Wall clock time and date at job start Tue Mar 31 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46959 * 2 1 4 4 N 1.46508 * 109.47242 * 180.02562 * 3 2 1 5 5 C 1.34780 * 119.99939 * 179.72253 * 4 3 2 6 6 O 1.21282 * 120.00087 * 0.27399 * 5 4 3 7 7 C 1.50700 * 119.99702 * 180.27301 * 5 4 3 8 8 H 1.08994 * 109.50469 * 300.07802 * 7 5 4 9 9 C 1.53120 * 109.50291 * 60.19876 * 7 5 4 10 10 C 1.53118 * 109.16189 * 177.58989 * 9 7 5 11 11 C 1.53035 * 109.27978 * 302.35049 * 10 9 7 12 12 N 1.46844 * 109.52687 * 59.17573 * 11 10 9 13 13 C 1.46894 * 111.00015 * 174.16195 * 12 11 10 14 14 H 1.09006 * 109.46951 * 173.59734 * 13 12 11 15 15 C 1.52997 * 109.47287 * 53.60067 * 13 12 11 16 16 C 1.52999 * 109.47320 * 293.59741 * 13 12 11 17 17 C 1.50697 * 109.47199 * 296.00013 * 16 13 12 18 18 H 1.08008 * 119.99957 * 359.97438 * 17 16 13 19 19 C 1.37879 * 120.00020 * 179.97438 * 17 16 13 20 20 N 1.31506 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47635 * 89.99968 * 21 19 17 23 23 H 1.48505 * 109.46903 * 210.00363 * 21 19 17 24 24 H 1.48500 * 109.47445 * 329.99509 * 21 19 17 25 25 C 1.46852 * 111.19558 * 298.26171 * 12 11 10 26 26 H 1.08996 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47272 * 299.99972 * 1 2 3 28 28 H 1.08993 * 109.47265 * 60.00083 * 1 2 3 29 29 H 1.08995 * 109.47385 * 239.99804 * 2 1 3 30 30 H 1.09000 * 109.47078 * 119.99589 * 2 1 3 31 31 H 1.08995 * 109.47654 * 60.00042 * 3 2 1 32 32 H 1.09007 * 109.47136 * 300.00019 * 3 2 1 33 33 H 0.96994 * 119.99738 * 359.97438 * 4 3 2 34 34 H 1.09000 * 109.52026 * 297.50119 * 9 7 5 35 35 H 1.09004 * 109.51967 * 57.68627 * 9 7 5 36 36 H 1.08997 * 109.50374 * 182.40521 * 10 9 7 37 37 H 1.09003 * 109.49814 * 62.29107 * 10 9 7 38 38 H 1.09007 * 109.45813 * 299.15995 * 11 10 9 39 39 H 1.09001 * 109.46190 * 179.19236 * 11 10 9 40 40 H 1.09004 * 109.47429 * 59.99831 * 15 13 12 41 41 H 1.09007 * 109.47335 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47310 * 299.99689 * 15 13 12 43 43 H 1.09001 * 109.46953 * 55.99644 * 16 13 12 44 44 H 1.08998 * 109.47621 * 175.99859 * 16 13 12 45 45 H 0.96995 * 120.00410 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46131 * 301.71911 * 25 12 11 47 47 H 1.09004 * 109.44852 * 181.75212 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1788 2.6098 -0.0064 6 8 3.5724 3.6601 -0.0060 7 6 5.6858 2.6098 -0.0132 8 1 6.0538 2.0970 0.8753 9 6 6.1913 1.8896 -1.2664 10 6 7.7211 1.9466 -1.2961 11 6 8.1730 3.4084 -1.2645 12 7 7.6649 4.0530 -0.0469 13 6 8.1934 5.4170 0.0865 14 1 7.7149 5.9110 0.9322 15 6 7.9044 6.2034 -1.1937 16 6 9.7046 5.3581 0.3186 17 6 9.9850 4.6693 1.6292 18 1 9.1671 4.3099 2.2363 19 6 11.2856 4.4979 2.0535 20 7 12.2815 4.9350 1.3142 21 14 11.6332 3.6434 3.6779 22 1 11.7781 2.1835 3.4483 23 1 12.8893 4.1800 4.2606 24 1 10.5085 3.8877 4.6164 25 6 6.1966 4.0523 -0.0189 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9900 0.6026 -0.0006 34 1 5.8658 0.8495 -1.2449 35 1 5.7912 2.3792 -2.1542 36 1 8.0853 1.4728 -2.2077 37 1 8.1217 1.4230 -0.4281 38 1 7.7835 3.9279 -2.1401 39 1 9.2621 3.4521 -1.2711 40 1 6.8278 6.2455 -1.3591 41 1 8.2970 7.2155 -1.0950 42 1 8.3828 5.7095 -2.0394 43 1 10.1752 4.8018 -0.4921 44 1 10.1077 6.3704 0.3466 45 1 13.1965 4.8147 1.6129 46 1 5.8164 4.5689 -0.9003 47 1 5.8505 4.5638 0.8793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411220144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:49 Heat of formation + Delta-G solvation = -82.285882 kcal Electronic energy + Delta-G solvation = -23121.646261 eV Core-core repulsion = 19916.243962 eV Total energy + Delta-G solvation = -3205.402299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33953 -39.73049 -36.79515 -36.28072 -34.52552 -33.48733 -31.94832 -31.21502 -29.13756 -27.34106 -25.67103 -24.99778 -24.06008 -22.55611 -22.21545 -20.72744 -20.08385 -18.33262 -18.01525 -17.24783 -16.84445 -16.56348 -16.48302 -15.89841 -15.43043 -15.35399 -14.99451 -14.85922 -14.57893 -14.08162 -13.81533 -13.72767 -13.58873 -13.34699 -13.27642 -13.08100 -12.92845 -12.82278 -12.58668 -12.42568 -12.35038 -12.02472 -11.86311 -11.74148 -11.70212 -11.66813 -11.26361 -11.07550 -11.03247 -10.65875 -10.44551 -10.10015 -8.92399 -8.07371 -6.11998 1.43757 1.44658 1.55739 1.60741 2.15496 2.49670 3.13781 3.29539 3.65445 3.82258 3.92186 3.97775 4.09171 4.18017 4.27444 4.31130 4.36779 4.40032 4.44738 4.52443 4.66422 4.67645 4.74981 4.77958 4.81012 4.88624 4.92700 5.01760 5.06850 5.09896 5.16216 5.20035 5.20668 5.25784 5.28440 5.35116 5.48864 5.51263 5.53512 5.71062 5.92043 6.33127 6.46434 6.50662 6.55791 7.01156 7.24186 7.53500 9.04775 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021240 B = 0.003714 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.963304 B = 7536.369491 C = 8078.370910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.716 5.716 5 C 0.522 3.478 6 O -0.585 6.585 7 C -0.098 4.098 8 H 0.111 0.889 9 C -0.096 4.096 10 C -0.109 4.109 11 C 0.052 3.948 12 N -0.525 5.525 13 C 0.094 3.906 14 H 0.057 0.943 15 C -0.173 4.173 16 C 0.039 3.961 17 C -0.497 4.497 18 H 0.057 0.943 19 C -0.005 4.005 20 N -0.940 5.940 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.288 1.288 24 H -0.269 1.269 25 C 0.081 3.919 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.416 0.584 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.001 0.999 44 H -0.010 1.010 45 H 0.258 0.742 46 H 0.027 0.973 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.912 -13.294 -6.050 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.008 4.008 4 N -0.369 5.369 5 C 0.309 3.691 6 O -0.465 6.465 7 C -0.120 4.120 8 H 0.129 0.871 9 C -0.134 4.134 10 C -0.147 4.147 11 C -0.076 4.076 12 N -0.248 5.248 13 C -0.014 4.014 14 H 0.075 0.925 15 C -0.232 4.232 16 C 0.002 3.998 17 C -0.535 4.535 18 H 0.075 0.925 19 C -0.201 4.201 20 N -0.583 5.583 21 Si 0.783 3.217 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.193 1.193 25 C -0.047 4.047 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.254 0.746 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.008 0.992 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.026 -12.829 -5.639 24.442 hybrid contribution 0.633 0.382 0.220 0.772 sum -19.393 -12.447 -5.419 23.672 Atomic orbital electron populations 1.21695 0.94236 1.02806 1.02128 1.21688 0.97160 0.93773 1.03787 1.21471 0.79126 0.98923 1.01291 1.45921 1.07649 1.08567 1.74736 1.20793 0.90207 0.83575 0.74519 1.90676 1.71288 1.33168 1.51400 1.21285 0.89981 0.98008 1.02691 0.87086 1.21521 0.95623 1.01249 0.95013 1.21553 0.95246 0.94784 1.03069 1.22120 0.99653 0.95710 0.90071 1.61921 1.06306 1.18396 1.38220 1.21601 0.96736 0.87347 0.95722 0.92489 1.22377 1.00840 1.00911 0.99069 1.19031 0.90183 0.94655 0.95974 1.21452 0.91661 1.35329 1.05097 0.92496 1.25844 0.96421 0.97090 1.00701 1.70090 0.99137 1.49200 1.39840 0.85562 0.77246 0.78801 0.80069 1.19951 1.21399 1.19313 1.21682 0.87586 0.95360 1.00080 0.91009 0.92730 0.92533 0.90045 0.90378 0.92929 0.92600 0.74626 0.88067 0.92003 0.89353 0.91470 0.95022 0.92614 0.92555 0.92404 0.92565 0.98084 0.99157 0.93289 0.95493 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.13 -1.17 6.05 30.59 0.19 -0.99 16 3 C 0.12 1.86 5.67 86.38 0.49 2.35 16 4 N -0.72 -12.45 5.46 -463.04 -2.53 -14.98 16 5 C 0.52 13.56 7.16 87.66 0.63 14.19 16 6 O -0.59 -20.44 15.98 -3.04 -0.05 -20.48 16 7 C -0.10 -2.53 2.69 -11.49 -0.03 -2.56 16 8 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 9 C -0.10 -1.98 5.16 30.67 0.16 -1.82 16 10 C -0.11 -2.77 6.09 30.65 0.19 -2.58 16 11 C 0.05 1.79 4.53 86.33 0.39 2.18 16 12 N -0.52 -20.19 4.29 -871.12 -3.74 -23.93 16 13 C 0.09 4.06 2.26 44.92 0.10 4.16 16 14 H 0.06 2.56 7.98 -2.38 -0.02 2.54 16 15 C -0.17 -6.32 8.44 71.98 0.61 -5.72 16 16 C 0.04 2.05 4.37 29.85 0.13 2.18 16 17 C -0.50 -28.45 8.81 25.60 0.23 -28.23 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 20 N -0.94 -57.84 13.29 21.45 0.28 -57.56 16 21 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 25 C 0.08 2.75 3.72 86.32 0.32 3.08 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.42 4.56 7.95 -92.71 -0.74 3.82 16 34 H 0.10 1.34 7.66 -2.39 -0.02 1.32 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.03 1.03 6.57 -2.38 -0.02 1.01 16 39 H 0.06 2.28 6.17 -2.39 -0.01 2.27 16 40 H 0.06 1.88 6.84 -2.38 -0.02 1.86 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.06 2.00 6.46 -2.39 -0.02 1.98 16 43 H 0.00 0.05 6.28 -2.39 -0.01 0.04 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 46 H 0.03 0.94 6.83 -2.38 -0.02 0.92 16 47 H 0.05 2.06 7.99 -2.38 -0.02 2.04 16 Total: -1.00 -71.51 362.81 0.76 -70.76 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.19 Total: 12.86 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 4.57 Total: -14.18 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -5.98 Total: -96.47 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -71.51 0.76 -70.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.531 kcal (2) G-P(sol) polarization free energy of solvation -71.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds