Wall clock time and date at job start Tue Mar 31 2020 06:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47053 * 2 1 4 4 N 1.46495 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.34785 * 119.99768 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00091 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99806 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.53782 * 59.89815 * 7 5 4 9 9 C 1.53120 * 109.50166 * 299.80186 * 7 5 4 10 10 C 1.53123 * 109.16085 * 182.40768 * 9 7 5 11 11 C 1.53034 * 109.27858 * 57.65415 * 10 9 7 12 12 N 1.46845 * 109.52249 * 300.82193 * 11 10 9 13 13 C 1.46907 * 111.00033 * 185.84255 * 12 11 10 14 14 H 1.08993 * 109.47199 * 186.73852 * 13 12 11 15 15 C 1.53000 * 109.46601 * 306.73683 * 13 12 11 16 16 C 1.52998 * 109.47279 * 66.73228 * 13 12 11 17 17 C 1.50706 * 109.46678 * 63.87498 * 16 13 12 18 18 H 1.07995 * 120.00126 * 359.97438 * 17 16 13 19 19 C 1.37883 * 119.99456 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99508 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47267 * 60.00184 * 21 19 17 23 23 H 1.48508 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47515 * 300.00052 * 21 19 17 25 25 C 1.46842 * 111.20003 * 61.74122 * 12 11 10 26 26 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46778 * 299.99147 * 1 2 3 28 28 H 1.08993 * 109.47256 * 59.99527 * 1 2 3 29 29 H 1.09003 * 109.46778 * 240.00853 * 2 1 3 30 30 H 1.08994 * 109.47773 * 120.00547 * 2 1 3 31 31 H 1.09001 * 109.47157 * 60.00222 * 3 2 1 32 32 H 1.09003 * 109.47069 * 300.00694 * 3 2 1 33 33 H 0.97002 * 120.00282 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.52679 * 62.50390 * 9 7 5 35 35 H 1.09001 * 109.57720 * 302.34000 * 9 7 5 36 36 H 1.09001 * 109.50192 * 297.71376 * 10 9 7 37 37 H 1.08998 * 109.50155 * 177.59653 * 10 9 7 38 38 H 1.08997 * 109.46232 * 180.80737 * 11 10 9 39 39 H 1.08998 * 109.45838 * 60.83412 * 11 10 9 40 40 H 1.09001 * 109.47475 * 60.00203 * 15 13 12 41 41 H 1.09001 * 109.46935 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47014 * 299.99634 * 15 13 12 43 43 H 1.08994 * 109.47154 * 183.87514 * 16 13 12 44 44 H 1.08998 * 109.47258 * 303.87441 * 16 13 12 45 45 H 0.97003 * 120.00393 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46155 * 58.27582 * 25 12 11 47 47 H 1.09000 * 109.46473 * 178.24173 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5724 3.6601 0.0011 7 6 5.6858 2.6098 -0.0014 8 1 6.0496 2.0954 -0.8908 9 6 6.1980 1.8915 1.2500 10 6 7.7280 1.9485 1.2715 11 6 8.1797 3.4102 1.2354 12 7 7.6650 4.0530 0.0195 13 6 8.1929 5.4169 -0.1187 14 1 7.7056 5.9117 -0.9588 15 6 7.9181 6.2026 1.1651 16 6 9.7014 5.3572 -0.3671 17 6 9.9674 4.6662 -1.6797 18 1 9.1430 4.3054 -2.2768 19 6 11.2633 4.4948 -2.1183 20 7 12.2671 4.9347 -1.3915 21 14 11.5930 3.6377 -3.7449 22 1 10.9393 4.3929 -4.8439 23 1 13.0572 3.5798 -3.9861 24 1 11.0448 2.2584 -3.6978 25 6 6.1967 4.0524 -0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5139 0.8898 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9900 0.6025 -0.0013 34 1 5.8725 0.8513 1.2320 35 1 5.8028 2.3814 2.1399 36 1 8.1239 1.4237 0.4021 37 1 8.0970 1.4760 2.1818 38 1 9.2688 3.4539 1.2361 39 1 7.7948 3.9310 2.1122 40 1 8.4054 5.7078 2.0052 41 1 8.3094 7.2147 1.0624 42 1 6.8434 6.2451 1.3420 43 1 10.1044 6.3694 -0.4011 44 1 10.1808 4.8023 0.4394 45 1 13.1789 4.8137 -1.6998 46 1 5.8212 4.5702 0.8820 47 1 5.8456 4.5625 -0.8976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411220145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:53 Heat of formation + Delta-G solvation = -60.864590 kcal Electronic energy + Delta-G solvation = -23121.048513 eV Core-core repulsion = 19916.575111 eV Total energy + Delta-G solvation = -3204.473402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18925 -38.38836 -35.96924 -34.80327 -32.85177 -32.33173 -30.72092 -29.65703 -27.23602 -26.56797 -24.22840 -23.47230 -22.54203 -21.92841 -20.95353 -19.54164 -18.62754 -16.90677 -16.26898 -16.08630 -16.00484 -15.36997 -14.78458 -14.47990 -14.16369 -14.07479 -13.83723 -13.58800 -13.27388 -13.05763 -12.75259 -12.42089 -12.35292 -12.16374 -11.96673 -11.72005 -11.50924 -11.40206 -11.25070 -11.13246 -11.05905 -10.66843 -10.57151 -10.46618 -10.29340 -10.10824 -9.79628 -9.60905 -9.18885 -9.10463 -8.93141 -8.22003 -7.40765 -5.85205 -3.82569 2.68041 3.08198 3.42742 3.46341 3.49934 4.46228 4.52809 4.59326 4.60262 4.77472 4.86634 4.95095 5.06318 5.26065 5.27203 5.33562 5.47692 5.49333 5.51694 5.64228 5.67108 5.75664 5.78108 5.84372 5.85206 5.90823 5.97733 6.05577 6.13542 6.14996 6.21811 6.29634 6.40168 6.50102 6.62251 6.68170 6.79493 7.05298 7.40082 7.59863 7.72611 7.97053 8.07178 8.16787 8.22486 8.62937 9.23225 9.78631 11.26825 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.003720 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.119657 B = 7524.459229 C = 8071.772039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.521 3.479 6 O -0.540 6.540 7 C -0.103 4.103 8 H 0.107 0.893 9 C -0.106 4.106 10 C -0.115 4.115 11 C 0.053 3.947 12 N -0.511 5.511 13 C 0.089 3.911 14 H 0.069 0.931 15 C -0.184 4.184 16 C 0.031 3.969 17 C -0.488 4.488 18 H 0.060 0.940 19 C 0.050 3.950 20 N -0.905 5.905 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.076 3.924 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.024 0.976 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.040 0.960 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.257 0.743 46 H 0.033 0.967 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 -10.642 6.119 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.006 4.006 4 N -0.388 5.388 5 C 0.307 3.693 6 O -0.417 6.417 7 C -0.125 4.125 8 H 0.125 0.875 9 C -0.144 4.144 10 C -0.152 4.152 11 C -0.075 4.075 12 N -0.234 5.234 13 C -0.019 4.019 14 H 0.087 0.913 15 C -0.243 4.243 16 C -0.006 4.006 17 C -0.527 4.527 18 H 0.078 0.922 19 C -0.149 4.149 20 N -0.546 5.546 21 Si 0.718 3.282 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.053 4.053 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.479 -10.126 5.707 21.831 hybrid contribution 0.175 -0.457 -0.220 0.537 sum -18.304 -10.583 5.487 21.844 Atomic orbital electron populations 1.21679 0.94637 1.02088 1.02340 1.21739 0.96928 0.95975 1.02754 1.21368 0.80021 0.96930 1.02315 1.46061 1.07071 1.08990 1.76723 1.20862 0.90354 0.83246 0.74822 1.90685 1.70624 1.31389 1.48960 1.21364 0.89727 1.00151 1.01268 0.87528 1.21542 0.97395 0.99194 0.96267 1.21584 0.93740 0.97704 1.02222 1.22108 1.01647 0.93124 0.90612 1.62004 1.04734 1.19748 1.36920 1.21896 0.99980 0.85419 0.94625 0.91254 1.22524 0.99885 1.01345 1.00566 1.19194 0.87121 0.97007 0.97309 1.21142 0.91665 1.35520 1.04328 0.92178 1.25003 0.96528 0.96319 0.97077 1.69953 0.98668 1.47841 1.38138 0.86702 0.76600 0.80237 0.84636 1.20540 1.21734 1.20429 1.21766 0.89253 0.92964 1.01315 0.92225 0.92382 0.92336 0.91254 0.91322 0.91705 0.91625 0.76539 0.92048 0.92159 0.90584 0.91793 0.89278 0.95812 0.92862 0.92568 0.94079 0.96358 0.96297 0.93321 0.94935 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.14 -0.83 6.05 -26.73 -0.16 -0.99 16 3 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 4 N -0.74 -7.36 5.46 -60.29 -0.33 -7.69 16 5 C 0.52 7.17 7.15 -10.98 -0.08 7.09 16 6 O -0.54 -9.52 15.98 5.56 0.09 -9.43 16 7 C -0.10 -1.43 2.69 -91.69 -0.25 -1.67 16 8 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 9 C -0.11 -1.26 5.16 -26.61 -0.14 -1.40 16 10 C -0.11 -1.59 6.09 -26.65 -0.16 -1.75 16 11 C 0.05 0.92 4.52 -3.84 -0.02 0.90 16 12 N -0.51 -9.75 4.28 -226.70 -0.97 -10.72 16 13 C 0.09 1.85 2.26 -67.71 -0.15 1.70 16 14 H 0.07 1.50 7.97 -51.93 -0.41 1.08 16 15 C -0.18 -3.33 8.43 37.16 0.31 -3.02 16 16 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 17 C -0.49 -13.66 8.81 -34.44 -0.30 -13.96 16 18 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 19 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 20 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 21 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.08 1.29 3.72 -3.84 -0.01 1.28 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 2.98 7.95 -40.82 -0.32 2.65 16 34 H 0.06 0.56 7.66 -51.93 -0.40 0.17 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.77 6.18 -51.93 -0.32 1.45 16 39 H 0.02 0.39 6.57 -51.93 -0.34 0.05 16 40 H 0.05 0.94 6.45 -51.93 -0.34 0.60 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.69 6.85 -51.93 -0.36 0.33 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.50 6.30 -51.93 -0.33 0.18 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.03 0.57 6.84 -51.93 -0.36 0.22 16 47 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -32.16 362.84 -9.49 -41.65 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.62 Total: -0.52 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.84 Total: -9.26 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.56 Total: -44.94 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.16 -9.49 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.217 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds