Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47374 * 2 1 4 4 H 1.09004 * 109.46683 * 55.00520 * 3 2 1 5 5 C 1.52999 * 109.47101 * 175.00038 * 3 2 1 6 6 N 1.46497 * 109.46983 * 295.00228 * 3 2 1 7 7 C 1.34780 * 119.99566 * 155.00136 * 6 3 2 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 3 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 3 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 6 11 11 C 1.46839 * 111.00222 * 294.20814 * 10 9 7 12 12 C 1.53034 * 109.52552 * 174.16216 * 11 10 9 13 13 C 1.53123 * 109.28182 * 59.17780 * 12 11 10 14 14 C 1.52997 * 109.58011 * 182.41262 * 13 12 11 15 15 C 1.50703 * 109.46888 * 294.71564 * 14 13 12 16 16 H 1.08006 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00126 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99635 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00388 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46823 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47173 * 120.00133 * 19 17 15 22 22 H 1.48492 * 109.47190 * 240.00341 * 19 17 15 23 23 C 1.53120 * 109.16070 * 302.35293 * 13 12 11 24 24 C 1.46849 * 110.99649 * 169.99608 * 10 9 7 25 25 H 1.09000 * 109.47465 * 59.99400 * 1 2 3 26 26 H 1.08999 * 109.47715 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47285 * 299.99610 * 1 2 3 28 28 H 1.09002 * 109.47285 * 240.00390 * 2 1 3 29 29 H 1.09000 * 109.47465 * 120.00600 * 2 1 3 30 30 H 1.08993 * 109.47354 * 60.00033 * 5 3 2 31 31 H 1.09000 * 109.46920 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.47178 * 300.00239 * 5 3 2 33 33 H 0.96995 * 120.00423 * 334.99441 * 6 3 2 34 34 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 35 35 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 36 36 H 1.09006 * 109.46266 * 294.17473 * 11 10 9 37 37 H 1.09002 * 109.46276 * 54.14664 * 11 10 9 38 38 H 1.09006 * 109.50444 * 299.24199 * 12 11 10 39 39 H 1.09003 * 109.50687 * 179.12283 * 12 11 10 40 40 H 1.09005 * 109.51783 * 62.25186 * 13 12 11 41 41 H 1.08995 * 109.46884 * 54.71063 * 14 13 12 42 42 H 1.08998 * 109.47327 * 174.71809 * 14 13 12 43 43 H 0.97011 * 119.99713 * 179.97438 * 18 17 15 44 44 H 1.09005 * 109.50142 * 297.71204 * 23 13 12 45 45 H 1.08998 * 109.50777 * 177.59101 * 23 13 12 46 46 H 1.08991 * 109.46839 * 305.85721 * 24 10 9 47 47 H 1.09005 * 109.46224 * 65.84006 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5257 3.4384 -1.2994 8 8 1.7320 4.1028 -0.3060 9 6 1.1264 4.1122 -2.5870 10 7 1.0575 5.5647 -2.3786 11 6 -0.0228 5.9121 -1.4468 12 6 0.0274 7.4108 -1.1411 13 6 -0.1254 8.1982 -2.4455 14 6 -0.0160 9.6965 -2.1557 15 6 -1.1782 10.1286 -1.2991 16 1 -1.9203 9.4066 -0.9918 17 6 -1.2934 11.4454 -0.9069 18 7 -0.3893 12.3243 -1.2807 19 14 -2.7343 11.9813 0.1543 20 1 -3.6043 10.8110 0.4353 21 1 -2.2266 12.5386 1.4337 22 1 -3.5173 13.0199 -0.5620 23 6 0.9832 7.7825 -3.4164 24 6 0.9053 6.2729 -3.6560 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9994 0.9052 -0.7160 31 1 3.9281 2.4719 0.1262 32 1 3.8532 0.9569 1.0571 33 1 1.4871 1.5662 -2.0462 34 1 1.8646 3.8899 -3.3575 35 1 0.1501 3.7441 -2.9022 36 1 -0.9843 5.6654 -1.8972 37 1 0.1001 5.3485 -0.5219 38 1 0.9833 7.6559 -0.6781 39 1 -0.7842 7.6711 -0.4616 40 1 -1.0976 7.9830 -2.8890 41 1 0.9174 9.8976 -1.6299 42 1 -0.0309 10.2502 -3.0944 43 1 -0.4706 13.2509 -1.0051 44 1 1.9541 8.0333 -2.9891 45 1 0.8545 8.3082 -4.3625 46 1 1.7022 5.9715 -4.3357 47 1 -0.0607 6.0247 -4.0960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399312468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -83.694234 kcal Electronic energy + Delta-G solvation = -22781.846082 eV Core-core repulsion = 19576.382713 eV Total energy + Delta-G solvation = -3205.463369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10536 -39.63440 -37.39395 -35.99573 -34.24738 -33.28501 -31.68656 -30.97565 -30.13781 -27.66937 -25.37734 -24.53211 -23.99987 -22.45951 -21.75855 -21.38167 -20.44655 -18.46428 -17.96994 -17.39335 -16.70511 -16.44265 -16.36033 -15.61248 -15.26989 -15.10633 -14.86806 -14.74936 -14.57586 -14.33487 -14.14769 -14.02906 -13.62776 -13.34114 -13.19687 -12.93627 -12.86664 -12.62669 -12.60017 -12.37523 -12.20835 -12.16679 -12.01357 -11.93316 -11.67488 -11.60636 -11.25955 -11.05732 -10.72332 -10.58581 -10.47819 -9.99865 -9.17410 -8.17982 -6.27499 1.37570 1.38694 1.51584 1.74690 2.16331 2.41075 3.06619 3.15057 3.76146 3.94096 4.02660 4.06811 4.11178 4.13670 4.21125 4.35262 4.42208 4.44400 4.51324 4.61731 4.66400 4.69795 4.76762 4.78135 4.84520 4.87644 5.00117 5.01505 5.10428 5.13520 5.14813 5.21036 5.30045 5.38654 5.42518 5.43566 5.44377 5.57456 5.66093 5.80873 5.88772 6.11127 6.20078 6.30213 6.70499 6.88658 7.40626 7.42088 8.94311 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025162 B = 0.003161 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.503114 B = 8855.360203 C = 9373.658835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.139 3.861 4 H 0.056 0.944 5 C -0.159 4.159 6 N -0.713 5.713 7 C 0.508 3.492 8 O -0.568 6.568 9 C 0.038 3.962 10 N -0.542 5.542 11 C 0.068 3.932 12 C -0.090 4.090 13 C -0.074 4.074 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.059 0.941 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.962 3.038 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.276 1.276 23 C -0.109 4.109 24 C 0.069 3.931 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.053 0.947 41 H -0.017 1.017 42 H -0.010 1.010 43 H 0.262 0.738 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -29.348 -4.025 29.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.034 3.966 4 H 0.075 0.925 5 C -0.217 4.217 6 N -0.367 5.367 7 C 0.295 3.705 8 O -0.446 6.446 9 C -0.093 4.093 10 N -0.267 5.267 11 C -0.059 4.059 12 C -0.128 4.128 13 C -0.092 4.092 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.201 4.201 18 N -0.577 5.577 19 Si 0.786 3.214 20 H -0.186 1.186 21 H -0.206 1.206 22 H -0.202 1.202 23 C -0.146 4.146 24 C -0.058 4.058 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.252 0.748 34 H 0.150 0.850 35 H 0.102 0.898 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.001 0.999 42 H 0.008 0.992 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.117 0.883 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.299 -28.567 -3.091 29.053 hybrid contribution -1.261 0.750 0.170 1.477 sum 3.038 -27.817 -2.921 28.134 Atomic orbital electron populations 1.21784 0.95633 1.02202 1.01547 1.21777 0.96120 0.93486 1.04415 1.20998 0.94934 0.94085 0.86594 0.92542 1.22131 0.95233 1.01157 1.03207 1.45952 1.70433 1.06049 1.14301 1.21002 0.76288 0.82666 0.90522 1.90706 1.50686 1.64932 1.38278 1.22060 1.03808 0.87955 0.95436 1.61507 1.46868 1.05885 1.12440 1.22053 0.91193 0.95910 0.96792 1.21352 1.00165 0.93903 0.97416 1.21092 0.97607 0.95250 0.95264 1.19009 0.94926 0.91887 0.94533 1.21688 1.09493 0.94159 1.31375 0.92327 1.25980 0.99216 0.97058 0.97850 1.70120 1.36796 1.03294 1.47473 0.85448 0.79162 0.78442 0.78318 1.18625 1.20628 1.20170 1.21612 0.98325 0.95769 0.98930 1.22081 1.01235 0.92871 0.89625 0.92677 0.91287 0.94143 0.89371 0.89554 0.90821 0.95037 0.90651 0.74834 0.85025 0.89799 0.94899 0.90828 0.94475 0.93144 0.92885 0.99891 0.99155 0.92928 0.93280 0.91227 0.88282 0.93767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.80 71.98 0.71 -0.89 16 2 C -0.12 -1.06 5.47 30.59 0.17 -0.90 16 3 C 0.14 2.15 2.57 44.99 0.12 2.27 16 4 H 0.06 1.25 7.58 -2.38 -0.02 1.24 16 5 C -0.16 -2.44 9.48 71.98 0.68 -1.75 16 6 N -0.71 -10.70 4.53 -442.53 -2.00 -12.70 16 7 C 0.51 11.99 7.47 87.66 0.65 12.64 16 8 O -0.57 -19.81 13.99 -3.03 -0.04 -19.86 16 9 C 0.04 0.74 5.45 85.56 0.47 1.21 16 10 N -0.54 -15.90 4.40 -900.93 -3.96 -19.87 16 11 C 0.07 2.35 5.10 86.33 0.44 2.79 16 12 C -0.09 -3.88 5.15 30.65 0.16 -3.72 16 13 C -0.07 -3.22 2.20 -10.71 -0.02 -3.24 16 14 C 0.03 1.87 4.45 29.85 0.13 2.00 16 15 C -0.53 -31.38 8.45 25.60 0.22 -31.17 16 16 H 0.06 3.36 7.08 -2.91 -0.02 3.34 16 17 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 18 N -0.94 -59.38 13.29 21.45 0.28 -59.09 16 19 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 23 C -0.11 -3.88 5.38 30.65 0.16 -3.71 16 24 C 0.07 1.84 5.46 86.33 0.47 2.31 16 25 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 26 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.41 3.17 8.60 -92.71 -0.80 2.38 16 34 H 0.13 1.75 7.99 -2.39 -0.02 1.73 16 35 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 36 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.07 2.72 5.78 -2.39 -0.01 2.70 16 38 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.05 2.30 7.06 -2.39 -0.02 2.29 16 40 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 41 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 44 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.10 2.05 8.01 -2.39 -0.02 2.03 16 47 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -76.97 367.38 1.23 -75.73 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.12 Total: 9.47 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.81 Total: -21.94 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -5.68 Total: -91.66 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.97 1.23 -75.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399312468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.960 kcal (2) G-P(sol) polarization free energy of solvation -76.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds