Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47050 * 2 1 4 4 H 1.09000 * 109.58297 * 298.33492 * 3 2 1 5 5 C 1.53196 * 109.58804 * 58.61370 * 3 2 1 6 6 C 1.53036 * 109.31145 * 174.42538 * 5 3 2 7 7 C 1.53041 * 109.52705 * 298.64026 * 6 5 3 8 8 C 1.53167 * 109.32495 * 61.37294 * 7 6 5 9 9 N 1.46917 * 108.77112 * 305.35762 * 8 7 6 10 10 C 1.34779 * 120.62783 * 233.58634 * 9 8 7 11 11 O 1.21281 * 119.99917 * 186.12763 * 10 9 8 12 12 C 1.50698 * 120.00170 * 6.13639 * 10 9 8 13 13 H 1.08997 * 109.47236 * 40.09068 * 12 10 9 14 14 C 1.53001 * 109.46665 * 280.09411 * 12 10 9 15 15 N 1.46503 * 109.46976 * 160.09534 * 12 10 9 16 16 C 1.36938 * 119.99686 * 246.43235 * 15 12 10 17 17 H 1.08003 * 119.99930 * 144.70730 * 16 15 12 18 18 C 1.38811 * 120.00021 * 324.70451 * 16 15 12 19 19 N 1.31613 * 120.00362 * 353.70830 * 18 16 15 20 20 Si 1.86804 * 119.99739 * 173.70154 * 18 16 15 21 21 H 1.48510 * 109.46822 * 90.00313 * 20 18 16 22 22 H 1.48501 * 109.47118 * 209.99994 * 20 18 16 23 23 H 1.48501 * 109.47337 * 330.00359 * 20 18 16 24 24 C 1.46497 * 120.00239 * 66.43960 * 15 12 10 25 25 C 1.53004 * 109.47519 * 95.64902 * 24 15 12 26 26 H 1.09007 * 109.47156 * 63.39668 * 1 2 3 27 27 H 1.09002 * 109.46943 * 183.39472 * 1 2 3 28 28 H 1.09000 * 109.47740 * 303.39725 * 1 2 3 29 29 H 1.08994 * 109.47653 * 239.99777 * 2 1 3 30 30 H 1.09002 * 109.47145 * 119.99034 * 2 1 3 31 31 H 1.08998 * 109.49060 * 54.47436 * 5 3 2 32 32 H 1.09003 * 109.49703 * 294.37640 * 5 3 2 33 33 H 1.08993 * 109.46323 * 58.65422 * 6 5 3 34 34 H 1.08996 * 109.45801 * 178.63218 * 6 5 3 35 35 H 1.08997 * 109.49941 * 181.30814 * 7 6 5 36 36 H 1.08992 * 109.50205 * 301.40901 * 7 6 5 37 37 H 1.09006 * 109.59079 * 185.56474 * 8 7 6 38 38 H 1.09003 * 109.70652 * 65.21525 * 8 7 6 39 39 H 1.08997 * 109.47261 * 65.47364 * 14 12 10 40 40 H 1.09003 * 109.47144 * 185.47065 * 14 12 10 41 41 H 1.08999 * 109.47178 * 305.46344 * 14 12 10 42 42 H 0.97001 * 120.00154 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.47202 * 215.65437 * 24 15 12 44 44 H 1.09002 * 109.46779 * 335.65153 * 24 15 12 45 45 H 1.08998 * 109.46960 * 300.00142 * 25 24 15 46 46 H 1.08999 * 109.46715 * 59.99822 * 25 24 15 47 47 H 1.08998 * 109.47087 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7022 1.9495 -0.9039 5 6 1.5025 2.1773 1.2321 6 6 2.1258 3.5733 1.3008 7 6 3.6451 3.4489 1.4369 8 6 4.2068 2.7289 0.2073 9 7 3.5083 1.4459 0.0505 10 6 4.2013 0.2940 -0.0454 11 8 3.6220 -0.7441 -0.2855 12 6 5.6962 0.2957 0.1458 13 1 5.9572 0.9688 0.9624 14 6 6.3743 0.7688 -1.1416 15 7 6.1490 -1.0601 0.4665 16 6 6.6720 -1.3328 1.7023 17 1 6.4885 -2.2903 2.1671 18 6 7.4382 -0.3787 2.3577 19 7 7.7658 0.7380 1.7430 20 14 8.0040 -0.6796 4.1124 21 1 9.3208 -1.3661 4.0970 22 1 8.1312 0.6192 4.8210 23 1 7.0100 -1.5310 4.8140 24 6 6.0425 -2.1241 -0.5349 25 6 7.3742 -2.2629 -1.2753 26 1 -0.3634 0.4602 -0.9189 27 1 -0.3633 -1.0259 0.0609 28 1 -0.3634 0.5656 0.8579 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.7621 1.6182 2.1310 32 1 0.4185 2.2661 1.1587 33 1 1.8866 4.1231 0.3906 34 1 1.7266 4.1072 2.1632 35 1 4.0865 4.4429 1.5091 36 1 3.8846 2.8780 2.3338 37 1 5.2734 2.5500 0.3440 38 1 4.0501 3.3412 -0.6808 39 1 6.1135 1.8106 -1.3279 40 1 7.4555 0.6781 -1.0372 41 1 6.0372 0.1548 -1.9767 42 1 8.3008 1.4049 2.2011 43 1 5.8016 -3.0654 -0.0407 44 1 5.2553 -1.8756 -1.2466 45 1 7.6150 -1.3217 -1.7695 46 1 8.1614 -2.5114 -0.5635 47 1 7.2948 -3.0543 -2.0206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411216163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = -28.859272 kcal Electronic energy + Delta-G solvation = -24915.924798 eV Core-core repulsion = 21712.839251 eV Total energy + Delta-G solvation = -3203.085547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47067 -38.72532 -37.33879 -35.18960 -33.82214 -33.71072 -31.95733 -30.28831 -30.05273 -26.56058 -26.00197 -25.03086 -24.13419 -22.62172 -22.03434 -21.35192 -19.80556 -18.70957 -17.58222 -16.99619 -16.38020 -16.18982 -15.74558 -15.46773 -15.42535 -15.24241 -14.80293 -14.52769 -14.32838 -14.04795 -13.95300 -13.55878 -13.47075 -13.22954 -13.09328 -12.93060 -12.90920 -12.72055 -12.55676 -12.28276 -12.16286 -12.09436 -11.96440 -11.76616 -11.67735 -11.55757 -11.46560 -11.36161 -11.28439 -10.56113 -9.76477 -9.34076 -8.47570 -7.82605 -5.42307 1.44873 1.46907 1.55281 1.96028 2.25415 2.51703 3.28600 3.65337 3.77325 3.90419 3.97367 4.12980 4.24649 4.33225 4.34658 4.44618 4.48417 4.57972 4.64122 4.68412 4.74978 4.80524 4.87665 4.88049 4.91437 4.94022 5.00296 5.02888 5.11364 5.11955 5.15778 5.23388 5.28417 5.32488 5.36626 5.49111 5.52488 5.56920 5.60675 5.63351 5.72049 5.96199 6.48298 6.66169 7.17334 7.56177 7.87521 8.38472 9.16424 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.006924 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.919831 B = 4043.028573 C = 4714.727443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.142 3.858 4 H 0.081 0.919 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.133 4.133 8 C 0.101 3.899 9 N -0.616 5.616 10 C 0.490 3.510 11 O -0.569 6.569 12 C 0.159 3.841 13 H 0.118 0.882 14 C -0.121 4.121 15 N -0.581 5.581 16 C -0.268 4.268 17 H 0.046 0.954 18 C -0.028 4.028 19 N -0.911 5.911 20 Si 0.960 3.040 21 H -0.284 1.284 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.149 3.851 25 C -0.152 4.152 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.256 0.744 43 H 0.021 0.979 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.032 0.968 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 8.717 -4.056 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C 0.040 3.960 4 H 0.099 0.901 5 C -0.165 4.165 6 C -0.148 4.148 7 C -0.171 4.171 8 C -0.021 4.021 9 N -0.350 5.350 10 C 0.278 3.722 11 O -0.449 6.449 12 C 0.049 3.951 13 H 0.135 0.865 14 C -0.180 4.180 15 N -0.302 5.302 16 C -0.399 4.399 17 H 0.064 0.936 18 C -0.225 4.225 19 N -0.555 5.555 20 Si 0.788 3.212 21 H -0.210 1.210 22 H -0.209 1.209 23 H -0.209 1.209 24 C 0.024 3.976 25 C -0.211 4.211 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.854 8.278 -4.117 14.258 hybrid contribution 0.705 -0.574 1.154 1.469 sum -10.149 7.704 -2.963 13.082 Atomic orbital electron populations 1.21919 0.94537 1.01734 1.02501 1.21812 0.95467 0.95034 1.02028 1.21403 0.79163 0.96730 0.98754 0.90077 1.22019 1.01390 0.96492 0.96609 1.21496 0.93989 0.95984 1.03353 1.21894 0.97227 1.01042 0.96948 1.21939 0.97295 0.83747 0.99108 1.48463 1.06573 1.07030 1.72940 1.22880 0.92358 0.82824 0.74106 1.90537 1.71095 1.33536 1.49714 1.20536 0.85626 0.89468 0.99514 0.86486 1.21868 1.00890 0.99594 0.95625 1.43703 1.69797 1.05463 1.11202 1.19281 1.24825 1.01105 0.94645 0.93643 1.25738 0.97180 0.97716 1.01885 1.69876 1.39800 1.08873 1.36993 0.85417 0.78093 0.76996 0.80712 1.21025 1.20896 1.20934 1.20799 0.95122 0.90706 0.91002 1.22226 0.99138 1.00525 0.99241 0.91480 0.93177 0.91612 0.91771 0.95441 0.94192 0.88582 0.89975 0.90393 0.88724 0.94187 0.90375 0.89417 0.91782 0.92894 0.94725 0.93467 0.96057 0.93268 0.93544 0.94913 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.63 71.98 0.69 -2.90 16 2 C -0.11 -3.52 3.90 30.59 0.12 -3.40 16 3 C 0.14 4.15 3.03 44.98 0.14 4.28 16 4 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 5 C -0.13 -3.05 4.80 30.67 0.15 -2.90 16 6 C -0.11 -2.21 5.88 30.62 0.18 -2.03 16 7 C -0.13 -3.29 6.08 30.66 0.19 -3.10 16 8 C 0.10 2.93 5.63 86.36 0.49 3.42 16 9 N -0.62 -21.46 2.97 -795.07 -2.36 -23.83 16 10 C 0.49 21.53 6.71 87.66 0.59 22.11 16 11 O -0.57 -27.54 10.07 -3.03 -0.03 -27.57 16 12 C 0.16 7.47 1.35 44.24 0.06 7.53 16 13 H 0.12 6.01 4.17 -2.39 -0.01 6.00 16 14 C -0.12 -5.01 7.63 71.98 0.55 -4.46 16 15 N -0.58 -30.37 2.25 -682.19 -1.53 -31.91 16 16 C -0.27 -15.15 9.57 84.03 0.80 -14.34 16 17 H 0.05 2.65 7.84 -2.91 -0.02 2.63 16 18 C -0.03 -1.53 5.15 84.86 0.44 -1.09 16 19 N -0.91 -48.96 10.78 21.65 0.23 -48.72 16 20 Si 0.96 44.35 29.56 68.60 2.03 46.37 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 C 0.15 7.09 5.07 86.38 0.44 7.53 16 25 C -0.15 -6.38 10.03 71.98 0.72 -5.66 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.37 6.36 -2.39 -0.02 1.36 16 29 H 0.06 2.49 6.24 -2.39 -0.01 2.48 16 30 H 0.03 1.11 7.24 -2.39 -0.02 1.10 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.80 6.66 -2.39 -0.02 1.79 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 2.65 4.79 -2.38 -0.01 2.63 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.25 6.65 -2.39 -0.02 2.24 16 40 H 0.05 2.41 7.62 -2.39 -0.02 2.39 16 41 H 0.03 1.38 7.12 -2.39 -0.02 1.37 16 42 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 43 H 0.02 1.03 8.09 -2.39 -0.02 1.01 16 44 H 0.05 2.33 6.19 -2.39 -0.01 2.32 16 45 H 0.05 1.93 6.02 -2.39 -0.01 1.92 16 46 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -63.59 344.29 4.81 -58.78 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.93 Total: 21.88 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.55 Total: 5.00 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.66 Total: -104.46 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.03 Total: -27.57 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.59 4.81 -58.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.924 kcal (2) G-P(sol) polarization free energy of solvation -63.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds