Wall clock time and date at job start Tue Mar 31 2020 06:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 N 1.46508 * 109.47242 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99939 * 179.72253 * 4 3 2 6 6 O 1.21282 * 120.00087 * 0.27399 * 5 4 3 7 7 C 1.50700 * 119.99702 * 180.27301 * 5 4 3 8 8 H 1.08994 * 109.50469 * 300.07802 * 7 5 4 9 9 C 1.53120 * 109.50291 * 60.19876 * 7 5 4 10 10 C 1.53118 * 109.16189 * 177.58989 * 9 7 5 11 11 C 1.53035 * 109.27978 * 302.35049 * 10 9 7 12 12 N 1.46844 * 109.52687 * 59.17573 * 11 10 9 13 13 C 1.46894 * 111.00015 * 174.16195 * 12 11 10 14 14 H 1.09006 * 109.46951 * 173.59734 * 13 12 11 15 15 C 1.52997 * 109.47287 * 53.60067 * 13 12 11 16 16 C 1.52999 * 109.47320 * 293.59741 * 13 12 11 17 17 C 1.50697 * 109.47199 * 296.00013 * 16 13 12 18 18 H 1.08008 * 119.99957 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00020 * 179.97438 * 17 16 13 20 20 N 1.31506 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47635 * 89.99968 * 21 19 17 23 23 H 1.48505 * 109.46903 * 210.00363 * 21 19 17 24 24 H 1.48500 * 109.47445 * 329.99509 * 21 19 17 25 25 C 1.46852 * 111.19558 * 298.26171 * 12 11 10 26 26 H 1.08996 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47272 * 299.99972 * 1 2 3 28 28 H 1.08993 * 109.47265 * 60.00083 * 1 2 3 29 29 H 1.08995 * 109.47385 * 239.99804 * 2 1 3 30 30 H 1.09000 * 109.47078 * 119.99589 * 2 1 3 31 31 H 1.08995 * 109.47654 * 60.00042 * 3 2 1 32 32 H 1.09007 * 109.47136 * 300.00019 * 3 2 1 33 33 H 0.96994 * 119.99738 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.52026 * 297.50119 * 9 7 5 35 35 H 1.09004 * 109.51967 * 57.68627 * 9 7 5 36 36 H 1.08997 * 109.50374 * 182.40521 * 10 9 7 37 37 H 1.09003 * 109.49814 * 62.29107 * 10 9 7 38 38 H 1.09007 * 109.45813 * 299.15995 * 11 10 9 39 39 H 1.09001 * 109.46190 * 179.19236 * 11 10 9 40 40 H 1.09004 * 109.47429 * 59.99831 * 15 13 12 41 41 H 1.09007 * 109.47335 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47310 * 299.99689 * 15 13 12 43 43 H 1.09001 * 109.46953 * 55.99644 * 16 13 12 44 44 H 1.08998 * 109.47621 * 175.99859 * 16 13 12 45 45 H 0.96995 * 120.00410 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46131 * 301.71911 * 25 12 11 47 47 H 1.09004 * 109.44852 * 181.75212 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0064 6 8 3.5724 3.6601 -0.0060 7 6 5.6858 2.6098 -0.0132 8 1 6.0538 2.0970 0.8753 9 6 6.1913 1.8896 -1.2664 10 6 7.7211 1.9466 -1.2961 11 6 8.1730 3.4084 -1.2645 12 7 7.6649 4.0530 -0.0469 13 6 8.1934 5.4170 0.0865 14 1 7.7149 5.9110 0.9322 15 6 7.9044 6.2034 -1.1937 16 6 9.7046 5.3581 0.3186 17 6 9.9850 4.6693 1.6292 18 1 9.1671 4.3099 2.2363 19 6 11.2856 4.4979 2.0535 20 7 12.2815 4.9350 1.3142 21 14 11.6332 3.6434 3.6779 22 1 11.7781 2.1835 3.4483 23 1 12.8893 4.1800 4.2606 24 1 10.5085 3.8877 4.6164 25 6 6.1966 4.0523 -0.0189 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9900 0.6026 -0.0006 34 1 5.8658 0.8495 -1.2449 35 1 5.7912 2.3792 -2.1542 36 1 8.0853 1.4728 -2.2077 37 1 8.1217 1.4230 -0.4281 38 1 7.7835 3.9279 -2.1401 39 1 9.2621 3.4521 -1.2711 40 1 6.8278 6.2455 -1.3591 41 1 8.2970 7.2155 -1.0950 42 1 8.3828 5.7095 -2.0394 43 1 10.1752 4.8018 -0.4921 44 1 10.1077 6.3704 0.3466 45 1 13.1965 4.8147 1.6129 46 1 5.8164 4.5689 -0.9003 47 1 5.8505 4.5638 0.8793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411220144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:50 Heat of formation + Delta-G solvation = -60.919408 kcal Electronic energy + Delta-G solvation = -23120.719741 eV Core-core repulsion = 19916.243962 eV Total energy + Delta-G solvation = -3204.475779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.18970 -38.38919 -35.96959 -34.80449 -32.85311 -32.33407 -30.72146 -29.65649 -27.23821 -26.56880 -24.22766 -23.47708 -22.54056 -21.92901 -20.95552 -19.54347 -18.62621 -16.90708 -16.26952 -16.09020 -16.00505 -15.37050 -14.78590 -14.47895 -14.16447 -14.07393 -13.83653 -13.58693 -13.27462 -13.06036 -12.75536 -12.42193 -12.35544 -12.16343 -11.97010 -11.72300 -11.50996 -11.40264 -11.25090 -11.13455 -11.06018 -10.69071 -10.56631 -10.45101 -10.28429 -10.11026 -9.79675 -9.60946 -9.18958 -9.10463 -8.92494 -8.22446 -7.40959 -5.85535 -3.82827 2.67976 3.08120 3.40888 3.46819 3.51358 4.46191 4.52756 4.59180 4.60191 4.77405 4.86588 4.95032 5.06254 5.25999 5.27163 5.33521 5.47636 5.49260 5.51525 5.64186 5.67020 5.75608 5.78028 5.84317 5.85160 5.90825 5.97711 6.05599 6.13530 6.14960 6.21773 6.29532 6.40086 6.50093 6.62186 6.68193 6.79586 7.05164 7.40054 7.59735 7.72531 7.96993 8.07086 8.16579 8.22429 8.62740 9.23263 9.78489 11.26548 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003714 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.963304 B = 7536.369491 C = 8078.370910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.521 3.479 6 O -0.540 6.540 7 C -0.103 4.103 8 H 0.107 0.893 9 C -0.106 4.106 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.511 5.511 13 C 0.089 3.911 14 H 0.069 0.931 15 C -0.184 4.184 16 C 0.030 3.970 17 C -0.487 4.487 18 H 0.061 0.939 19 C 0.049 3.951 20 N -0.905 5.905 21 Si 0.889 3.111 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.275 1.275 25 C 0.076 3.924 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.257 0.743 46 H 0.033 0.967 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 -10.642 -5.963 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.388 5.388 5 C 0.307 3.693 6 O -0.417 6.417 7 C -0.125 4.125 8 H 0.125 0.875 9 C -0.144 4.144 10 C -0.152 4.152 11 C -0.075 4.075 12 N -0.234 5.234 13 C -0.019 4.019 14 H 0.088 0.912 15 C -0.243 4.243 16 C -0.007 4.007 17 C -0.526 4.526 18 H 0.079 0.921 19 C -0.150 4.150 20 N -0.546 5.546 21 Si 0.718 3.282 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.200 1.200 25 C -0.053 4.053 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.559 -10.122 -5.547 21.856 hybrid contribution 0.195 -0.464 0.205 0.543 sum -18.364 -10.586 -5.343 21.859 Atomic orbital electron populations 1.21678 0.94637 1.02089 1.02341 1.21737 0.96928 0.95974 1.02756 1.21370 0.80018 0.96930 1.02316 1.46061 1.07073 1.08989 1.76720 1.20865 0.90357 0.83247 0.74823 1.90686 1.70622 1.31389 1.48964 1.21364 0.89745 1.00143 1.01258 0.87533 1.21543 0.97421 0.99179 0.96255 1.21583 0.93741 0.97699 1.02222 1.22112 1.01693 0.93110 0.90592 1.62003 1.04883 1.19674 1.36853 1.21894 0.99930 0.85417 0.94676 0.91246 1.22525 0.99875 1.01349 1.00578 1.19202 0.87085 0.97021 0.97373 1.21180 0.91621 1.35475 1.04295 0.92125 1.25005 0.96575 0.96323 0.97052 1.69959 0.98757 1.47921 1.37956 0.86639 0.77384 0.79696 0.84481 1.20976 1.21691 1.20046 1.21768 0.89241 0.92969 1.01326 0.92224 0.92337 0.92382 0.91323 0.91250 0.91615 0.91714 0.76542 0.92039 0.92159 0.91792 0.90585 0.95817 0.89254 0.94065 0.92565 0.92878 0.96283 0.96349 0.93379 0.94924 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.14 -0.83 6.05 -26.73 -0.16 -0.99 16 3 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 4 N -0.74 -7.35 5.46 -60.29 -0.33 -7.68 16 5 C 0.52 7.16 7.16 -10.98 -0.08 7.09 16 6 O -0.54 -9.52 15.98 5.56 0.09 -9.43 16 7 C -0.10 -1.43 2.69 -91.69 -0.25 -1.67 16 8 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 9 C -0.11 -1.26 5.16 -26.61 -0.14 -1.40 16 10 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 11 C 0.05 0.91 4.53 -3.84 -0.02 0.90 16 12 N -0.51 -9.74 4.29 -226.69 -0.97 -10.71 16 13 C 0.09 1.85 2.26 -67.72 -0.15 1.70 16 14 H 0.07 1.50 7.98 -51.93 -0.41 1.09 16 15 C -0.18 -3.33 8.44 37.16 0.31 -3.02 16 16 C 0.03 0.77 4.37 -27.88 -0.12 0.65 16 17 C -0.49 -13.62 8.81 -34.44 -0.30 -13.93 16 18 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16 19 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 20 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.08 1.29 3.72 -3.83 -0.01 1.27 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.40 2.97 7.95 -40.82 -0.32 2.64 16 34 H 0.06 0.56 7.66 -51.93 -0.40 0.17 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.39 6.57 -51.92 -0.34 0.05 16 39 H 0.09 1.78 6.17 -51.93 -0.32 1.46 16 40 H 0.04 0.69 6.84 -51.93 -0.35 0.34 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 43 H 0.02 0.51 6.28 -51.93 -0.33 0.18 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.03 0.57 6.83 -51.93 -0.35 0.22 16 47 H 0.07 1.36 7.99 -51.93 -0.41 0.95 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -32.18 362.81 -9.49 -41.66 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.62 Total: -0.57 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.83 Total: -9.25 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.56 Total: -44.91 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.18 -9.49 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.254 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds