Wall clock time and date at job start Tue Mar 31 2020 06:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 N 1.46498 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00038 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99800 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99696 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.53862 * 60.10278 * 7 5 4 9 9 C 1.53113 * 109.50587 * 299.99973 * 7 5 4 10 10 C 1.53122 * 109.15959 * 182.40758 * 9 7 5 11 11 C 1.53033 * 109.28062 * 57.65693 * 10 9 7 12 12 N 1.46852 * 109.52227 * 300.81611 * 11 10 9 13 13 C 1.46894 * 111.00175 * 185.83740 * 12 11 10 14 14 H 1.09000 * 109.46695 * 54.22579 * 13 12 11 15 15 C 1.52997 * 109.47581 * 294.22290 * 13 12 11 16 16 C 1.53002 * 109.46926 * 174.21805 * 13 12 11 17 17 C 1.50704 * 109.47290 * 295.55034 * 16 13 12 18 18 H 1.08004 * 119.99777 * 5.02300 * 17 16 13 19 19 C 1.37873 * 120.00063 * 185.02390 * 17 16 13 20 20 N 1.31506 * 120.00249 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99881 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46813 * 90.00126 * 21 19 17 23 23 H 1.48494 * 109.46932 * 210.00032 * 21 19 17 24 24 H 1.48497 * 109.47104 * 330.00241 * 21 19 17 25 25 C 1.46854 * 111.19330 * 61.74035 * 12 11 10 26 26 H 1.08999 * 109.47419 * 300.00245 * 1 2 3 27 27 H 1.09006 * 109.46941 * 60.00157 * 1 2 3 28 28 H 1.09003 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46899 * 239.99736 * 2 1 3 30 30 H 1.09002 * 109.46468 * 119.99948 * 2 1 3 31 31 H 1.09008 * 109.47068 * 59.99838 * 3 2 1 32 32 H 1.08999 * 109.47278 * 300.00071 * 3 2 1 33 33 H 0.97000 * 120.00045 * 359.97438 * 4 3 2 34 34 H 1.08995 * 109.52611 * 62.50264 * 9 7 5 35 35 H 1.08999 * 109.57729 * 302.34081 * 9 7 5 36 36 H 1.09009 * 109.50139 * 177.59292 * 10 9 7 37 37 H 1.08996 * 109.50484 * 297.70622 * 10 9 7 38 38 H 1.08999 * 109.46479 * 60.83635 * 11 10 9 39 39 H 1.09001 * 109.46265 * 180.80330 * 11 10 9 40 40 H 1.08994 * 109.47351 * 179.97438 * 15 13 12 41 41 H 1.09007 * 109.46531 * 300.00075 * 15 13 12 42 42 H 1.08995 * 109.46937 * 59.99488 * 15 13 12 43 43 H 1.08996 * 109.46886 * 55.55250 * 16 13 12 44 44 H 1.09001 * 109.46839 * 175.55023 * 16 13 12 45 45 H 0.97002 * 120.00441 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.45966 * 178.24028 * 25 12 11 47 47 H 1.08998 * 109.44876 * 58.27418 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5724 3.6600 0.0008 7 6 5.6858 2.6097 0.0025 8 1 6.0511 2.0977 -0.8878 9 6 6.1960 1.8880 1.2527 10 6 7.7260 1.9450 1.2767 11 6 8.1778 3.4068 1.2453 12 7 7.6651 4.0529 0.0303 13 6 8.1931 5.4171 -0.1034 14 1 9.2817 5.3915 -0.0558 15 6 7.6531 6.2867 1.0337 16 6 7.7550 6.0041 -1.4467 17 6 8.3767 5.2119 -2.5678 18 1 8.9534 4.3257 -2.3476 19 6 8.2092 5.6184 -3.8746 20 7 8.7513 4.9268 -4.8530 21 14 7.2111 7.1509 -4.2554 22 1 8.1064 8.3355 -4.2627 23 1 6.5707 7.0062 -5.5873 24 1 6.1628 7.3291 -3.2188 25 6 6.1967 4.0522 0.0079 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9900 0.6025 0.0013 34 1 5.8706 0.8480 1.2313 35 1 5.7994 2.3755 2.1433 36 1 8.0936 1.4700 2.1864 37 1 8.1233 1.4224 0.4066 38 1 7.7916 3.9252 2.1229 39 1 9.2669 3.4504 1.2479 40 1 8.0452 7.2989 0.9348 41 1 6.5644 6.3121 0.9860 42 1 7.9651 5.8684 1.9906 43 1 6.6690 5.9568 -1.5270 44 1 8.0793 7.0427 -1.5123 45 1 8.6331 5.2126 -5.7724 46 1 5.8470 4.5648 -0.8882 47 1 5.8200 4.5677 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411220143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:47 Heat of formation + Delta-G solvation = -55.818236 kcal Electronic energy + Delta-G solvation = -23406.712186 eV Core-core repulsion = 20202.457610 eV Total energy + Delta-G solvation = -3204.254575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12574 -38.40762 -35.86000 -34.89257 -32.78064 -32.26540 -30.83254 -29.74273 -27.74718 -26.52669 -24.21949 -23.47164 -22.50535 -21.83995 -20.51102 -19.67581 -18.62808 -16.91856 -16.50964 -16.19366 -15.90822 -15.36895 -14.64471 -14.55625 -14.24198 -13.90935 -13.88976 -13.41821 -13.25169 -12.98977 -12.75321 -12.42761 -12.37280 -12.29183 -12.14113 -12.02470 -11.50755 -11.43023 -11.27379 -11.16322 -11.12258 -10.73880 -10.56107 -10.51373 -10.16057 -10.04171 -9.58351 -9.47777 -9.43507 -9.07154 -8.96065 -8.37728 -7.47658 -5.87237 -3.80999 2.81267 3.18840 3.39999 3.48051 3.53573 4.47072 4.58069 4.59444 4.68575 4.80057 4.93833 4.97632 5.06475 5.32367 5.34829 5.36799 5.45199 5.47234 5.53602 5.66993 5.70252 5.72991 5.78727 5.79077 5.84556 5.88201 5.93316 5.95310 6.03754 6.05001 6.23008 6.32558 6.37167 6.44187 6.52456 6.62763 6.71130 6.84049 7.17542 7.44134 7.52070 7.83125 7.88426 8.01054 8.34973 8.76828 9.26405 9.76829 11.26587 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.004831 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.452013 B = 5794.551852 C = 6849.296657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.521 3.479 6 O -0.538 6.538 7 C -0.104 4.104 8 H 0.110 0.890 9 C -0.106 4.106 10 C -0.114 4.114 11 C 0.050 3.950 12 N -0.510 5.510 13 C 0.099 3.901 14 H 0.077 0.923 15 C -0.189 4.189 16 C -0.010 4.010 17 C -0.491 4.491 18 H 0.081 0.919 19 C 0.063 3.937 20 N -0.908 5.908 21 Si 0.869 3.131 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.267 1.267 25 C 0.078 3.922 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.400 0.600 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.018 0.982 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.347 -10.712 14.176 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.389 5.389 5 C 0.308 3.692 6 O -0.413 6.413 7 C -0.126 4.126 8 H 0.128 0.872 9 C -0.144 4.144 10 C -0.152 4.152 11 C -0.078 4.078 12 N -0.234 5.234 13 C -0.009 4.009 14 H 0.095 0.905 15 C -0.248 4.248 16 C -0.047 4.047 17 C -0.529 4.529 18 H 0.099 0.901 19 C -0.137 4.137 20 N -0.549 5.549 21 Si 0.697 3.303 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.192 1.192 25 C -0.050 4.050 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.036 0.964 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -10.614 -10.205 13.575 20.027 hybrid contribution -0.641 0.864 0.282 1.112 sum -11.255 -9.341 13.858 20.149 Atomic orbital electron populations 1.21681 0.94687 1.02024 1.02346 1.21735 0.96886 0.96025 1.02706 1.21363 0.80087 0.96867 1.02329 1.46040 1.07017 1.08936 1.76905 1.20818 0.90316 0.83256 0.74857 1.90693 1.70568 1.31371 1.48715 1.21370 0.89936 1.00256 1.01043 0.87196 1.21530 0.96915 0.99390 0.96583 1.21563 0.94445 0.97085 1.02064 1.22103 0.99954 0.94123 0.91629 1.61951 1.06839 1.19296 1.35266 1.21657 0.98875 0.85236 0.95145 0.90511 1.22574 1.01680 1.01083 0.99445 1.19733 0.96843 0.95556 0.92590 1.21075 1.31524 1.11320 0.88974 0.90094 1.24996 0.95590 0.96523 0.96577 1.69906 1.45872 1.39778 0.99329 0.86943 0.81252 0.84416 0.77653 1.20572 1.21640 1.19211 1.21796 0.87978 0.93035 1.02241 0.92430 0.92301 0.92269 0.91211 0.91405 0.91781 0.91563 0.76631 0.91952 0.92186 0.91838 0.90593 0.95662 0.91016 0.92537 0.92756 0.93724 0.96399 0.96749 0.93129 0.88870 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.14 -0.96 6.05 -26.73 -0.16 -1.12 16 3 C 0.12 1.21 5.67 -4.04 -0.02 1.18 16 4 N -0.74 -8.32 5.46 -60.29 -0.33 -8.65 16 5 C 0.52 8.03 7.16 -10.99 -0.08 7.95 16 6 O -0.54 -10.49 15.98 5.56 0.09 -10.40 16 7 C -0.10 -1.58 2.69 -91.70 -0.25 -1.82 16 8 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 9 C -0.11 -1.25 5.16 -26.61 -0.14 -1.39 16 10 C -0.11 -1.40 6.09 -26.65 -0.16 -1.56 16 11 C 0.05 0.75 5.04 -3.83 -0.02 0.73 16 12 N -0.51 -9.59 4.32 -226.69 -0.98 -10.57 16 13 C 0.10 1.99 2.30 -67.72 -0.16 1.83 16 14 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 15 C -0.19 -3.23 8.50 37.16 0.32 -2.91 16 16 C -0.01 -0.24 3.34 -27.88 -0.09 -0.33 16 17 C -0.49 -14.02 9.38 -34.44 -0.32 -14.34 16 18 H 0.08 2.50 7.97 -52.48 -0.42 2.09 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 21 Si 0.87 22.50 27.37 -169.99 -4.65 17.85 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.27 -6.79 6.69 56.52 0.38 -6.41 16 25 C 0.08 1.44 3.20 -3.83 -0.01 1.43 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 3.40 7.94 -40.82 -0.32 3.07 16 34 H 0.06 0.57 7.64 -51.93 -0.40 0.17 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.37 6.75 -51.93 -0.35 0.02 16 39 H 0.07 1.05 8.07 -51.93 -0.42 0.64 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.96 6.51 -51.92 -0.34 0.62 16 42 H 0.04 0.67 6.67 -51.93 -0.35 0.33 16 43 H 0.02 0.45 5.50 -51.93 -0.29 0.17 16 44 H 0.01 0.35 7.29 -51.93 -0.38 -0.03 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.09 2.07 5.94 -51.93 -0.31 1.76 16 47 H 0.03 0.59 6.55 -51.93 -0.34 0.25 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -33.46 358.88 -9.07 -42.54 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.56 Total: 0.77 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.83 Total: -9.20 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.54 Total: -46.96 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.65 Total: 17.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.46 -9.07 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.282 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds