Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46899 * 2 1 4 4 H 1.09005 * 109.58354 * 59.63116 * 3 2 1 5 5 C 1.53184 * 109.70512 * 299.27529 * 3 2 1 6 6 C 1.53044 * 109.31490 * 185.50578 * 5 3 2 7 7 C 1.53048 * 109.53689 * 61.36663 * 6 5 3 8 8 C 1.53628 * 109.23740 * 298.51137 * 7 6 5 9 9 N 1.46921 * 108.54323 * 54.85878 * 8 7 6 10 10 C 1.34780 * 120.63369 * 126.36857 * 9 8 7 11 11 O 1.21278 * 120.00395 * 184.87842 * 10 9 8 12 12 C 1.50699 * 119.99676 * 4.87708 * 10 9 8 13 13 H 1.08999 * 109.46832 * 320.32382 * 12 10 9 14 14 C 1.52999 * 109.47291 * 80.32178 * 12 10 9 15 15 N 1.46501 * 109.46997 * 200.32784 * 12 10 9 16 16 C 1.36932 * 120.00262 * 114.13660 * 15 12 10 17 17 H 1.08007 * 120.00173 * 350.95238 * 16 15 12 18 18 C 1.38814 * 120.00195 * 170.94645 * 16 15 12 19 19 N 1.31619 * 119.99529 * 1.26129 * 18 16 15 20 20 Si 1.86801 * 120.00008 * 181.25773 * 18 16 15 21 21 H 1.48502 * 109.47276 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46975 * 120.00300 * 20 18 16 23 23 H 1.48495 * 109.46924 * 240.00223 * 20 18 16 24 24 C 1.46497 * 119.99679 * 294.13581 * 15 12 10 25 25 C 1.53004 * 109.46928 * 263.18079 * 24 15 12 26 26 H 1.08986 * 109.47419 * 305.40973 * 1 2 3 27 27 H 1.09000 * 109.46699 * 65.41380 * 1 2 3 28 28 H 1.09005 * 109.46855 * 185.40480 * 1 2 3 29 29 H 1.08996 * 109.47855 * 239.99807 * 2 1 3 30 30 H 1.08998 * 109.47123 * 119.99876 * 2 1 3 31 31 H 1.09005 * 109.50052 * 305.45779 * 5 3 2 32 32 H 1.09007 * 109.49821 * 65.55632 * 5 3 2 33 33 H 1.09000 * 109.45938 * 181.38501 * 6 5 3 34 34 H 1.08996 * 109.45990 * 301.35913 * 6 5 3 35 35 H 1.08999 * 109.49751 * 58.58270 * 7 6 5 36 36 H 1.08992 * 109.49288 * 178.68356 * 7 6 5 37 37 H 1.08999 * 109.73806 * 295.11670 * 8 7 6 38 38 H 1.09000 * 109.66187 * 174.54841 * 8 7 6 39 39 H 1.09005 * 109.46841 * 54.73075 * 14 12 10 40 40 H 1.09001 * 109.47083 * 174.72604 * 14 12 10 41 41 H 1.08996 * 109.47473 * 294.72884 * 14 12 10 42 42 H 0.97000 * 119.99560 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.47271 * 23.17782 * 24 15 12 44 44 H 1.09000 * 109.47289 * 143.18267 * 24 15 12 45 45 H 1.09001 * 109.47366 * 65.77773 * 25 24 15 46 46 H 1.09001 * 109.47143 * 185.78011 * 25 24 15 47 47 H 1.09001 * 109.47185 * 305.77115 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6722 1.9600 0.8861 5 6 1.5472 2.1645 -1.2579 6 6 2.1729 3.5599 -1.3186 7 6 3.6962 3.4347 -1.3989 8 6 4.2132 2.7277 -0.1368 9 7 3.5093 1.4456 0.0021 10 6 4.1981 0.2947 0.1346 11 8 3.6091 -0.7651 0.1596 12 6 5.7002 0.3250 0.2518 13 1 6.1025 1.0771 -0.4268 14 6 6.0928 0.6728 1.6891 15 7 6.2439 -0.9896 -0.0985 16 6 7.0216 -1.1331 -1.2164 17 1 7.1153 -0.3169 -1.9175 18 6 7.6898 -2.3275 -1.4484 19 7 7.5559 -3.3306 -0.6068 20 14 8.7786 -2.5112 -2.9551 21 1 8.7607 -1.2480 -3.7358 22 1 10.1694 -2.8086 -2.5274 23 1 8.2720 -3.6227 -3.7994 24 6 5.9555 -2.1505 0.7472 25 6 7.1180 -2.3773 1.7157 26 1 -0.3633 0.5954 0.8375 27 1 -0.3633 0.4276 -0.9345 28 1 -0.3633 -1.0232 0.0968 29 1 1.8935 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8388 1.5964 -2.1414 32 1 0.4613 2.2540 -1.2243 33 1 1.8048 4.0850 -2.2000 34 1 1.9015 4.1188 -0.4231 35 1 3.9675 2.8545 -2.2809 36 1 4.1397 4.4281 -1.4656 37 1 4.0191 3.3479 0.7382 38 1 5.2843 2.5482 -0.2298 39 1 5.6134 -0.0252 2.3757 40 1 7.1752 0.6031 1.7971 41 1 5.7694 1.6880 1.9186 42 1 8.0225 -4.1653 -0.7692 43 1 5.0414 -1.9699 1.3127 44 1 5.8269 -3.0333 0.1209 45 1 7.1818 -1.5390 2.4095 46 1 6.9516 -3.2988 2.2736 47 1 8.0488 -2.4558 1.1540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216160.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = 5.565112 kcal Electronic energy + Delta-G solvation = -24656.400074 eV Core-core repulsion = 21454.807280 eV Total energy + Delta-G solvation = -3201.592794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18307 -37.35366 -35.74457 -34.06578 -32.67546 -31.80206 -29.59711 -29.22844 -28.43101 -25.36742 -24.10145 -23.92457 -22.57386 -21.03217 -20.89345 -20.03151 -18.18598 -16.88765 -16.01457 -15.65818 -15.14645 -14.88724 -14.47272 -14.39964 -13.75505 -13.48390 -13.36248 -13.24310 -12.95540 -12.75322 -12.41626 -12.09340 -11.91297 -11.75912 -11.64085 -11.44521 -11.21004 -11.09592 -10.89460 -10.85015 -10.72038 -10.64283 -10.51067 -10.36847 -10.28920 -10.25178 -9.80822 -9.50218 -9.36310 -8.36003 -8.20592 -8.07036 -6.71578 -5.51883 -3.04370 3.36207 3.42744 3.45110 3.48052 3.49185 4.51167 4.74896 4.83571 4.86590 5.10287 5.22291 5.35285 5.38284 5.45055 5.51996 5.56555 5.57950 5.62497 5.75508 5.75774 5.85066 5.92382 5.96716 5.99747 6.04594 6.07496 6.12518 6.27877 6.30333 6.33168 6.52598 6.63849 6.76706 6.82030 6.95313 7.12881 7.21725 7.33575 7.49947 7.70254 7.95915 8.13875 8.33893 8.60456 9.00060 9.36697 9.95068 10.37586 11.37478 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018881 B = 0.005556 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.587343 B = 5037.981963 C = 5344.042324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C 0.148 3.852 4 H 0.060 0.940 5 C -0.132 4.132 6 C -0.117 4.117 7 C -0.137 4.137 8 C 0.109 3.891 9 N -0.621 5.621 10 C 0.494 3.506 11 O -0.518 6.518 12 C 0.158 3.842 13 H 0.079 0.921 14 C -0.150 4.150 15 N -0.575 5.575 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.007 4.007 19 N -0.901 5.901 20 Si 0.909 3.091 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.174 3.826 25 C -0.137 4.137 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.247 0.753 43 H 0.013 0.987 44 H 0.096 0.904 45 H 0.001 0.999 46 H 0.016 0.984 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 13.656 1.965 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.147 4.147 3 C 0.044 3.956 4 H 0.078 0.922 5 C -0.170 4.170 6 C -0.155 4.155 7 C -0.175 4.175 8 C -0.015 4.015 9 N -0.358 5.358 10 C 0.282 3.718 11 O -0.392 6.392 12 C 0.045 3.955 13 H 0.097 0.903 14 C -0.210 4.210 15 N -0.295 5.295 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.549 5.549 20 Si 0.740 3.260 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.050 3.950 25 C -0.196 4.196 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.114 0.886 45 H 0.020 0.980 46 H 0.035 0.965 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.810 12.843 1.941 16.277 hybrid contribution 0.526 0.048 -0.829 0.983 sum -9.284 12.891 1.112 15.925 Atomic orbital electron populations 1.22003 0.97695 1.01273 1.00709 1.22043 0.92818 0.94387 1.05466 1.21231 0.80434 0.97348 0.96545 0.92246 1.22035 1.00005 0.96041 0.98955 1.21497 0.95475 0.96957 1.01561 1.22010 0.96032 1.00591 0.98866 1.21788 0.97711 0.84896 0.97065 1.48530 1.05488 1.07100 1.74635 1.22863 0.91969 0.82677 0.74324 1.90648 1.69692 1.30345 1.48499 1.20280 0.88214 0.90973 0.96071 0.90284 1.22224 1.02370 0.99405 0.96986 1.44024 1.56013 1.01908 1.27540 1.19385 1.19824 0.99167 0.98781 0.91107 1.24812 1.00145 0.96720 0.98602 1.70320 1.45395 1.03726 1.35457 0.86090 0.80191 0.77456 0.82230 1.20692 1.21773 1.21878 1.20948 0.91689 0.90640 0.91759 1.22499 1.04308 0.95288 0.97513 0.93520 0.93318 0.92868 0.90585 0.89657 0.91569 0.91270 0.92140 0.92130 0.91336 0.91135 0.92051 0.89214 0.92707 0.91468 0.93769 0.94154 0.96880 0.88637 0.98046 0.96520 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.43 37.16 0.35 -1.62 16 2 C -0.11 -1.73 3.86 -26.73 -0.10 -1.84 16 3 C 0.15 2.06 3.00 -67.60 -0.20 1.86 16 4 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -1.55 4.88 -26.61 -0.13 -1.68 16 6 C -0.12 -1.16 5.88 -26.68 -0.16 -1.32 16 7 C -0.14 -1.45 6.10 -26.38 -0.16 -1.61 16 8 C 0.11 1.32 5.83 -3.49 -0.02 1.30 16 9 N -0.62 -9.63 2.97 -164.96 -0.49 -10.12 16 10 C 0.49 9.79 6.78 -10.98 -0.07 9.72 16 11 O -0.52 -11.91 9.86 5.56 0.05 -11.86 16 12 C 0.16 3.22 2.26 -69.08 -0.16 3.07 16 13 H 0.08 1.52 5.97 -51.93 -0.31 1.21 16 14 C -0.15 -2.67 7.86 37.16 0.29 -2.38 16 15 N -0.58 -14.54 2.31 -166.98 -0.39 -14.92 16 16 C -0.24 -6.59 9.75 -15.06 -0.15 -6.74 16 17 H 0.07 1.86 7.70 -52.48 -0.40 1.46 16 18 C -0.01 -0.19 5.20 -17.43 -0.09 -0.28 16 19 N -0.90 -25.70 7.27 55.49 0.40 -25.29 16 20 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.17 4.54 4.34 -4.04 -0.02 4.52 16 25 C -0.14 -3.39 9.12 37.16 0.34 -3.05 16 26 H 0.05 0.51 8.14 -51.94 -0.42 0.09 16 27 H 0.05 0.55 6.89 -51.93 -0.36 0.19 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.43 7.04 -51.93 -0.37 1.07 16 30 H 0.09 1.57 6.44 -51.93 -0.33 1.24 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.12 5.34 -51.93 -0.28 0.84 16 39 H 0.05 1.04 7.07 -51.93 -0.37 0.68 16 40 H 0.07 1.24 7.83 -51.93 -0.41 0.83 16 41 H 0.04 0.63 7.56 -51.93 -0.39 0.24 16 42 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.01 0.34 6.15 -51.93 -0.32 0.02 16 44 H 0.10 2.84 5.91 -51.93 -0.31 2.53 16 45 H 0.00 0.01 6.34 -51.93 -0.33 -0.32 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 2.27 6.04 -51.93 -0.31 1.96 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -30.05 340.50 -8.79 -38.84 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.21 Total: 1.38 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.28 Total: -0.06 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.47 Total: -50.33 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.05 Total: -11.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.05 -8.79 -38.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216160.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.405 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds