Wall clock time and date at job start Tue Mar 31 2020 06:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46991 * 2 1 4 4 H 1.08996 * 109.46884 * 305.00622 * 3 2 1 5 5 C 1.52997 * 109.47127 * 184.99870 * 3 2 1 6 6 N 1.46497 * 109.46631 * 65.00087 * 3 2 1 7 7 C 1.34784 * 120.00075 * 204.99770 * 6 3 2 8 8 O 1.21280 * 119.99396 * 0.02562 * 7 6 3 9 9 C 1.50699 * 120.00292 * 180.02562 * 7 6 3 10 10 N 1.46905 * 109.47077 * 180.02562 * 9 7 6 11 11 C 1.46843 * 110.99742 * 294.21056 * 10 9 7 12 12 C 1.53042 * 109.52178 * 174.15795 * 11 10 9 13 13 C 1.53123 * 109.27636 * 59.18069 * 12 11 10 14 14 C 1.53000 * 109.57502 * 182.40996 * 13 12 11 15 15 C 1.50699 * 109.47223 * 294.71376 * 14 13 12 16 16 H 1.08007 * 119.99796 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00284 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00271 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99815 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47208 * 90.00361 * 19 17 15 21 21 H 1.48504 * 109.47308 * 210.00428 * 19 17 15 22 22 H 1.48497 * 109.47195 * 330.00328 * 19 17 15 23 23 C 1.53123 * 109.15730 * 302.34532 * 13 12 11 24 24 C 1.46839 * 110.99743 * 169.99888 * 10 9 7 25 25 H 1.09006 * 109.47013 * 60.00029 * 1 2 3 26 26 H 1.09002 * 109.46810 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46933 * 299.99587 * 1 2 3 28 28 H 1.08996 * 109.46933 * 240.00413 * 2 1 3 29 29 H 1.09000 * 109.47335 * 120.00285 * 2 1 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 31 31 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 32 32 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 33 33 H 0.96996 * 120.00792 * 25.00239 * 6 3 2 34 34 H 1.08994 * 109.47030 * 299.99967 * 9 7 6 35 35 H 1.08993 * 109.47006 * 59.99994 * 9 7 6 36 36 H 1.08990 * 109.46616 * 294.17526 * 11 10 9 37 37 H 1.09002 * 109.46713 * 54.14800 * 11 10 9 38 38 H 1.09001 * 109.50505 * 299.24167 * 12 11 10 39 39 H 1.08997 * 109.50562 * 179.12010 * 12 11 10 40 40 H 1.08995 * 109.52434 * 62.24725 * 13 12 11 41 41 H 1.08998 * 109.46982 * 54.71260 * 14 13 12 42 42 H 1.09000 * 109.47010 * 174.71508 * 14 13 12 43 43 H 0.97000 * 120.00329 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.50306 * 297.71129 * 23 13 12 45 45 H 1.09006 * 109.50357 * 177.59387 * 23 13 12 46 46 H 1.08998 * 109.46787 * 305.85224 * 24 10 9 47 47 H 1.08998 * 109.46525 * 65.84038 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0974 1.2518 7 6 1.5256 3.4384 1.2997 8 8 1.7319 4.1028 0.3063 9 6 1.1274 4.1121 2.5876 10 7 1.0582 5.5647 2.3793 11 6 2.3863 6.1180 2.0854 12 6 2.2555 7.6013 1.7319 13 6 1.6202 8.3473 2.9086 14 6 1.4311 9.8201 2.5398 15 6 2.7786 10.4669 2.3481 16 1 3.6798 9.8855 2.4760 17 6 2.8611 11.8008 2.0094 18 7 4.0371 12.3652 1.8415 19 14 1.3025 12.8062 1.7874 20 1 0.9174 13.4155 3.0857 21 1 1.5433 13.8789 0.7892 22 1 0.2076 11.9233 1.3109 23 6 0.2596 7.7203 3.2253 24 6 0.4482 6.2336 3.5354 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9282 2.4721 -0.1252 31 1 3.8532 0.9571 -1.0571 32 1 3.9995 0.9054 0.7161 33 1 1.4871 1.5661 2.0463 34 1 0.1514 3.7439 2.9036 35 1 1.8663 3.8899 3.3574 36 1 3.0271 6.0083 2.9601 37 1 2.8252 5.5816 1.2442 38 1 1.6259 7.7109 0.8489 39 1 3.2431 8.0155 1.5291 40 1 2.2685 8.2706 3.7813 41 1 0.8585 9.8925 1.6152 42 1 0.8944 10.3291 3.3404 43 1 4.0952 13.3037 1.6036 44 1 -0.4014 7.8318 2.3658 45 1 -0.1789 8.2195 4.0894 46 1 -0.5206 5.7811 3.7474 47 1 1.0982 6.1235 4.4034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399312469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:04 Heat of formation + Delta-G solvation = -57.726022 kcal Electronic energy + Delta-G solvation = -22805.537798 eV Core-core repulsion = 19601.200495 eV Total energy + Delta-G solvation = -3204.337303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.13499 -38.42143 -36.54758 -34.40356 -32.64230 -32.14008 -30.33247 -30.25050 -28.97690 -26.42419 -24.15183 -23.20970 -22.64198 -21.26338 -20.57933 -20.33749 -18.92528 -17.13279 -16.63392 -16.54580 -15.57489 -15.32587 -14.51189 -14.38547 -14.24765 -14.17720 -13.90901 -13.71676 -13.47444 -13.09842 -12.84087 -12.65591 -12.56708 -12.15574 -12.05857 -11.82697 -11.74717 -11.52718 -11.45068 -11.30079 -11.01793 -10.80267 -10.63490 -10.47729 -10.15540 -9.84648 -9.57917 -9.45043 -9.22841 -9.09163 -8.91355 -8.44155 -8.07904 -5.95300 -3.91694 2.65528 2.94815 3.37209 3.44648 3.50109 4.13982 4.35425 4.53879 4.65067 4.71215 4.76370 5.09248 5.12763 5.17297 5.24813 5.28907 5.33815 5.38435 5.44899 5.45154 5.56279 5.57362 5.62086 5.74744 5.79785 5.86492 5.89897 6.00107 6.03300 6.15689 6.28630 6.40051 6.41592 6.59054 6.65517 6.94225 7.05971 7.17918 7.19219 7.34134 7.44810 7.45268 7.61262 7.90627 8.24977 8.64561 9.10300 9.68226 11.18269 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.003121 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.491122 B = 8970.508614 C = 9371.427637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.141 3.859 4 H 0.088 0.912 5 C -0.165 4.165 6 N -0.733 5.733 7 C 0.513 3.487 8 O -0.511 6.511 9 C 0.036 3.964 10 N -0.520 5.520 11 C 0.052 3.948 12 C -0.097 4.097 13 C -0.074 4.074 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.114 4.114 24 C 0.061 3.939 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.396 0.604 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.009 0.991 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -26.792 1.100 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.037 3.963 4 H 0.106 0.894 5 C -0.223 4.223 6 N -0.387 5.387 7 C 0.298 3.702 8 O -0.385 6.385 9 C -0.096 4.096 10 N -0.245 5.245 11 C -0.075 4.075 12 C -0.135 4.135 13 C -0.092 4.092 14 C -0.046 4.046 15 C -0.550 4.550 16 H 0.090 0.910 17 C -0.137 4.137 18 N -0.547 5.547 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.189 1.189 23 C -0.152 4.152 24 C -0.067 4.067 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.230 0.770 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.027 0.973 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.072 -26.021 -0.099 26.965 hybrid contribution -0.256 0.191 1.041 1.089 sum -7.328 -25.831 0.942 26.866 Atomic orbital electron populations 1.21775 0.95297 1.01564 1.02404 1.21832 0.96572 0.95530 1.02904 1.20959 0.94838 0.92815 0.87729 0.89385 1.22188 0.95464 1.02864 1.01777 1.46109 1.72075 1.07078 1.13424 1.20667 0.76841 0.81816 0.90846 1.90716 1.47923 1.63517 1.36327 1.21929 1.02271 0.91136 0.94222 1.61677 1.24163 1.00061 1.38571 1.22362 0.87527 0.97807 0.99795 1.21500 1.02215 0.91150 0.98616 1.21069 0.94012 0.96667 0.97485 1.19608 0.97671 0.91408 0.95927 1.21168 0.92297 0.95068 1.46443 0.90982 1.25032 0.95755 0.97884 0.94981 1.69920 1.23327 1.12337 1.49069 0.86796 0.84580 0.79999 0.78025 1.20494 1.21555 1.18945 1.21717 0.99357 0.92730 1.01354 1.22116 0.98075 0.96075 0.90431 0.92499 0.92667 0.92526 0.90499 0.91527 0.91837 0.91761 0.92643 0.77031 0.88355 0.92413 0.96009 0.89707 0.91800 0.90542 0.92547 0.96521 0.97275 0.92914 0.91520 0.92049 0.91559 0.95200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.80 37.16 0.36 -0.53 16 2 C -0.13 -0.73 5.47 -26.73 -0.15 -0.88 16 3 C 0.14 1.17 2.57 -67.93 -0.17 0.99 16 4 H 0.09 0.94 7.58 -51.93 -0.39 0.54 16 5 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 6 N -0.73 -6.18 4.53 -53.81 -0.24 -6.42 16 7 C 0.51 6.29 7.47 -10.98 -0.08 6.21 16 8 O -0.51 -8.64 13.99 5.56 0.08 -8.56 16 9 C 0.04 0.40 5.45 -4.97 -0.03 0.37 16 10 N -0.52 -7.86 4.40 -236.13 -1.04 -8.90 16 11 C 0.05 0.90 5.11 -3.83 -0.02 0.88 16 12 C -0.10 -1.97 5.15 -26.65 -0.14 -2.11 16 13 C -0.07 -1.51 2.20 -90.49 -0.20 -1.71 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.84 9.00 -34.44 -0.31 -15.15 16 16 H 0.07 2.23 7.32 -52.48 -0.38 1.85 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 19 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 23 C -0.11 -1.92 5.38 -26.65 -0.14 -2.07 16 24 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.34 7.75 -51.93 -0.40 -0.06 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.40 2.19 8.60 -40.82 -0.35 1.84 16 34 H 0.10 0.86 7.99 -51.93 -0.41 0.44 16 35 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 1.53 5.78 -51.93 -0.30 1.23 16 38 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.70 7.05 -51.93 -0.37 1.34 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 42 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -33.80 363.77 -9.24 -43.04 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.88 Total: -1.87 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.74 Total: -12.69 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.51 Total: -43.17 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.80 -9.24 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399312469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.691 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds