Wall clock time and date at job start Tue Mar 31 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 N 1.46498 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.34779 * 120.00038 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99800 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99696 * 179.97438 * 5 4 3 8 8 H 1.09002 * 109.53862 * 60.10278 * 7 5 4 9 9 C 1.53113 * 109.50587 * 299.99973 * 7 5 4 10 10 C 1.53122 * 109.15959 * 182.40758 * 9 7 5 11 11 C 1.53033 * 109.28062 * 57.65693 * 10 9 7 12 12 N 1.46852 * 109.52227 * 300.81611 * 11 10 9 13 13 C 1.46894 * 111.00175 * 185.83740 * 12 11 10 14 14 H 1.09000 * 109.46695 * 54.22579 * 13 12 11 15 15 C 1.52997 * 109.47581 * 294.22290 * 13 12 11 16 16 C 1.53002 * 109.46926 * 174.21805 * 13 12 11 17 17 C 1.50704 * 109.47290 * 295.55034 * 16 13 12 18 18 H 1.08004 * 119.99777 * 5.02300 * 17 16 13 19 19 C 1.37873 * 120.00063 * 185.02390 * 17 16 13 20 20 N 1.31506 * 120.00249 * 180.02562 * 19 17 16 21 21 Si 1.86809 * 119.99881 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46813 * 90.00126 * 21 19 17 23 23 H 1.48494 * 109.46932 * 210.00032 * 21 19 17 24 24 H 1.48497 * 109.47104 * 330.00241 * 21 19 17 25 25 C 1.46854 * 111.19330 * 61.74035 * 12 11 10 26 26 H 1.08999 * 109.47419 * 300.00245 * 1 2 3 27 27 H 1.09006 * 109.46941 * 60.00157 * 1 2 3 28 28 H 1.09003 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46899 * 239.99736 * 2 1 3 30 30 H 1.09002 * 109.46468 * 119.99948 * 2 1 3 31 31 H 1.09008 * 109.47068 * 59.99838 * 3 2 1 32 32 H 1.08999 * 109.47278 * 300.00071 * 3 2 1 33 33 H 0.97000 * 120.00045 * 359.97438 * 4 3 2 34 34 H 1.08995 * 109.52611 * 62.50264 * 9 7 5 35 35 H 1.08999 * 109.57729 * 302.34081 * 9 7 5 36 36 H 1.09009 * 109.50139 * 177.59292 * 10 9 7 37 37 H 1.08996 * 109.50484 * 297.70622 * 10 9 7 38 38 H 1.08999 * 109.46479 * 60.83635 * 11 10 9 39 39 H 1.09001 * 109.46265 * 180.80330 * 11 10 9 40 40 H 1.08994 * 109.47351 * 179.97438 * 15 13 12 41 41 H 1.09007 * 109.46531 * 300.00075 * 15 13 12 42 42 H 1.08995 * 109.46937 * 59.99488 * 15 13 12 43 43 H 1.08996 * 109.46886 * 55.55250 * 16 13 12 44 44 H 1.09001 * 109.46839 * 175.55023 * 16 13 12 45 45 H 0.97002 * 120.00441 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.45966 * 178.24028 * 25 12 11 47 47 H 1.08998 * 109.44876 * 58.27418 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6098 0.0012 6 8 3.5724 3.6600 0.0008 7 6 5.6858 2.6097 0.0025 8 1 6.0511 2.0977 -0.8878 9 6 6.1960 1.8880 1.2527 10 6 7.7260 1.9450 1.2767 11 6 8.1778 3.4068 1.2453 12 7 7.6651 4.0529 0.0303 13 6 8.1931 5.4171 -0.1034 14 1 9.2817 5.3915 -0.0558 15 6 7.6531 6.2867 1.0337 16 6 7.7550 6.0041 -1.4467 17 6 8.3767 5.2119 -2.5678 18 1 8.9534 4.3257 -2.3476 19 6 8.2092 5.6184 -3.8746 20 7 8.7513 4.9268 -4.8530 21 14 7.2111 7.1509 -4.2554 22 1 8.1064 8.3355 -4.2627 23 1 6.5707 7.0062 -5.5873 24 1 6.1628 7.3291 -3.2188 25 6 6.1967 4.0522 0.0079 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9900 0.6025 0.0013 34 1 5.8706 0.8480 1.2313 35 1 5.7994 2.3755 2.1433 36 1 8.0936 1.4700 2.1864 37 1 8.1233 1.4224 0.4066 38 1 7.7916 3.9252 2.1229 39 1 9.2669 3.4504 1.2479 40 1 8.0452 7.2989 0.9348 41 1 6.5644 6.3121 0.9860 42 1 7.9651 5.8684 1.9906 43 1 6.6690 5.9568 -1.5270 44 1 8.0793 7.0427 -1.5123 45 1 8.6331 5.2126 -5.7724 46 1 5.8470 4.5648 -0.8882 47 1 5.8200 4.5677 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411220143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:46 Heat of formation + Delta-G solvation = -79.431304 kcal Electronic energy + Delta-G solvation = -23407.736125 eV Core-core repulsion = 20202.457610 eV Total energy + Delta-G solvation = -3205.278515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36776 -39.74033 -36.80041 -36.33699 -34.53028 -33.54065 -32.07683 -31.28327 -29.51729 -27.39920 -25.62170 -24.65850 -24.30007 -22.56937 -21.74879 -20.99051 -20.05512 -18.77381 -18.10006 -17.38566 -16.84181 -16.51161 -16.38029 -15.72308 -15.70392 -15.32949 -15.02286 -14.81066 -14.44363 -14.35421 -14.02079 -13.84735 -13.69605 -13.57918 -13.29194 -13.10507 -12.95137 -12.86885 -12.57597 -12.32047 -12.14875 -12.03870 -11.75901 -11.73214 -11.71187 -11.56809 -11.44013 -11.30915 -10.93898 -10.72213 -10.66853 -10.12115 -8.90918 -8.18977 -6.16426 1.31967 1.35417 1.46258 1.59556 2.14907 2.39682 3.09271 3.23264 3.65590 3.83525 3.91027 3.96975 4.07216 4.13341 4.25965 4.32399 4.36053 4.39773 4.40175 4.51620 4.65244 4.66863 4.73977 4.77323 4.83040 4.86553 4.89547 5.02074 5.07513 5.09953 5.13779 5.14391 5.15020 5.19058 5.24214 5.31170 5.33714 5.47441 5.50134 5.58281 5.74446 6.33778 6.43729 6.51812 6.56843 6.91893 7.23040 7.44346 8.97938 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014374 B = 0.004831 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.452013 B = 5794.551852 C = 6849.296657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.115 3.885 4 N -0.716 5.716 5 C 0.519 3.481 6 O -0.587 6.587 7 C -0.101 4.101 8 H 0.100 0.900 9 C -0.097 4.097 10 C -0.109 4.109 11 C 0.047 3.953 12 N -0.532 5.532 13 C 0.100 3.900 14 H 0.071 0.929 15 C -0.177 4.177 16 C -0.007 4.007 17 C -0.487 4.487 18 H 0.045 0.955 19 C 0.004 3.996 20 N -0.953 5.953 21 Si 0.933 3.067 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.086 3.914 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.416 0.584 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.007 0.993 44 H 0.017 0.983 45 H 0.261 0.739 46 H 0.045 0.955 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.075 -11.849 16.363 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.009 4.009 4 N -0.368 5.368 5 C 0.306 3.694 6 O -0.467 6.467 7 C -0.122 4.122 8 H 0.118 0.882 9 C -0.135 4.135 10 C -0.146 4.146 11 C -0.081 4.081 12 N -0.256 5.256 13 C -0.009 4.009 14 H 0.089 0.911 15 C -0.235 4.235 16 C -0.044 4.044 17 C -0.525 4.525 18 H 0.064 0.936 19 C -0.191 4.191 20 N -0.595 5.595 21 Si 0.758 3.242 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.187 1.187 25 C -0.042 4.042 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.025 0.975 44 H 0.036 0.964 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -11.337 -11.393 15.785 22.527 hybrid contribution -0.385 1.134 -0.397 1.262 sum -11.722 -10.259 15.388 21.896 Atomic orbital electron populations 1.21698 0.94148 1.02878 1.02097 1.21689 0.97227 0.93561 1.03831 1.21480 0.79144 0.99099 1.01171 1.45903 1.07648 1.08471 1.74827 1.20893 0.90454 0.83605 0.74479 1.90671 1.71357 1.33291 1.51354 1.21305 0.89915 0.98331 1.02692 0.88177 1.21536 0.96464 1.00972 0.94504 1.21571 0.94668 0.95081 1.03329 1.22246 1.00004 0.95699 0.90133 1.61889 1.06916 1.18698 1.38120 1.21478 0.98602 0.86821 0.93976 0.91084 1.22418 1.00892 1.01035 0.99194 1.19662 0.95711 0.95274 0.93779 1.21276 1.30483 1.10341 0.90408 0.93638 1.25808 0.96941 0.99838 0.96547 1.70046 1.47839 1.41853 0.99796 0.85919 0.79945 0.80916 0.77406 1.18981 1.21376 1.18692 1.21579 0.87929 0.94986 0.99720 0.92374 0.92975 0.90817 0.90578 0.89696 0.92362 0.93455 0.74636 0.88322 0.91717 0.88346 0.91628 0.94480 0.90920 0.91642 0.93655 0.91219 0.97480 0.96427 0.93026 0.93607 0.95225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.13 -1.48 6.05 30.59 0.19 -1.30 16 3 C 0.11 2.24 5.67 86.38 0.49 2.73 16 4 N -0.72 -15.16 5.46 -463.06 -2.53 -17.69 16 5 C 0.52 15.88 7.16 87.66 0.63 16.51 16 6 O -0.59 -23.53 15.98 -3.02 -0.05 -23.58 16 7 C -0.10 -3.00 2.69 -11.49 -0.03 -3.03 16 8 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 9 C -0.10 -2.01 5.16 30.67 0.16 -1.85 16 10 C -0.11 -2.37 6.09 30.65 0.19 -2.18 16 11 C 0.05 1.32 5.04 86.32 0.44 1.75 16 12 N -0.53 -20.11 4.32 -871.12 -3.76 -23.88 16 13 C 0.10 4.02 2.30 44.92 0.10 4.13 16 14 H 0.07 2.92 8.07 -2.39 -0.02 2.90 16 15 C -0.18 -5.82 8.50 71.98 0.61 -5.21 16 16 C -0.01 -0.34 3.34 29.85 0.10 -0.24 16 17 C -0.49 -28.77 9.38 25.60 0.24 -28.53 16 18 H 0.05 2.95 7.97 -2.91 -0.02 2.92 16 19 C 0.00 0.24 5.47 84.65 0.46 0.70 16 20 N -0.95 -61.55 13.96 21.44 0.30 -61.25 16 21 Si 0.93 47.27 27.37 68.60 1.88 49.15 16 22 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.26 -12.98 6.69 99.48 0.67 -12.32 16 25 C 0.09 3.27 3.20 86.32 0.28 3.55 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.42 5.94 7.94 -92.71 -0.74 5.21 16 34 H 0.10 1.37 7.64 -2.39 -0.02 1.35 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 0.97 6.75 -2.39 -0.02 0.95 16 39 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.57 6.51 -2.38 -0.02 1.55 16 42 H 0.07 1.94 6.67 -2.39 -0.02 1.93 16 43 H 0.01 0.37 5.50 -2.39 -0.01 0.35 16 44 H 0.02 0.85 7.29 -2.39 -0.02 0.83 16 45 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 46 H 0.05 2.14 5.94 -2.39 -0.01 2.13 16 47 H 0.03 1.11 6.55 -2.39 -0.02 1.10 16 Total: -1.00 -76.12 358.88 0.55 -75.58 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.15 Total: 15.57 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.56 Total: -13.90 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -5.99 Total: -102.82 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.58 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.88 Total: 49.15 kcal Total: -76.12 0.55 -75.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.855 kcal (2) G-P(sol) polarization free energy of solvation -76.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds