Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47050 * 2 1 4 4 H 1.09000 * 109.58297 * 298.33492 * 3 2 1 5 5 C 1.53196 * 109.58804 * 58.61370 * 3 2 1 6 6 C 1.53036 * 109.31145 * 174.42538 * 5 3 2 7 7 C 1.53041 * 109.52705 * 298.64026 * 6 5 3 8 8 C 1.53167 * 109.32495 * 61.37294 * 7 6 5 9 9 N 1.46917 * 108.77112 * 305.35762 * 8 7 6 10 10 C 1.34779 * 120.62783 * 233.58634 * 9 8 7 11 11 O 1.21281 * 119.99917 * 186.12763 * 10 9 8 12 12 C 1.50698 * 120.00170 * 6.13639 * 10 9 8 13 13 H 1.08997 * 109.47236 * 40.09068 * 12 10 9 14 14 C 1.53001 * 109.46665 * 280.09411 * 12 10 9 15 15 N 1.46503 * 109.46976 * 160.09534 * 12 10 9 16 16 C 1.36938 * 119.99686 * 246.43235 * 15 12 10 17 17 H 1.08003 * 119.99930 * 144.70730 * 16 15 12 18 18 C 1.38811 * 120.00021 * 324.70451 * 16 15 12 19 19 N 1.31613 * 120.00362 * 353.70830 * 18 16 15 20 20 Si 1.86804 * 119.99739 * 173.70154 * 18 16 15 21 21 H 1.48510 * 109.46822 * 90.00313 * 20 18 16 22 22 H 1.48501 * 109.47118 * 209.99994 * 20 18 16 23 23 H 1.48501 * 109.47337 * 330.00359 * 20 18 16 24 24 C 1.46497 * 120.00239 * 66.43960 * 15 12 10 25 25 C 1.53004 * 109.47519 * 95.64902 * 24 15 12 26 26 H 1.09007 * 109.47156 * 63.39668 * 1 2 3 27 27 H 1.09002 * 109.46943 * 183.39472 * 1 2 3 28 28 H 1.09000 * 109.47740 * 303.39725 * 1 2 3 29 29 H 1.08994 * 109.47653 * 239.99777 * 2 1 3 30 30 H 1.09002 * 109.47145 * 119.99034 * 2 1 3 31 31 H 1.08998 * 109.49060 * 54.47436 * 5 3 2 32 32 H 1.09003 * 109.49703 * 294.37640 * 5 3 2 33 33 H 1.08993 * 109.46323 * 58.65422 * 6 5 3 34 34 H 1.08996 * 109.45801 * 178.63218 * 6 5 3 35 35 H 1.08997 * 109.49941 * 181.30814 * 7 6 5 36 36 H 1.08992 * 109.50205 * 301.40901 * 7 6 5 37 37 H 1.09006 * 109.59079 * 185.56474 * 8 7 6 38 38 H 1.09003 * 109.70652 * 65.21525 * 8 7 6 39 39 H 1.08997 * 109.47261 * 65.47364 * 14 12 10 40 40 H 1.09003 * 109.47144 * 185.47065 * 14 12 10 41 41 H 1.08999 * 109.47178 * 305.46344 * 14 12 10 42 42 H 0.97001 * 120.00154 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47202 * 215.65437 * 24 15 12 44 44 H 1.09002 * 109.46779 * 335.65153 * 24 15 12 45 45 H 1.08998 * 109.46960 * 300.00142 * 25 24 15 46 46 H 1.08999 * 109.46715 * 59.99822 * 25 24 15 47 47 H 1.08998 * 109.47087 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7022 1.9495 -0.9039 5 6 1.5025 2.1773 1.2321 6 6 2.1258 3.5733 1.3008 7 6 3.6451 3.4489 1.4369 8 6 4.2068 2.7289 0.2073 9 7 3.5083 1.4459 0.0505 10 6 4.2013 0.2940 -0.0454 11 8 3.6220 -0.7441 -0.2855 12 6 5.6962 0.2957 0.1458 13 1 5.9572 0.9688 0.9624 14 6 6.3743 0.7688 -1.1416 15 7 6.1490 -1.0601 0.4665 16 6 6.6720 -1.3328 1.7023 17 1 6.4885 -2.2903 2.1671 18 6 7.4382 -0.3787 2.3577 19 7 7.7658 0.7380 1.7430 20 14 8.0040 -0.6796 4.1124 21 1 9.3208 -1.3661 4.0970 22 1 8.1312 0.6192 4.8210 23 1 7.0100 -1.5310 4.8140 24 6 6.0425 -2.1241 -0.5349 25 6 7.3742 -2.2629 -1.2753 26 1 -0.3634 0.4602 -0.9189 27 1 -0.3633 -1.0259 0.0609 28 1 -0.3634 0.5656 0.8579 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.7621 1.6182 2.1310 32 1 0.4185 2.2661 1.1587 33 1 1.8866 4.1231 0.3906 34 1 1.7266 4.1072 2.1632 35 1 4.0865 4.4429 1.5091 36 1 3.8846 2.8780 2.3338 37 1 5.2734 2.5500 0.3440 38 1 4.0501 3.3412 -0.6808 39 1 6.1135 1.8106 -1.3279 40 1 7.4555 0.6781 -1.0372 41 1 6.0372 0.1548 -1.9767 42 1 8.3008 1.4049 2.2011 43 1 5.8016 -3.0654 -0.0407 44 1 5.2553 -1.8756 -1.2466 45 1 7.6150 -1.3217 -1.7695 46 1 8.1614 -2.5114 -0.5635 47 1 7.2948 -3.0543 -2.0206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = -14.311920 kcal Electronic energy + Delta-G solvation = -24915.293978 eV Core-core repulsion = 21712.839251 eV Total energy + Delta-G solvation = -3202.454727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99403 -37.21068 -35.61439 -33.86931 -32.43184 -31.79432 -30.28991 -29.07085 -28.22207 -25.18331 -24.08654 -23.84604 -22.53919 -21.00233 -20.74355 -19.91763 -18.23452 -16.83239 -16.00365 -15.49223 -14.73445 -14.53259 -14.34738 -14.23120 -13.84760 -13.56253 -13.32859 -13.18954 -12.98194 -12.61793 -12.41133 -12.18059 -11.86687 -11.66903 -11.53602 -11.34676 -11.21924 -11.03000 -10.90317 -10.85728 -10.68883 -10.60995 -10.38706 -10.36251 -10.23218 -10.15102 -10.05265 -9.73916 -9.51438 -8.54954 -8.10584 -7.94491 -6.52498 -5.81424 -3.36348 3.33655 3.41112 3.44490 3.59523 3.69437 4.46916 4.91125 5.00472 5.05704 5.28894 5.33568 5.40661 5.50508 5.52909 5.57426 5.71355 5.76430 5.84376 5.90386 5.91710 6.06832 6.10789 6.16315 6.25031 6.26270 6.30744 6.34590 6.38664 6.49876 6.52741 6.59454 6.66987 6.71396 6.73500 6.84485 6.93508 7.14617 7.26886 7.35549 7.39343 7.50752 7.78578 8.18633 8.52034 9.09688 9.28536 9.81902 10.38460 11.21825 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.006924 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.919831 B = 4043.028573 C = 4714.727443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C 0.147 3.853 4 H 0.058 0.942 5 C -0.132 4.132 6 C -0.117 4.117 7 C -0.136 4.136 8 C 0.107 3.893 9 N -0.618 5.618 10 C 0.496 3.504 11 O -0.542 6.542 12 C 0.159 3.841 13 H 0.139 0.861 14 C -0.136 4.136 15 N -0.565 5.565 16 C -0.243 4.243 17 H 0.063 0.937 18 C 0.005 3.995 19 N -0.904 5.904 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.147 3.853 25 C -0.166 4.166 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.255 0.745 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.050 0.950 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.244 6.498 -3.614 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C 0.043 3.957 4 H 0.076 0.924 5 C -0.170 4.170 6 C -0.155 4.155 7 C -0.174 4.174 8 C -0.016 4.016 9 N -0.354 5.354 10 C 0.285 3.715 11 O -0.419 6.419 12 C 0.048 3.952 13 H 0.155 0.845 14 C -0.195 4.195 15 N -0.284 5.284 16 C -0.373 4.373 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.226 4.226 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.423 6.016 -3.666 11.765 hybrid contribution 0.302 0.105 1.028 1.077 sum -9.121 6.121 -2.638 11.297 Atomic orbital electron populations 1.22017 0.97772 1.01143 1.00761 1.22055 0.92767 0.94722 1.05481 1.21171 0.80880 0.97115 0.96525 0.92438 1.22045 0.99689 0.96158 0.99142 1.21500 0.95812 0.96801 1.01349 1.21912 0.95495 1.00622 0.99391 1.21750 0.98614 0.84485 0.96773 1.48498 1.05245 1.07268 1.74432 1.23285 0.92725 0.81971 0.73527 1.90529 1.70828 1.32315 1.48232 1.20599 0.84264 0.90963 0.99374 0.84451 1.22055 1.02727 0.98068 0.96671 1.43540 1.69193 1.04308 1.11340 1.19224 1.23562 1.01179 0.93305 0.91922 1.25199 0.97218 0.97879 0.98963 1.69756 1.40108 1.08843 1.36189 0.86266 0.78846 0.77128 0.84398 1.21258 1.21571 1.20533 1.20821 0.94037 0.91668 0.91339 1.22400 1.01310 0.99515 0.99340 0.93531 0.93036 0.93224 0.88896 0.91298 0.91616 0.91365 0.92258 0.92270 0.91216 0.91233 0.88070 0.92475 0.94360 0.90687 0.94885 0.93474 0.94783 0.93040 0.93407 0.93055 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.63 37.16 0.36 -1.71 16 2 C -0.11 -1.87 3.90 -26.73 -0.10 -1.98 16 3 C 0.15 2.27 3.03 -67.60 -0.21 2.06 16 4 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 5 C -0.13 -1.75 4.80 -26.61 -0.13 -1.88 16 6 C -0.12 -1.39 5.88 -26.69 -0.16 -1.55 16 7 C -0.14 -1.83 6.08 -26.62 -0.16 -1.99 16 8 C 0.11 1.64 5.63 -3.73 -0.02 1.61 16 9 N -0.62 -10.95 2.97 -165.24 -0.49 -11.44 16 10 C 0.50 10.63 6.71 -10.99 -0.07 10.56 16 11 O -0.54 -12.59 10.07 5.56 0.06 -12.53 16 12 C 0.16 3.63 1.35 -69.08 -0.09 3.54 16 13 H 0.14 3.42 4.17 -51.93 -0.22 3.20 16 14 C -0.14 -2.80 7.63 37.16 0.28 -2.52 16 15 N -0.56 -14.20 2.25 -166.98 -0.38 -14.58 16 16 C -0.24 -6.59 9.57 -15.06 -0.14 -6.74 16 17 H 0.06 1.73 7.84 -52.48 -0.41 1.32 16 18 C 0.01 0.14 5.15 -17.43 -0.09 0.05 16 19 N -0.90 -23.92 10.78 55.49 0.60 -23.32 16 20 Si 0.90 21.23 29.56 -169.99 -5.02 16.21 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.15 3.38 5.07 -4.04 -0.02 3.36 16 25 C -0.17 -3.45 10.03 37.16 0.37 -3.08 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 29 H 0.09 1.76 6.24 -51.93 -0.32 1.44 16 30 H 0.07 1.35 7.24 -51.93 -0.38 0.97 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.78 6.66 -51.93 -0.35 0.43 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.73 4.79 -51.93 -0.25 1.48 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.68 6.65 -51.93 -0.35 0.34 16 40 H 0.07 1.69 7.62 -51.93 -0.40 1.29 16 41 H 0.03 0.66 7.12 -51.93 -0.37 0.29 16 42 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 43 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 44 H 0.05 1.18 6.19 -51.93 -0.32 0.86 16 45 H 0.05 0.99 6.02 -51.93 -0.31 0.68 16 46 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -28.14 344.29 -8.44 -36.57 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.20 Total: 4.16 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.18 Total: -0.26 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.27 Total: -49.33 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.06 Total: -12.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.14 -8.44 -36.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.260 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds