Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 H 1.08997 * 109.58590 * 60.81070 * 3 2 1 5 5 C 1.53185 * 109.70707 * 300.45062 * 3 2 1 6 6 C 1.53041 * 109.31377 * 185.50409 * 5 3 2 7 7 C 1.53041 * 109.53728 * 61.36891 * 6 5 3 8 8 C 1.53195 * 109.31213 * 298.63657 * 7 6 5 9 9 N 1.46916 * 108.77641 * 54.63065 * 8 7 6 10 10 C 1.34786 * 120.63131 * 126.41700 * 9 8 7 11 11 O 1.21274 * 120.00401 * 176.86723 * 10 9 8 12 12 C 1.50702 * 119.99486 * 356.86382 * 10 9 8 13 13 H 1.08996 * 109.47434 * 54.29152 * 12 10 9 14 14 C 1.53000 * 109.47176 * 294.28773 * 12 10 9 15 15 N 1.46501 * 109.46675 * 174.29253 * 12 10 9 16 16 C 1.36943 * 119.99701 * 243.90280 * 15 12 10 17 17 H 1.07998 * 119.99899 * 140.51578 * 16 15 12 18 18 C 1.38811 * 119.99810 * 320.50649 * 16 15 12 19 19 N 1.31616 * 120.00193 * 351.37700 * 18 16 15 20 20 Si 1.86804 * 119.99908 * 171.36964 * 18 16 15 21 21 H 1.48498 * 109.46550 * 60.00379 * 20 18 16 22 22 H 1.48503 * 109.47201 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47051 * 300.00630 * 20 18 16 24 24 C 1.46495 * 120.00118 * 63.90369 * 15 12 10 25 25 C 1.52993 * 109.47279 * 95.46693 * 24 15 12 26 26 H 1.08997 * 109.46911 * 305.81484 * 1 2 3 27 27 H 1.08997 * 109.47401 * 65.81376 * 1 2 3 28 28 H 1.09000 * 109.47245 * 185.81943 * 1 2 3 29 29 H 1.09006 * 109.46705 * 240.00631 * 2 1 3 30 30 H 1.08998 * 109.47772 * 120.00791 * 2 1 3 31 31 H 1.09000 * 109.49910 * 305.46140 * 5 3 2 32 32 H 1.09006 * 109.49776 * 65.55402 * 5 3 2 33 33 H 1.09007 * 109.45758 * 181.38686 * 6 5 3 34 34 H 1.08990 * 109.46510 * 301.36265 * 6 5 3 35 35 H 1.09003 * 109.49970 * 178.67749 * 7 6 5 36 36 H 1.09008 * 109.49848 * 58.58451 * 7 6 5 37 37 H 1.09003 * 109.58207 * 294.84183 * 8 7 6 38 38 H 1.08999 * 109.58360 * 174.42460 * 8 7 6 39 39 H 1.08998 * 109.47278 * 305.60180 * 14 12 10 40 40 H 1.09002 * 109.47106 * 65.60248 * 14 12 10 41 41 H 1.08996 * 109.47219 * 185.59792 * 14 12 10 42 42 H 0.97010 * 120.00193 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.46930 * 215.46343 * 24 15 12 44 44 H 1.08999 * 109.47546 * 335.46552 * 24 15 12 45 45 H 1.08999 * 109.47283 * 299.99791 * 25 24 15 46 46 H 1.09000 * 109.47524 * 59.99987 * 25 24 15 47 47 H 1.09000 * 109.47327 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6896 1.9539 0.8965 5 6 1.5231 2.1731 -1.2432 6 6 2.1477 3.5688 -1.3063 7 6 3.6690 3.4442 -1.4170 8 6 4.2103 2.7279 -0.1757 9 7 3.5091 1.4456 -0.0263 10 6 4.2002 0.2938 0.0849 11 8 3.6121 -0.7515 0.2647 12 6 5.7039 0.3049 -0.0142 13 1 6.1104 1.0137 0.7071 14 6 6.1189 0.7204 -1.4270 15 7 6.2221 -1.0351 0.2727 16 6 7.0175 -1.2415 1.3682 17 1 6.9017 -2.1387 1.9582 18 6 7.9726 -0.2978 1.7201 19 7 8.2322 0.7086 0.9125 20 14 8.8894 -0.4560 3.3400 21 1 9.6300 -1.7429 3.3658 22 1 9.8477 0.6700 3.4784 23 1 7.9191 -0.4206 4.4634 24 6 5.8893 -2.1541 -0.6123 25 6 7.0118 -2.3477 -1.6338 26 1 -0.3633 0.6013 0.8333 27 1 -0.3634 0.4210 -0.9374 28 1 -0.3634 -1.0224 0.1042 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.7974 1.6110 -2.1359 32 1 0.4381 2.2623 -1.1880 33 1 1.7626 4.1000 -2.1768 34 1 1.8937 4.1216 -0.4020 35 1 4.1115 4.4381 -1.4855 36 1 3.9232 2.8701 -2.3081 37 1 4.0369 3.3442 0.7065 38 1 5.2789 2.5485 -0.2943 39 1 5.6318 0.0710 -2.1545 40 1 5.8198 1.7534 -1.6045 41 1 7.2005 0.6328 -1.5286 42 1 8.8995 1.3683 1.1587 43 1 5.7750 -3.0630 -0.0215 44 1 4.9565 -1.9400 -1.1338 45 1 7.1262 -1.4389 -2.2246 46 1 7.9447 -2.5619 -1.1123 47 1 6.7644 -3.1806 -2.2920 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = -11.743433 kcal Electronic energy + Delta-G solvation = -24873.589076 eV Core-core repulsion = 21671.245727 eV Total energy + Delta-G solvation = -3202.343349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.07634 -37.19971 -35.65537 -33.93965 -32.48779 -31.75491 -30.33807 -29.13662 -28.18114 -25.26044 -24.04623 -23.87568 -22.43027 -21.11392 -20.82707 -20.00143 -18.20833 -16.79434 -16.08264 -15.46917 -14.79353 -14.54251 -14.37358 -14.33594 -13.89246 -13.61727 -13.45449 -13.11499 -13.03537 -12.66052 -12.49648 -12.19909 -11.76448 -11.68150 -11.50101 -11.44292 -11.19221 -11.07106 -10.90585 -10.86012 -10.77777 -10.64473 -10.46909 -10.30045 -10.25041 -10.16460 -10.06826 -9.71857 -9.53051 -8.51820 -8.10635 -7.97024 -6.46621 -5.82935 -3.37668 3.36809 3.41706 3.44949 3.58266 3.63191 4.48326 4.85452 4.93726 4.98313 5.22057 5.30210 5.38277 5.47856 5.51144 5.53908 5.65467 5.71987 5.78297 5.87579 5.88961 6.00120 6.04841 6.07978 6.15631 6.19105 6.30473 6.31511 6.35384 6.41362 6.49264 6.58940 6.67840 6.70139 6.72577 6.81827 6.91934 7.15659 7.21835 7.29797 7.42200 7.47026 7.82845 8.14122 8.55968 9.07703 9.28585 9.82155 10.42379 11.23362 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.006017 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.453948 B = 4652.687029 C = 4974.176736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C 0.146 3.854 4 H 0.058 0.942 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.101 3.899 9 N -0.619 5.619 10 C 0.492 3.508 11 O -0.536 6.536 12 C 0.174 3.826 13 H 0.118 0.882 14 C -0.143 4.143 15 N -0.562 5.562 16 C -0.250 4.250 17 H 0.060 0.940 18 C 0.012 3.988 19 N -0.900 5.900 20 Si 0.903 3.097 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.152 3.848 25 C -0.166 4.166 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.255 0.745 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.047 0.953 46 H 0.052 0.948 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.525 6.482 -5.308 13.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.149 4.149 3 C 0.042 3.958 4 H 0.076 0.924 5 C -0.168 4.168 6 C -0.155 4.155 7 C -0.173 4.173 8 C -0.022 4.022 9 N -0.355 5.355 10 C 0.282 3.718 11 O -0.412 6.412 12 C 0.062 3.938 13 H 0.135 0.865 14 C -0.201 4.201 15 N -0.281 5.281 16 C -0.381 4.381 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.026 3.974 25 C -0.225 4.225 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.675 5.999 -5.174 13.293 hybrid contribution 0.486 0.221 0.802 0.964 sum -10.190 6.220 -4.371 12.713 Atomic orbital electron populations 1.22000 0.97781 1.01136 1.00705 1.22059 0.92738 0.94647 1.05442 1.21207 0.80851 0.97155 0.96557 0.92376 1.22016 0.99822 0.96074 0.98902 1.21504 0.95675 0.96875 1.01486 1.21930 0.95750 1.00588 0.99037 1.21873 0.98823 0.84668 0.96885 1.48487 1.05203 1.07292 1.74514 1.23241 0.92707 0.82217 0.73673 1.90559 1.70317 1.31847 1.48474 1.20282 0.84663 0.91195 0.97642 0.86480 1.22229 1.03452 0.98242 0.96218 1.43416 1.54743 1.02745 1.27227 1.19085 1.09878 1.06291 1.02815 0.92248 1.25299 0.96424 0.98748 0.98241 1.69883 1.34367 1.14639 1.35416 0.86380 0.79447 0.77264 0.83701 1.20732 1.21562 1.20983 1.20739 0.94419 0.91023 0.91191 1.22392 1.01620 0.99188 0.99309 0.93440 0.93428 0.93002 0.91432 0.88793 0.91779 0.91384 0.92249 0.92142 0.91158 0.91461 0.92388 0.87735 0.95032 0.93842 0.90117 0.93482 0.94660 0.93860 0.93416 0.92924 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.38 37.16 0.35 -1.65 16 2 C -0.11 -1.80 3.89 -26.73 -0.10 -1.90 16 3 C 0.15 2.19 3.02 -67.60 -0.20 1.99 16 4 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 5 C -0.13 -1.58 4.85 -26.61 -0.13 -1.71 16 6 C -0.12 -1.28 5.88 -26.69 -0.16 -1.43 16 7 C -0.13 -1.60 5.89 -26.61 -0.16 -1.76 16 8 C 0.10 1.48 5.58 -3.71 -0.02 1.46 16 9 N -0.62 -10.66 2.97 -165.23 -0.49 -11.15 16 10 C 0.49 10.44 6.70 -10.98 -0.07 10.37 16 11 O -0.54 -12.44 10.18 5.56 0.06 -12.38 16 12 C 0.17 3.94 1.32 -69.08 -0.09 3.85 16 13 H 0.12 2.94 5.41 -51.93 -0.28 2.66 16 14 C -0.14 -2.89 7.41 37.16 0.28 -2.61 16 15 N -0.56 -14.16 2.12 -166.99 -0.35 -14.52 16 16 C -0.25 -6.86 9.50 -15.06 -0.14 -7.00 16 17 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 18 C 0.01 0.32 5.04 -17.43 -0.09 0.23 16 19 N -0.90 -24.05 10.84 55.49 0.60 -23.45 16 20 Si 0.90 21.32 29.56 -169.99 -5.03 16.30 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 C 0.15 3.50 5.06 -4.05 -0.02 3.48 16 25 C -0.17 -3.47 10.03 37.15 0.37 -3.09 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.54 6.90 -51.93 -0.36 0.18 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.22 7.21 -51.93 -0.37 0.85 16 30 H 0.09 1.81 6.26 -51.93 -0.32 1.49 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.72 6.90 -51.93 -0.36 0.37 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.85 7.90 -51.92 -0.41 0.44 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.70 4.20 -51.93 -0.22 1.49 16 39 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 40 H 0.04 0.76 5.12 -51.93 -0.27 0.49 16 41 H 0.08 1.83 7.40 -51.93 -0.38 1.45 16 42 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 43 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 44 H 0.04 0.99 6.52 -51.93 -0.34 0.65 16 45 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 46 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -28.39 343.19 -8.42 -36.81 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.19 Total: 2.99 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.19 Total: 0.22 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.24 Total: -49.11 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.06 Total: -12.38 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.39 -8.42 -36.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.071 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds