Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47548 * 2 1 4 4 N 1.46500 * 109.47146 * 120.00570 * 2 1 3 5 5 C 1.34779 * 120.00165 * 84.99328 * 4 2 1 6 6 O 1.21282 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 2 8 8 C 1.53006 * 109.46866 * 180.02562 * 7 5 4 9 9 N 1.46902 * 109.46626 * 180.02562 * 8 7 5 10 10 C 1.46852 * 110.99931 * 294.20338 * 9 8 7 11 11 C 1.53038 * 109.52166 * 174.16462 * 10 9 8 12 12 C 1.53111 * 109.27933 * 59.17985 * 11 10 9 13 13 C 1.52999 * 109.57722 * 182.40588 * 12 11 10 14 14 C 1.50695 * 109.47441 * 294.72228 * 13 12 11 15 15 H 1.08002 * 119.99692 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00061 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99936 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47233 * 89.99929 * 18 16 14 20 20 H 1.48506 * 109.47166 * 210.00010 * 18 16 14 21 21 H 1.48493 * 109.47410 * 329.99918 * 18 16 14 22 22 C 1.53113 * 109.16361 * 302.34846 * 12 11 10 23 23 C 1.46845 * 110.99560 * 170.00278 * 9 8 7 24 24 H 1.09006 * 109.46479 * 299.99590 * 1 2 3 25 25 H 1.09001 * 109.46947 * 59.99444 * 1 2 3 26 26 H 1.08999 * 109.47584 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46773 * 240.00082 * 2 1 3 28 28 H 1.08999 * 109.47356 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47388 * 300.00837 * 3 2 1 30 30 H 1.09006 * 109.46896 * 60.00665 * 3 2 1 31 31 H 0.96996 * 119.99985 * 264.99903 * 4 2 1 32 32 H 1.08993 * 109.47512 * 60.00410 * 7 5 4 33 33 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 34 34 H 1.09000 * 109.47050 * 299.99952 * 8 7 5 35 35 H 1.09001 * 109.46801 * 60.00064 * 8 7 5 36 36 H 1.08996 * 109.46717 * 294.18527 * 10 9 8 37 37 H 1.09002 * 109.45810 * 54.15580 * 10 9 8 38 38 H 1.09009 * 109.50306 * 299.24202 * 11 10 9 39 39 H 1.09000 * 109.50216 * 179.12976 * 11 10 9 40 40 H 1.09011 * 109.52176 * 62.25284 * 12 11 10 41 41 H 1.09002 * 109.46686 * 54.71900 * 13 12 11 42 42 H 1.09001 * 109.47140 * 174.71494 * 13 12 11 43 43 H 0.97000 * 120.00268 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.50089 * 297.70933 * 22 12 11 45 45 H 1.09004 * 109.50328 * 177.59242 * 22 12 11 46 46 H 1.09000 * 109.46228 * 305.85144 * 23 9 8 47 47 H 1.09001 * 109.47085 * 65.82947 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -2.0324 1.1943 6 8 1.8589 -2.6678 0.2022 7 6 2.6499 -2.7428 2.4245 8 6 2.7016 -4.2487 2.1584 9 7 3.1913 -4.9412 3.3578 10 6 4.5872 -4.5827 3.6395 11 6 5.0166 -5.2050 4.9700 12 6 4.8674 -6.7267 4.8879 13 6 5.2379 -7.3515 6.2345 14 6 6.7001 -7.1159 6.5124 15 1 7.3049 -6.5749 5.7997 16 6 7.2658 -7.5909 7.6766 17 7 6.5293 -8.2491 8.5447 18 14 9.0786 -7.2994 8.0207 19 1 9.2433 -6.0197 8.7559 20 1 9.6119 -8.4149 8.8432 21 1 9.8216 -7.2318 6.7369 22 6 3.4155 -7.0716 4.5458 23 6 3.0325 -6.3952 3.2275 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8898 30 1 1.6769 1.9562 0.8901 31 1 2.2491 -0.1825 1.9894 32 1 1.9778 -2.5440 3.2592 33 1 3.6492 -2.3828 2.6689 34 1 1.7024 -4.6089 1.9136 35 1 3.3740 -4.4472 1.3237 36 1 5.2268 -4.9571 2.8402 37 1 4.6786 -3.4982 3.6996 38 1 4.3862 -4.8204 5.7719 39 1 6.0574 -4.9516 5.1713 40 1 5.5269 -7.1159 4.1121 41 1 4.6399 -6.8952 7.0234 42 1 5.0419 -8.4233 6.2039 43 1 6.9272 -8.5830 9.3639 44 1 2.7600 -6.7164 5.3409 45 1 3.3124 -8.1520 4.4438 46 1 1.9947 -6.6272 2.9883 47 1 3.6795 -6.7613 2.4303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399282688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = -67.894852 kcal Electronic energy + Delta-G solvation = -22273.024692 eV Core-core repulsion = 19068.246436 eV Total energy + Delta-G solvation = -3204.778257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.11063 -38.65942 -36.32554 -34.78587 -32.67826 -31.96816 -30.55712 -30.06729 -27.62348 -27.47331 -24.50313 -22.94820 -22.58755 -21.28511 -20.66892 -20.24335 -18.88848 -17.39685 -16.45727 -16.20274 -15.81722 -15.32598 -14.79289 -14.54188 -14.43087 -14.07537 -13.72749 -13.57667 -13.36317 -13.06346 -12.86000 -12.74654 -12.56752 -12.18879 -12.03661 -11.78245 -11.76332 -11.43078 -11.34706 -11.23822 -10.99515 -10.75815 -10.61296 -10.53463 -10.23346 -9.97304 -9.90272 -9.49365 -9.38103 -9.01168 -8.84157 -8.30446 -8.06452 -5.95162 -3.96462 2.48077 2.89013 3.33485 3.40012 3.43011 4.11236 4.43378 4.49133 4.64795 4.73019 4.84712 4.91373 5.06659 5.16231 5.28917 5.36692 5.37486 5.40027 5.47609 5.50746 5.54376 5.59613 5.71508 5.75374 5.86550 5.88075 5.92002 5.95653 6.04755 6.18384 6.23774 6.29102 6.49371 6.61810 6.71307 7.01733 7.14028 7.23197 7.23821 7.36790 7.42443 7.73771 7.90697 8.03452 8.06058 8.49264 9.10232 9.66783 11.16181 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030606 B = 0.002685 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.641231 B =10425.869111 C =11049.274600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.161 4.161 4 N -0.731 5.731 5 C 0.517 3.483 6 O -0.542 6.542 7 C -0.138 4.138 8 C 0.072 3.928 9 N -0.538 5.538 10 C 0.052 3.948 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.401 0.599 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.649 17.457 -14.899 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 C -0.218 4.218 4 N -0.384 5.384 5 C 0.303 3.697 6 O -0.419 6.419 7 C -0.179 4.179 8 C -0.057 4.057 9 N -0.263 5.263 10 C -0.076 4.076 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.149 4.149 23 C -0.067 4.067 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.127 17.045 -15.065 25.325 hybrid contribution 1.614 0.175 0.020 1.624 sum -9.513 17.220 -15.045 24.767 Atomic orbital electron populations 1.22187 0.95317 1.02702 1.01997 1.20921 0.94192 0.92798 0.89086 1.22077 1.01769 0.95068 1.02917 1.46172 1.68232 1.07225 1.16784 1.20831 0.76897 0.82052 0.89882 1.90697 1.49860 1.65936 1.35389 1.21680 1.03518 0.96529 0.96140 1.21734 1.01077 0.91614 0.91243 1.61939 1.20963 1.07922 1.35489 1.22276 0.87268 0.99535 0.98514 1.21541 1.01368 0.96035 0.94742 1.21238 0.93480 0.94788 1.00568 1.19115 0.96044 0.95530 0.90207 1.21259 0.95060 1.34899 1.03960 0.92741 1.25021 0.97680 0.95409 0.96435 1.69962 1.35661 1.37813 1.10143 0.86656 0.85773 0.77726 0.78203 1.20743 1.21330 1.19987 1.21694 0.98497 0.98910 0.95841 1.22084 1.00020 0.86541 0.98042 0.92468 0.91745 0.92022 0.89561 0.91940 0.90994 0.92008 0.76532 0.87920 0.88700 0.90423 0.94466 0.95442 0.91622 0.91862 0.90980 0.93084 0.96519 0.96776 0.93119 0.91595 0.92133 0.91577 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.13 0.99 3.18 -67.93 -0.22 0.77 16 3 C -0.16 -0.77 9.38 37.15 0.35 -0.42 16 4 N -0.73 -5.69 5.08 -53.81 -0.27 -5.97 16 5 C 0.52 5.62 7.79 -10.99 -0.09 5.54 16 6 O -0.54 -7.98 15.64 5.56 0.09 -7.90 16 7 C -0.14 -1.40 5.63 -27.88 -0.16 -1.56 16 8 C 0.07 0.92 4.25 -3.82 -0.02 0.91 16 9 N -0.54 -7.87 4.66 -234.66 -1.09 -8.96 16 10 C 0.05 0.78 5.29 -3.83 -0.02 0.76 16 11 C -0.10 -1.84 5.15 -26.65 -0.14 -1.98 16 12 C -0.08 -1.69 2.20 -90.50 -0.20 -1.88 16 13 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 14 C -0.51 -14.34 8.45 -34.44 -0.29 -14.63 16 15 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 23 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.40 2.10 8.60 -40.82 -0.35 1.75 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.87 6.43 -51.93 -0.33 0.53 16 34 H 0.08 1.03 7.94 -51.93 -0.41 0.61 16 35 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.86 6.21 -51.93 -0.32 0.53 16 38 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 39 H 0.07 1.42 7.06 -51.93 -0.37 1.05 16 40 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.91 8.01 -51.93 -0.42 0.50 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -32.13 368.52 -9.68 -41.82 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.86 Total: -2.47 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.81 Total: -12.43 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.63 Total: -41.22 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.13 -9.68 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399282688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.079 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds