7416 2.1577 43 1 -0.2102 7.2142 -0.3464 44 1 -1.1284 8.4495 0.5499 45 1 -0.4498 11.2455 0.8746 46 1 2.1812 6.5026 2.4379 47 1 1.7199 6.0436 0.7814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397590655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:15 Heat of formation + Delta-G solvation = -50.522935 kcal Electronic energy + Delta-G solvation = -23951.854703 eV Core-core repulsion = 20747.829749 eV Total energy + Delta-G solvation = -3204.024954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31422 -37.89170 -36.17403 -34.06655 -32.61228 -32.00925 -30.01612 -29.77830 -28.87855 -25.15113 -24.44709 -23.84394 -22.32333 -21.17577 -20.73775 -19.90975 -18.63937 -16.83947 -16.57239 -16.03298 -15.30617 -14.91660 -14.38583 -14.17123 -14.06458 -13.92096 -13.87005 -13.53918 -12.94538 -12.73884 -12.56000 -12.34785 -12.20938 -12.01840 -11.95914 -11.79096 -11.50461 -11.30762 -11.21261 -10.99098 -10.88641 -10.81264 -10.56661 -10.45286 -9.98564 -9.86186 -9.63601 -9.31400 -9.00631 -8.88437 -8.55515 -8.19013 -7.40818 -5.86249 -3.91040 2.84406 3.26151 3.38497 3.44480 3.48292 4.42176 4.49093 4.58935 4.78733 4.83785 4.99957 5.22418 5.24946 5.34801 5.37668 5.42520 5.43611 5.56305 5.67814 5.68138 5.68763 5.82913 5.91755 5.94653 5.99045 6.09440 6.11722 6.21661 6.32036 6.42074 6.54431 6.66862 6.72362 6.87717 6.99137 7.21763 7.35963 7.46541 7.59554 7.74518 7.86461 7.90831 8.23067 8.29951 8.46283 8.63341 9.13016 9.72281 11.19877 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023216 B = 0.004348 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.764350 B = 6437.686237 C = 6756.530497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.138 3.862 4 H 0.085 0.915 5 C -0.162 4.162 6 N -0.731 5.731 7 C 0.485 3.515 8 O -0.522 6.522 9 C 0.065 3.935 10 H 0.091 0.909 11 C -0.142 4.142 12 N -0.509 5.509 13 C 0.052 3.948 14 C -0.114 4.114 15 C -0.109 4.109 16 C 0.056 3.944 17 H 0.029 0.971 18 C -0.508 4.508 19 H 0.053 0.947 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C 0.047 3.953 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.089 0.911 45 H 0.258 0.742 46 H 0.059 0.941 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -21.067 2.085 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.033 3.967 4 H 0.104 0.896 5 C -0.221 4.221 6 N -0.385 5.385 7 C 0.270 3.730 8 O -0.397 6.397 9 C -0.048 4.048 10 H 0.109 0.891 11 C -0.200 4.200 12 N -0.232 5.232 13 C -0.076 4.076 14 C -0.152 4.152 15 C -0.147 4.147 16 C 0.038 3.962 17 H 0.048 0.952 18 C -0.547 4.547 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.530 5.530 22 Si 0.717 3.283 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.080 4.080 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.667 -20.204 1.784 20.351 hybrid contribution 0.812 0.028 -0.834 1.165 sum 2.479 -20.176 0.950 20.350 Atomic orbital electron populations 1.21768 0.95317 1.01476 1.02451 1.21820 0.96564 0.95632 1.02723 1.20949 0.94745 0.92792 0.88245 0.89641 1.22163 0.95622 1.02744 1.01547 1.46403 1.71567 1.07486 1.13009 1.22463 0.76300 0.81959 0.92290 1.90709 1.48701 1.63255 1.37031 1.21937 0.97093 0.93228 0.92523 0.89129 1.21850 0.95804 1.01712 1.00627 1.62571 1.09962 1.05162 1.45531 1.22163 0.92498 0.98135 0.94772 1.21635 0.97613 0.95441 1.00487 1.21629 0.97715 0.97595 0.97776 1.18647 0.92587 0.89336 0.95680 0.95248 1.21167 0.96874 0.94817 1.41822 0.92922 1.24925 0.95052 0.98221 0.95704 1.69904 1.14999 1.19237 1.48841 0.86650 0.81401 0.80976 0.79280 1.20851 1.21344 1.20010 1.22667 0.94288 0.92429 0.98578 0.92556 0.92487 0.92708 0.91585 0.90689 0.91916 0.92699 0.91989 0.77134 0.91110 0.90502 0.92601 0.94015 0.93177 0.93724 0.92325 0.95083 0.89307 0.93230 0.92302 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.80 37.15 0.36 -0.83 16 2 C -0.13 -0.96 5.47 -26.73 -0.15 -1.11 16 3 C 0.14 1.44 2.57 -67.93 -0.17 1.26 16 4 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 5 C -0.16 -1.64 9.48 37.15 0.35 -1.29 16 6 N -0.73 -8.02 4.53 -53.81 -0.24 -8.26 16 7 C 0.48 7.37 5.98 -10.99 -0.07 7.31 16 8 O -0.52 -10.39 12.11 5.55 0.07 -10.32 16 9 C 0.07 0.97 2.95 -68.86 -0.20 0.76 16 10 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.14 -1.91 8.57 37.16 0.32 -1.59 16 12 N -0.51 -9.74 4.73 -228.09 -1.08 -10.82 16 13 C 0.05 0.99 4.89 -3.83 -0.02 0.98 16 14 C -0.11 -2.39 6.09 -26.65 -0.16 -2.55 16 15 C -0.11 -2.76 5.02 -26.60 -0.13 -2.90 16 16 C 0.06 1.49 2.26 -91.69 -0.21 1.28 16 17 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 18 C -0.51 -14.64 8.56 -34.44 -0.29 -14.93 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.89 -26.27 11.35 55.43 0.63 -25.64 16 22 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.05 1.06 3.84 -3.84 -0.01 1.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.39 3.20 8.60 -40.82 -0.35 2.85 16 36 H 0.07 1.11 6.19 -51.93 -0.32 0.79 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.87 6.09 -51.93 -0.32 0.55 16 40 H 0.05 0.83 8.12 -51.93 -0.42 0.40 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.06 1.31 5.82 -51.93 -0.30 1.01 16 47 H 0.06 1.43 5.67 -51.93 -0.29 1.14 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -31.92 356.41 -9.34 -41.26 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.58 Total: 2.23 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.48 Total: -10.89 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.69 Total: -44.72 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.92 -9.34 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397590655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.260 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds