Wall clock time and date at job start Tue Mar 31 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47046 * 2 1 4 4 H 1.09001 * 109.70112 * 298.29358 * 3 2 1 5 5 C 1.53191 * 109.58437 * 58.64676 * 3 2 1 6 6 C 1.53042 * 109.31092 * 174.42075 * 5 3 2 7 7 C 1.53047 * 109.52613 * 298.64259 * 6 5 3 8 8 C 1.53163 * 109.32726 * 61.37370 * 7 6 5 9 9 N 1.46919 * 109.58522 * 177.93554 * 3 2 1 10 10 C 1.34778 * 120.63372 * 6.62764 * 9 3 2 11 11 O 1.21283 * 119.99929 * 5.42264 * 10 9 3 12 12 C 1.50696 * 120.00382 * 185.41831 * 10 9 3 13 13 H 1.09005 * 109.47327 * 321.63975 * 12 10 9 14 14 C 1.52995 * 109.47186 * 81.64026 * 12 10 9 15 15 N 1.46506 * 109.47282 * 201.64255 * 12 10 9 16 16 C 1.36940 * 119.99870 * 113.66569 * 15 12 10 17 17 H 1.08001 * 119.99914 * 349.50558 * 16 15 12 18 18 C 1.38812 * 119.99749 * 169.50507 * 16 15 12 19 19 N 1.31611 * 120.00213 * 1.84785 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 181.84335 * 18 16 15 21 21 H 1.48508 * 109.47069 * 89.99928 * 20 18 16 22 22 H 1.48497 * 109.47149 * 210.00351 * 20 18 16 23 23 H 1.48500 * 109.47378 * 330.00377 * 20 18 16 24 24 C 1.46490 * 119.99898 * 293.66327 * 15 12 10 25 25 C 1.53002 * 109.47492 * 264.56584 * 24 15 12 26 26 H 1.09007 * 109.47149 * 64.09021 * 1 2 3 27 27 H 1.09002 * 109.47163 * 184.08137 * 1 2 3 28 28 H 1.08999 * 109.47347 * 304.08763 * 1 2 3 29 29 H 1.09002 * 109.46858 * 240.00237 * 2 1 3 30 30 H 1.08993 * 109.47313 * 120.00629 * 2 1 3 31 31 H 1.08998 * 109.49532 * 54.47372 * 5 3 2 32 32 H 1.08997 * 109.49716 * 294.37457 * 5 3 2 33 33 H 1.08995 * 109.45977 * 58.65894 * 6 5 3 34 34 H 1.09004 * 109.46140 * 178.63120 * 6 5 3 35 35 H 1.09000 * 109.49399 * 181.30868 * 7 6 5 36 36 H 1.08995 * 109.49598 * 301.40646 * 7 6 5 37 37 H 1.08995 * 109.59057 * 185.57095 * 8 7 6 38 38 H 1.09006 * 109.70924 * 65.20869 * 8 7 6 39 39 H 1.09005 * 109.46900 * 54.27042 * 14 12 10 40 40 H 1.08999 * 109.47321 * 174.27121 * 14 12 10 41 41 H 1.08996 * 109.47439 * 294.26919 * 14 12 10 42 42 H 0.97003 * 120.00570 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47211 * 24.56826 * 24 15 12 44 44 H 1.09002 * 109.47141 * 144.56211 * 24 15 12 45 45 H 1.08997 * 109.47107 * 186.12448 * 25 24 15 46 46 H 1.09007 * 109.46696 * 306.11939 * 25 24 15 47 47 H 1.08994 * 109.47414 * 66.11866 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7039 1.9511 -0.9036 5 6 1.5031 2.1769 1.2325 6 6 2.1266 3.5729 1.3013 7 6 3.6460 3.4484 1.4365 8 6 4.2071 2.7287 0.2065 9 7 3.5083 1.4457 0.0499 10 6 4.2013 0.2938 -0.0467 11 8 3.6203 -0.7462 -0.2744 12 6 5.6981 0.2979 0.1282 13 1 6.1156 1.1918 -0.3352 14 6 6.0373 0.2910 1.6201 15 7 6.2673 -0.8930 -0.5076 16 6 7.0768 -0.7628 -1.6044 17 1 7.1610 0.1914 -2.1032 18 6 7.7890 -1.8574 -2.0752 19 7 7.6584 -3.0288 -1.4896 20 14 8.9327 -1.6677 -3.5398 21 1 10.2910 -1.3026 -3.0632 22 1 8.9979 -2.9497 -4.2863 23 1 8.4186 -0.5996 -4.4344 24 6 5.9706 -2.2229 0.0302 25 6 7.0925 -2.6519 0.9779 26 1 -0.3634 0.4491 -0.9244 27 1 -0.3633 -1.0251 0.0731 28 1 -0.3634 0.5759 0.8511 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7632 1.6177 2.1312 32 1 0.4192 2.2657 1.1597 33 1 1.8868 4.1229 0.3914 34 1 1.7278 4.1066 2.1640 35 1 4.0874 4.4424 1.5088 36 1 3.8858 2.8772 2.3333 37 1 5.2736 2.5497 0.3426 38 1 4.0498 3.3412 -0.6814 39 1 5.5354 -0.5476 2.1029 40 1 7.1152 0.1913 1.7472 41 1 5.7028 1.2242 2.0731 42 1 8.1564 -3.7936 -1.8183 43 1 5.0268 -2.1925 0.5746 44 1 5.8942 -2.9375 -0.7894 45 1 6.9279 -3.6823 1.2929 46 1 8.0508 -2.5779 0.4635 47 1 7.0983 -2.0011 1.8522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:33 Heat of formation + Delta-G solvation = 5.086842 kcal Electronic energy + Delta-G solvation = -24662.880275 eV Core-core repulsion = 21461.266742 eV Total energy + Delta-G solvation = -3201.613533 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.20106 -37.36737 -35.75857 -34.10132 -32.64822 -31.82521 -29.61697 -29.23364 -28.43987 -25.39630 -24.14562 -23.91599 -22.52135 -21.04206 -20.97219 -20.00614 -18.12701 -16.91949 -16.16136 -15.66305 -15.11014 -14.79166 -14.44120 -14.33032 -13.82368 -13.59199 -13.51683 -13.19093 -13.04974 -12.62419 -12.59465 -11.95041 -11.89262 -11.73923 -11.63692 -11.52335 -11.15493 -11.06909 -10.93985 -10.83766 -10.70456 -10.65517 -10.53993 -10.41232 -10.30799 -10.28008 -9.81905 -9.49817 -9.34523 -8.36343 -8.17982 -8.11501 -6.70717 -5.52101 -3.04854 3.37570 3.41164 3.44385 3.48539 3.49252 4.51592 4.72294 4.80591 4.85546 5.08083 5.21334 5.34384 5.37905 5.42810 5.51465 5.54696 5.59421 5.63713 5.72816 5.76994 5.83520 5.92503 5.93266 5.98529 6.01074 6.06263 6.08691 6.25442 6.28329 6.33491 6.52220 6.60895 6.76472 6.81917 6.95488 7.12972 7.21235 7.34039 7.48945 7.70581 7.96005 8.13610 8.32661 8.60707 9.00318 9.36806 9.95171 10.38031 11.37629 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021466 B = 0.005270 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.050152 B = 5312.142567 C = 5556.012987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C 0.148 3.852 4 H 0.060 0.940 5 C -0.131 4.131 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.108 3.892 9 N -0.621 5.621 10 C 0.496 3.504 11 O -0.519 6.519 12 C 0.158 3.842 13 H 0.079 0.921 14 C -0.150 4.150 15 N -0.575 5.575 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.006 4.006 19 N -0.901 5.901 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.172 3.828 25 C -0.137 4.137 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.248 0.752 43 H 0.014 0.986 44 H 0.096 0.904 45 H 0.016 0.984 46 H 0.081 0.919 47 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 12.521 6.570 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.152 4.152 3 C 0.044 3.956 4 H 0.078 0.922 5 C -0.170 4.170 6 C -0.156 4.156 7 C -0.173 4.173 8 C -0.016 4.016 9 N -0.358 5.358 10 C 0.283 3.717 11 O -0.393 6.393 12 C 0.045 3.955 13 H 0.096 0.904 14 C -0.209 4.209 15 N -0.295 5.295 16 C -0.374 4.374 17 H 0.088 0.912 18 C -0.202 4.202 19 N -0.549 5.549 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.209 1.209 24 C 0.048 3.952 25 C -0.196 4.196 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.114 0.886 45 H 0.035 0.965 46 H 0.100 0.900 47 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -10.132 11.726 6.347 16.747 hybrid contribution 0.566 0.258 -0.700 0.936 sum -9.567 11.984 5.647 16.341 Atomic orbital electron populations 1.22014 0.97556 1.01314 1.00823 1.22062 0.93025 0.94535 1.05530 1.21191 0.80411 0.97313 0.96685 0.92208 1.22044 0.99975 0.95976 0.98961 1.21506 0.95493 0.96966 1.01615 1.21923 0.95981 1.00531 0.98873 1.21693 0.97664 0.84904 0.97324 1.48518 1.05533 1.06981 1.74720 1.22875 0.91791 0.82405 0.74597 1.90621 1.69932 1.32037 1.46693 1.20269 0.88199 0.93065 0.94000 0.90355 1.22230 1.02434 1.00282 0.95966 1.44011 1.53693 1.00099 1.31668 1.19339 1.17634 0.96279 1.04102 0.91176 1.24820 0.99831 0.96014 0.99501 1.70291 1.43857 0.99709 1.41024 0.86162 0.80866 0.76817 0.82099 1.21650 1.21759 1.20872 1.20952 0.91627 0.85839 0.96745 1.22486 1.04435 0.95877 0.96835 0.93395 0.92882 0.93248 0.88636 0.91458 0.91693 0.91143 0.92062 0.92130 0.91115 0.91436 0.89181 0.92073 0.92723 0.91449 0.93773 0.94084 0.96787 0.88590 0.96490 0.90018 0.97969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.65 37.16 0.36 -1.60 16 2 C -0.11 -1.79 3.90 -26.73 -0.10 -1.89 16 3 C 0.15 2.06 3.03 -67.60 -0.21 1.85 16 4 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 5 C -0.13 -1.45 4.81 -26.61 -0.13 -1.58 16 6 C -0.12 -1.11 5.89 -26.69 -0.16 -1.27 16 7 C -0.13 -1.33 6.08 -26.62 -0.16 -1.49 16 8 C 0.11 1.32 6.06 -3.72 -0.02 1.29 16 9 N -0.62 -9.66 2.97 -165.24 -0.49 -10.15 16 10 C 0.50 9.84 6.71 -10.99 -0.07 9.77 16 11 O -0.52 -11.95 10.01 5.56 0.06 -11.89 16 12 C 0.16 3.23 2.24 -69.08 -0.16 3.08 16 13 H 0.08 1.51 6.12 -51.93 -0.32 1.19 16 14 C -0.15 -2.67 7.77 37.16 0.29 -2.38 16 15 N -0.58 -14.55 2.32 -166.98 -0.39 -14.94 16 16 C -0.24 -6.65 9.75 -15.06 -0.15 -6.80 16 17 H 0.07 1.84 7.71 -52.49 -0.40 1.44 16 18 C -0.01 -0.16 5.23 -17.43 -0.09 -0.25 16 19 N -0.90 -25.67 7.31 55.49 0.41 -25.27 16 20 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 4.50 4.38 -4.05 -0.02 4.49 16 25 C -0.14 -3.39 9.10 37.16 0.34 -3.05 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.53 6.32 -51.93 -0.33 0.20 16 29 H 0.10 1.83 6.26 -51.93 -0.32 1.50 16 30 H 0.07 1.19 7.22 -51.93 -0.37 0.82 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.69 6.65 -51.93 -0.35 0.34 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.11 5.01 -51.93 -0.26 0.85 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 1.04 7.05 -51.93 -0.37 0.68 16 40 H 0.07 1.25 7.77 -51.93 -0.40 0.85 16 41 H 0.04 0.63 7.48 -51.93 -0.39 0.25 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.01 0.36 6.14 -51.93 -0.32 0.04 16 44 H 0.10 2.85 5.90 -51.93 -0.31 2.55 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 2.23 6.11 -51.92 -0.32 1.91 16 47 H 0.00 0.03 6.17 -51.93 -0.32 -0.29 16 LS Contribution 339.73 15.07 5.12 5.12 Total: -1.00 -30.04 339.73 -8.74 -38.78 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.14 Total: 1.31 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.28 Total: 0.17 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.47 Total: -50.36 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.06 Total: -11.89 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.04 -8.74 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.866 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds