Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47374 * 2 1 4 4 H 1.09004 * 109.46683 * 55.00520 * 3 2 1 5 5 C 1.52999 * 109.47101 * 175.00038 * 3 2 1 6 6 N 1.46497 * 109.46983 * 295.00228 * 3 2 1 7 7 C 1.34780 * 119.99566 * 155.00136 * 6 3 2 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 3 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 3 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 6 11 11 C 1.46839 * 111.00222 * 294.20814 * 10 9 7 12 12 C 1.53034 * 109.52552 * 174.16216 * 11 10 9 13 13 C 1.53123 * 109.28182 * 59.17780 * 12 11 10 14 14 C 1.52997 * 109.58011 * 182.41262 * 13 12 11 15 15 C 1.50703 * 109.46888 * 294.71564 * 14 13 12 16 16 H 1.08006 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00126 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99635 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00388 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46823 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47173 * 120.00133 * 19 17 15 22 22 H 1.48492 * 109.47190 * 240.00341 * 19 17 15 23 23 C 1.53120 * 109.16070 * 302.35293 * 13 12 11 24 24 C 1.46849 * 110.99649 * 169.99608 * 10 9 7 25 25 H 1.09000 * 109.47465 * 59.99400 * 1 2 3 26 26 H 1.08999 * 109.47715 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47285 * 299.99610 * 1 2 3 28 28 H 1.09002 * 109.47285 * 240.00390 * 2 1 3 29 29 H 1.09000 * 109.47465 * 120.00600 * 2 1 3 30 30 H 1.08993 * 109.47354 * 60.00033 * 5 3 2 31 31 H 1.09000 * 109.46920 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.47178 * 300.00239 * 5 3 2 33 33 H 0.96995 * 120.00423 * 334.99441 * 6 3 2 34 34 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 35 35 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 36 36 H 1.09006 * 109.46266 * 294.17473 * 11 10 9 37 37 H 1.09002 * 109.46276 * 54.14664 * 11 10 9 38 38 H 1.09006 * 109.50444 * 299.24199 * 12 11 10 39 39 H 1.09003 * 109.50687 * 179.12283 * 12 11 10 40 40 H 1.09005 * 109.51783 * 62.25186 * 13 12 11 41 41 H 1.08995 * 109.46884 * 54.71063 * 14 13 12 42 42 H 1.08998 * 109.47327 * 174.71809 * 14 13 12 43 43 H 0.97011 * 119.99713 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.50142 * 297.71204 * 23 13 12 45 45 H 1.08998 * 109.50777 * 177.59101 * 23 13 12 46 46 H 1.08991 * 109.46839 * 305.85721 * 24 10 9 47 47 H 1.09005 * 109.46224 * 65.84006 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5257 3.4384 -1.2994 8 8 1.7320 4.1028 -0.3060 9 6 1.1264 4.1122 -2.5870 10 7 1.0575 5.5647 -2.3786 11 6 -0.0228 5.9121 -1.4468 12 6 0.0274 7.4108 -1.1411 13 6 -0.1254 8.1982 -2.4455 14 6 -0.0160 9.6965 -2.1557 15 6 -1.1782 10.1286 -1.2991 16 1 -1.9203 9.4066 -0.9918 17 6 -1.2934 11.4454 -0.9069 18 7 -0.3893 12.3243 -1.2807 19 14 -2.7343 11.9813 0.1543 20 1 -3.6043 10.8110 0.4353 21 1 -2.2266 12.5386 1.4337 22 1 -3.5173 13.0199 -0.5620 23 6 0.9832 7.7825 -3.4164 24 6 0.9053 6.2729 -3.6560 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9994 0.9052 -0.7160 31 1 3.9281 2.4719 0.1262 32 1 3.8532 0.9569 1.0571 33 1 1.4871 1.5662 -2.0462 34 1 1.8646 3.8899 -3.3575 35 1 0.1501 3.7441 -2.9022 36 1 -0.9843 5.6654 -1.8972 37 1 0.1001 5.3485 -0.5219 38 1 0.9833 7.6559 -0.6781 39 1 -0.7842 7.6711 -0.4616 40 1 -1.0976 7.9830 -2.8890 41 1 0.9174 9.8976 -1.6299 42 1 -0.0309 10.2502 -3.0944 43 1 -0.4706 13.2509 -1.0051 44 1 1.9541 8.0333 -2.9891 45 1 0.8545 8.3082 -4.3625 46 1 1.7022 5.9715 -4.3357 47 1 -0.0607 6.0247 -4.0960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399312468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -61.224418 kcal Electronic energy + Delta-G solvation = -22780.871718 eV Core-core repulsion = 19576.382713 eV Total energy + Delta-G solvation = -3204.489005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.11240 -38.35644 -36.52383 -34.31486 -32.64087 -32.13688 -30.27568 -30.19821 -28.60796 -26.15478 -24.14672 -23.36195 -22.55121 -21.30631 -20.65062 -20.40829 -18.83389 -17.08928 -16.55318 -16.15744 -15.50274 -15.37836 -14.56093 -14.43912 -14.24698 -14.13658 -13.89442 -13.69617 -13.33588 -13.16495 -12.75362 -12.65811 -12.29567 -12.11535 -11.90023 -11.81098 -11.59039 -11.53956 -11.38891 -11.05997 -11.00682 -10.72394 -10.56943 -10.50825 -10.22796 -9.95392 -9.67472 -9.40686 -9.19949 -8.88649 -8.79169 -8.25741 -8.02951 -5.90752 -3.91600 2.67188 2.96462 3.36497 3.43863 3.47967 4.17887 4.36224 4.53557 4.66612 4.71603 4.78027 5.12077 5.13789 5.20358 5.25541 5.29505 5.41009 5.44823 5.45271 5.52872 5.57262 5.58231 5.69052 5.80530 5.81971 5.87698 5.96229 6.00589 6.10022 6.24499 6.33907 6.44158 6.52074 6.68645 6.76706 7.07507 7.18234 7.29009 7.31620 7.46105 7.49025 7.78502 7.96172 8.10888 8.26587 8.54346 9.15205 9.71497 11.20743 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025162 B = 0.003161 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.503114 B = 8855.360203 C = 9373.658835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.164 4.164 6 N -0.733 5.733 7 C 0.513 3.487 8 O -0.511 6.511 9 C 0.036 3.964 10 N -0.519 5.519 11 C 0.052 3.948 12 C -0.096 4.096 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.111 4.111 24 C 0.060 3.940 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.017 0.983 42 H 0.014 0.986 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -26.326 -2.728 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.387 5.387 7 C 0.298 3.702 8 O -0.385 6.385 9 C -0.096 4.096 10 N -0.244 5.244 11 C -0.075 4.075 12 C -0.134 4.134 13 C -0.101 4.101 14 C -0.009 4.009 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.212 1.212 23 C -0.149 4.149 24 C -0.067 4.067 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.127 -25.479 -1.757 26.049 hybrid contribution -1.578 -0.170 -0.238 1.605 sum 3.549 -25.649 -1.995 25.970 Atomic orbital electron populations 1.21775 0.95303 1.01599 1.02407 1.21830 0.96564 0.95537 1.02891 1.20955 0.94862 0.92799 0.87735 0.89437 1.22181 0.95465 1.02876 1.01706 1.46110 1.72119 1.07063 1.13418 1.20680 0.76948 0.81747 0.90786 1.90714 1.47883 1.63501 1.36383 1.21934 1.01392 0.90908 0.95322 1.61666 1.47598 1.02894 1.12255 1.22367 0.89744 0.99217 0.96165 1.21495 1.02577 0.90925 0.98384 1.21252 0.96008 0.98906 0.93904 1.19118 0.97095 0.88227 0.96492 1.21308 1.08901 0.93707 1.31061 0.92674 1.25021 0.96169 0.96948 0.96440 1.69985 1.34719 1.02812 1.46154 0.86599 0.82838 0.78577 0.80375 1.19804 1.21095 1.21169 1.21683 1.00918 0.92406 0.99882 1.22142 0.99052 0.95987 0.89525 0.92562 0.92640 0.92483 0.91525 0.90500 0.92655 0.91778 0.91834 0.77031 0.88334 0.92513 0.96194 0.89854 0.91741 0.91074 0.93173 0.96468 0.96813 0.93218 0.91500 0.92063 0.91624 0.95354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.80 37.15 0.36 -0.59 16 2 C -0.13 -0.75 5.47 -26.73 -0.15 -0.89 16 3 C 0.14 1.18 2.57 -67.93 -0.17 1.01 16 4 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 5 C -0.16 -1.35 9.48 37.16 0.35 -1.00 16 6 N -0.73 -6.29 4.53 -53.80 -0.24 -6.53 16 7 C 0.51 6.40 7.47 -10.98 -0.08 6.32 16 8 O -0.51 -8.74 13.99 5.56 0.08 -8.67 16 9 C 0.04 0.41 5.45 -4.97 -0.03 0.39 16 10 N -0.52 -8.10 4.40 -236.11 -1.04 -9.14 16 11 C 0.05 0.91 5.10 -3.84 -0.02 0.89 16 12 C -0.10 -1.99 5.15 -26.65 -0.14 -2.12 16 13 C -0.08 -1.75 2.20 -90.50 -0.20 -1.95 16 14 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 15 C -0.51 -14.72 8.45 -34.44 -0.29 -15.01 16 16 H 0.06 1.55 7.08 -52.48 -0.37 1.18 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 19 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 C -0.11 -2.00 5.38 -26.65 -0.14 -2.14 16 24 C 0.06 0.89 5.46 -3.83 -0.02 0.87 16 25 H 0.06 0.36 7.75 -51.93 -0.40 -0.04 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.40 2.24 8.60 -40.82 -0.35 1.89 16 34 H 0.10 0.90 7.99 -51.93 -0.41 0.49 16 35 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 1.51 5.78 -51.93 -0.30 1.21 16 38 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.07 1.55 7.06 -51.93 -0.37 1.19 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 47 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -33.41 367.38 -9.61 -43.03 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.91 Total: -2.41 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.75 Total: -12.11 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.55 Total: -42.57 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.41 -9.61 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399312468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.199 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds