Wall clock time and date at job start Tue Mar 31 2020 06:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47053 * 2 1 4 4 N 1.46495 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.34785 * 119.99768 * 180.02562 * 4 3 2 6 6 O 1.21277 * 120.00091 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99806 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.53782 * 59.89815 * 7 5 4 9 9 C 1.53120 * 109.50166 * 299.80186 * 7 5 4 10 10 C 1.53123 * 109.16085 * 182.40768 * 9 7 5 11 11 C 1.53034 * 109.27858 * 57.65415 * 10 9 7 12 12 N 1.46845 * 109.52249 * 300.82193 * 11 10 9 13 13 C 1.46907 * 111.00033 * 185.84255 * 12 11 10 14 14 H 1.08993 * 109.47199 * 186.73852 * 13 12 11 15 15 C 1.53000 * 109.46601 * 306.73683 * 13 12 11 16 16 C 1.52998 * 109.47279 * 66.73228 * 13 12 11 17 17 C 1.50706 * 109.46678 * 63.87498 * 16 13 12 18 18 H 1.07995 * 120.00126 * 359.97438 * 17 16 13 19 19 C 1.37883 * 119.99456 * 179.97438 * 17 16 13 20 20 N 1.31508 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99508 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47267 * 60.00184 * 21 19 17 23 23 H 1.48508 * 109.46983 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47515 * 300.00052 * 21 19 17 25 25 C 1.46842 * 111.20003 * 61.74122 * 12 11 10 26 26 H 1.08999 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46778 * 299.99147 * 1 2 3 28 28 H 1.08993 * 109.47256 * 59.99527 * 1 2 3 29 29 H 1.09003 * 109.46778 * 240.00853 * 2 1 3 30 30 H 1.08994 * 109.47773 * 120.00547 * 2 1 3 31 31 H 1.09001 * 109.47157 * 60.00222 * 3 2 1 32 32 H 1.09003 * 109.47069 * 300.00694 * 3 2 1 33 33 H 0.97002 * 120.00282 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.52679 * 62.50390 * 9 7 5 35 35 H 1.09001 * 109.57720 * 302.34000 * 9 7 5 36 36 H 1.09001 * 109.50192 * 297.71376 * 10 9 7 37 37 H 1.08998 * 109.50155 * 177.59653 * 10 9 7 38 38 H 1.08997 * 109.46232 * 180.80737 * 11 10 9 39 39 H 1.08998 * 109.45838 * 60.83412 * 11 10 9 40 40 H 1.09001 * 109.47475 * 60.00203 * 15 13 12 41 41 H 1.09001 * 109.46935 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47014 * 299.99634 * 15 13 12 43 43 H 1.08994 * 109.47154 * 183.87514 * 16 13 12 44 44 H 1.08998 * 109.47258 * 303.87441 * 16 13 12 45 45 H 0.97003 * 120.00393 * 179.97438 * 20 19 17 46 46 H 1.09007 * 109.46155 * 58.27582 * 25 12 11 47 47 H 1.09000 * 109.46473 * 178.24173 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0002 6 8 3.5724 3.6601 0.0011 7 6 5.6858 2.6098 -0.0014 8 1 6.0496 2.0954 -0.8908 9 6 6.1980 1.8915 1.2500 10 6 7.7280 1.9485 1.2715 11 6 8.1797 3.4102 1.2354 12 7 7.6650 4.0530 0.0195 13 6 8.1929 5.4169 -0.1187 14 1 7.7056 5.9117 -0.9588 15 6 7.9181 6.2026 1.1651 16 6 9.7014 5.3572 -0.3671 17 6 9.9674 4.6662 -1.6797 18 1 9.1430 4.3054 -2.2768 19 6 11.2633 4.4948 -2.1183 20 7 12.2671 4.9347 -1.3915 21 14 11.5930 3.6377 -3.7449 22 1 10.9393 4.3929 -4.8439 23 1 13.0572 3.5798 -3.9861 24 1 11.0448 2.2584 -3.6978 25 6 6.1967 4.0524 -0.0006 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8935 -0.5139 0.8898 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9900 0.6025 -0.0013 34 1 5.8725 0.8513 1.2320 35 1 5.8028 2.3814 2.1399 36 1 8.1239 1.4237 0.4021 37 1 8.0970 1.4760 2.1818 38 1 9.2688 3.4539 1.2361 39 1 7.7948 3.9310 2.1122 40 1 8.4054 5.7078 2.0052 41 1 8.3094 7.2147 1.0624 42 1 6.8434 6.2451 1.3420 43 1 10.1044 6.3694 -0.4011 44 1 10.1808 4.8023 0.4394 45 1 13.1789 4.8137 -1.6998 46 1 5.8212 4.5702 0.8820 47 1 5.8456 4.5625 -0.8976 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411220145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:52 Heat of formation + Delta-G solvation = -82.209689 kcal Electronic energy + Delta-G solvation = -23121.974106 eV Core-core repulsion = 19916.575111 eV Total energy + Delta-G solvation = -3205.398995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33979 -39.73015 -36.79560 -36.28021 -34.52384 -33.48674 -31.94838 -31.21585 -29.13603 -27.34061 -25.67158 -24.99366 -24.06244 -22.55623 -22.21455 -20.72680 -20.08562 -18.32894 -18.01516 -17.24738 -16.84586 -16.56324 -16.48503 -15.89897 -15.42908 -15.35424 -14.99546 -14.86129 -14.57154 -14.07644 -13.81520 -13.73050 -13.58621 -13.34690 -13.27679 -13.07915 -12.92764 -12.82783 -12.55530 -12.42025 -12.38138 -12.02480 -11.86263 -11.74205 -11.70655 -11.66903 -11.26359 -11.08259 -11.03115 -10.65867 -10.44203 -10.10002 -8.92255 -8.07100 -6.11817 1.43822 1.46514 1.54041 1.60699 2.15484 2.49839 3.13809 3.29653 3.65431 3.82208 3.92138 3.97753 4.09158 4.18056 4.27396 4.31123 4.36755 4.40016 4.44728 4.52481 4.66421 4.67637 4.74982 4.77939 4.80947 4.88604 4.92688 5.01741 5.06799 5.09875 5.16180 5.20019 5.20701 5.25759 5.28412 5.35098 5.48829 5.51249 5.53488 5.71112 5.92020 6.33161 6.46514 6.50717 6.55769 7.01106 7.24129 7.53580 9.04829 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.003720 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.119657 B = 7524.459229 C = 8071.772039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.716 5.716 5 C 0.522 3.478 6 O -0.585 6.585 7 C -0.098 4.098 8 H 0.111 0.889 9 C -0.096 4.096 10 C -0.109 4.109 11 C 0.052 3.948 12 N -0.525 5.525 13 C 0.094 3.906 14 H 0.057 0.943 15 C -0.173 4.173 16 C 0.039 3.961 17 C -0.498 4.498 18 H 0.057 0.943 19 C -0.004 4.004 20 N -0.940 5.940 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.268 1.268 25 C 0.082 3.918 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.416 0.584 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.032 0.968 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.055 0.945 43 H -0.010 1.010 44 H 0.001 0.999 45 H 0.258 0.742 46 H 0.027 0.973 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.857 -13.288 6.215 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.008 4.008 4 N -0.369 5.369 5 C 0.309 3.691 6 O -0.465 6.465 7 C -0.120 4.120 8 H 0.129 0.871 9 C -0.134 4.134 10 C -0.147 4.147 11 C -0.075 4.075 12 N -0.249 5.249 13 C -0.014 4.014 14 H 0.075 0.925 15 C -0.232 4.232 16 C 0.002 3.998 17 C -0.537 4.537 18 H 0.075 0.925 19 C -0.200 4.200 20 N -0.583 5.583 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.214 1.214 24 H -0.193 1.193 25 C -0.047 4.047 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.254 0.746 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.008 0.992 44 H 0.019 0.981 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.969 -12.826 5.807 24.433 hybrid contribution 0.619 0.387 -0.237 0.768 sum -19.350 -12.439 5.570 23.668 Atomic orbital electron populations 1.21697 0.94233 1.02805 1.02129 1.21691 0.97162 0.93774 1.03784 1.21469 0.79128 0.98923 1.01292 1.45922 1.07647 1.08566 1.74741 1.20789 0.90200 0.83575 0.74520 1.90674 1.71287 1.33167 1.51392 1.21284 0.89973 0.98019 1.02690 0.87104 1.21520 0.95594 1.01265 0.95034 1.21553 0.95251 0.94795 1.03055 1.22117 0.99614 0.95717 0.90094 1.61919 1.06158 1.18476 1.38299 1.21603 0.96771 0.87343 0.95688 0.92483 1.22376 1.00861 1.00906 0.99049 1.19023 0.90208 0.94636 0.95928 1.21426 0.91717 1.35376 1.05147 0.92482 1.25845 0.96348 0.97092 1.00747 1.70086 0.99030 1.49125 1.40012 0.85626 0.76505 0.79429 0.80168 1.19869 1.21382 1.19301 1.21679 0.87595 0.95349 1.00076 0.91010 0.92528 0.92731 0.90387 0.90043 0.92583 0.92943 0.74627 0.88083 0.91988 0.91504 0.89340 0.92623 0.95000 0.92547 0.92408 0.92563 0.99176 0.98112 0.93282 0.95498 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.13 -1.18 6.05 30.60 0.19 -0.99 16 3 C 0.12 1.87 5.67 86.38 0.49 2.36 16 4 N -0.72 -12.47 5.46 -463.06 -2.53 -15.00 16 5 C 0.52 13.57 7.15 87.65 0.63 14.20 16 6 O -0.59 -20.43 15.98 -3.02 -0.05 -20.48 16 7 C -0.10 -2.53 2.69 -11.49 -0.03 -2.57 16 8 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 9 C -0.10 -1.99 5.16 30.68 0.16 -1.83 16 10 C -0.11 -2.77 6.09 30.65 0.19 -2.59 16 11 C 0.05 1.79 4.52 86.32 0.39 2.19 16 12 N -0.52 -20.21 4.28 -871.14 -3.73 -23.94 16 13 C 0.09 4.06 2.26 44.91 0.10 4.16 16 14 H 0.06 2.56 7.97 -2.39 -0.02 2.54 16 15 C -0.17 -6.32 8.43 71.98 0.61 -5.71 16 16 C 0.04 2.08 4.37 29.85 0.13 2.21 16 17 C -0.50 -28.54 8.81 25.60 0.23 -28.31 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 19 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 20 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 21 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 C 0.08 2.76 3.72 86.33 0.32 3.08 16 26 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.42 4.58 7.95 -92.71 -0.74 3.84 16 34 H 0.10 1.34 7.66 -2.39 -0.02 1.33 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 2.27 6.18 -2.39 -0.01 2.26 16 39 H 0.03 1.03 6.57 -2.39 -0.02 1.02 16 40 H 0.06 2.00 6.45 -2.39 -0.02 1.99 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.88 6.85 -2.39 -0.02 1.86 16 43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.00 0.04 6.30 -2.39 -0.02 0.02 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.03 0.94 6.84 -2.38 -0.02 0.92 16 47 H 0.06 2.06 7.98 -2.39 -0.02 2.05 16 Total: -1.00 -71.48 362.84 0.76 -70.72 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.19 Total: 13.01 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 4.57 Total: -14.21 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -5.97 Total: -96.53 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.48 0.76 -70.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.490 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds