Wall clock time and date at job start Tue Mar 31 2020 06:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47281 * 2 1 4 4 N 1.46499 * 109.47527 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00325 * 179.72591 * 4 3 2 6 6 O 1.21280 * 119.99892 * 0.27736 * 5 4 3 7 7 C 1.50703 * 120.00110 * 180.27451 * 5 4 3 8 8 H 1.08997 * 109.50467 * 299.92452 * 7 5 4 9 9 C 1.53117 * 109.50119 * 60.00280 * 7 5 4 10 10 C 1.53118 * 109.16211 * 177.59612 * 9 7 5 11 11 C 1.53035 * 109.27421 * 302.34473 * 10 9 7 12 12 N 1.46847 * 109.52460 * 59.18011 * 11 10 9 13 13 C 1.46899 * 110.99653 * 174.16075 * 12 11 10 14 14 H 1.08998 * 109.47558 * 310.82316 * 13 12 11 15 15 C 1.52998 * 109.47546 * 70.82598 * 13 12 11 16 16 C 1.53005 * 109.46536 * 190.82752 * 13 12 11 17 17 C 1.50698 * 109.47408 * 62.55524 * 16 13 12 18 18 H 1.08003 * 119.99806 * 5.26505 * 17 16 13 19 19 C 1.37879 * 119.99983 * 185.26138 * 17 16 13 20 20 N 1.31509 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99827 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47277 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47046 * 119.99890 * 21 19 17 24 24 H 1.48499 * 109.47084 * 240.00369 * 21 19 17 25 25 C 1.46841 * 111.19513 * 298.25399 * 12 11 10 26 26 H 1.08996 * 109.47340 * 300.00041 * 1 2 3 27 27 H 1.08996 * 109.46784 * 60.00085 * 1 2 3 28 28 H 1.08999 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47112 * 240.00300 * 2 1 3 30 30 H 1.09000 * 109.46932 * 120.00405 * 2 1 3 31 31 H 1.09003 * 109.46802 * 60.00110 * 3 2 1 32 32 H 1.09000 * 109.47469 * 300.00077 * 3 2 1 33 33 H 0.96999 * 119.99622 * 0.02562 * 4 3 2 34 34 H 1.09009 * 109.52458 * 297.50187 * 9 7 5 35 35 H 1.09005 * 109.52615 * 57.62024 * 9 7 5 36 36 H 1.08995 * 109.50287 * 62.28625 * 10 9 7 37 37 H 1.09004 * 109.50244 * 182.36429 * 10 9 7 38 38 H 1.09000 * 109.45993 * 179.19580 * 11 10 9 39 39 H 1.08999 * 109.46324 * 299.15998 * 11 10 9 40 40 H 1.09002 * 109.46689 * 60.00049 * 15 13 12 41 41 H 1.09000 * 109.47289 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.47327 * 299.99812 * 15 13 12 43 43 H 1.09002 * 109.46946 * 182.55513 * 16 13 12 44 44 H 1.08997 * 109.46975 * 302.55092 * 16 13 12 45 45 H 0.96999 * 120.00259 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46935 * 301.72587 * 25 12 11 47 47 H 1.09000 * 109.46343 * 181.75903 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 -0.0049 6 8 3.5725 3.6600 -0.0052 7 6 5.6859 2.6096 -0.0105 8 1 6.0531 2.0994 0.8799 9 6 6.1924 1.8849 -1.2605 10 6 7.7223 1.9416 -1.2892 11 6 8.1741 3.4035 -1.2626 12 7 7.6650 4.0526 -0.0477 13 6 8.1935 5.4171 0.0810 14 1 9.2743 5.4030 -0.0592 15 6 7.5533 6.3143 -0.9802 16 6 7.8670 5.9612 1.4733 17 6 8.5492 5.1141 2.5163 18 1 9.2226 4.3252 2.2154 19 6 8.3139 5.3464 3.8549 20 7 7.4936 6.3068 4.2213 21 14 9.1590 4.2960 5.1478 22 1 10.0252 3.2912 4.4805 23 1 9.9898 5.1615 6.0231 24 1 8.1346 3.6006 5.9677 25 6 6.1968 4.0521 -0.0210 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9900 0.6024 0.0006 34 1 5.8669 0.8448 -1.2356 35 1 5.7921 2.3705 -2.1506 36 1 8.1221 1.4213 -0.4190 37 1 8.0872 1.4638 -2.1984 38 1 9.2632 3.4472 -1.2686 39 1 7.7853 3.9198 -2.1404 40 1 6.4725 6.3285 -0.8399 41 1 7.9452 7.3269 -0.8844 42 1 7.7859 5.9267 -1.9721 43 1 8.2191 6.9896 1.5532 44 1 6.7888 5.9330 1.6306 45 1 7.3277 6.4700 5.1630 46 1 5.8172 4.5654 -0.9046 47 1 5.8497 4.5669 0.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411220146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:56 Heat of formation + Delta-G solvation = -59.967575 kcal Electronic energy + Delta-G solvation = -23395.786855 eV Core-core repulsion = 20191.352350 eV Total energy + Delta-G solvation = -3204.434504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07444 -38.31992 -35.82853 -34.79751 -32.77064 -32.28279 -30.76429 -29.50389 -27.23278 -26.51032 -24.11314 -23.44098 -22.78308 -21.82075 -20.52918 -19.63620 -18.60209 -16.86777 -16.20834 -16.02988 -15.88023 -15.28389 -14.60890 -14.47580 -14.37411 -13.89130 -13.78602 -13.36516 -13.28186 -12.97805 -12.72800 -12.36316 -12.24515 -12.14889 -12.01211 -11.71893 -11.41006 -11.39981 -11.14155 -11.05944 -10.99801 -10.70172 -10.57992 -10.46823 -10.25841 -9.99178 -9.91488 -9.43854 -9.08113 -9.03778 -8.87870 -8.19888 -7.39249 -5.82012 -3.79518 2.85546 3.21987 3.41075 3.48383 3.53294 4.53211 4.60127 4.61766 4.70153 4.83639 4.96050 5.00281 5.09710 5.34814 5.37018 5.38998 5.49120 5.54902 5.55773 5.70758 5.73766 5.79151 5.85294 5.86557 5.88320 5.93696 5.95817 6.02183 6.11269 6.13471 6.26865 6.36103 6.43472 6.50207 6.58977 6.75566 6.84495 7.06679 7.54733 7.61403 7.77498 7.98090 8.11096 8.19044 8.39335 8.65019 9.26232 9.81324 11.30086 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.004755 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.684865 B = 5887.464951 C = 6815.397029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.737 5.737 5 C 0.520 3.480 6 O -0.535 6.535 7 C -0.104 4.104 8 H 0.108 0.892 9 C -0.106 4.106 10 C -0.113 4.113 11 C 0.050 3.950 12 N -0.510 5.510 13 C 0.090 3.910 14 H 0.068 0.932 15 C -0.185 4.185 16 C 0.027 3.973 17 C -0.486 4.486 18 H 0.060 0.940 19 C 0.050 3.950 20 N -0.903 5.903 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.080 3.920 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.399 0.601 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.015 0.985 44 H 0.024 0.976 45 H 0.256 0.744 46 H 0.032 0.968 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 -13.688 -12.462 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C -0.007 4.007 4 N -0.390 5.390 5 C 0.307 3.693 6 O -0.410 6.410 7 C -0.126 4.126 8 H 0.126 0.874 9 C -0.144 4.144 10 C -0.151 4.151 11 C -0.079 4.079 12 N -0.233 5.233 13 C -0.018 4.018 14 H 0.087 0.913 15 C -0.244 4.244 16 C -0.010 4.010 17 C -0.525 4.525 18 H 0.078 0.922 19 C -0.149 4.149 20 N -0.544 5.544 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.215 1.215 24 H -0.214 1.214 25 C -0.049 4.049 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.033 0.967 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.156 -13.098 -11.902 19.487 hybrid contribution 0.273 -0.512 0.163 0.603 sum -7.883 -13.610 -11.738 19.625 Atomic orbital electron populations 1.21678 0.94689 1.01997 1.02376 1.21731 0.96889 0.96062 1.02648 1.21359 0.80115 0.96814 1.02363 1.46042 1.06994 1.08912 1.77048 1.20825 0.90323 0.83254 0.74928 1.90704 1.70526 1.31321 1.48483 1.21373 0.89962 1.00390 1.00838 0.87427 1.21533 0.96892 0.99305 0.96695 1.21556 0.94479 0.97160 1.01907 1.22102 0.99838 0.94063 0.91883 1.61992 1.06922 1.19545 1.34887 1.21877 0.97700 0.84953 0.97286 0.91332 1.22533 1.01862 1.01031 0.98983 1.19225 0.97658 0.95410 0.88675 1.21176 1.25329 1.15738 0.90210 0.92177 1.25001 0.95710 0.95535 0.98679 1.69977 1.36853 1.31647 1.15894 0.86605 0.79346 0.80505 0.81919 1.19814 1.21475 1.21423 1.21776 0.87940 0.92786 1.02359 0.92278 0.92418 0.92300 0.91435 0.91266 0.91551 0.91766 0.76718 0.92045 0.92163 0.90754 0.91934 0.91182 0.95809 0.92592 0.92597 0.94264 0.96714 0.95765 0.93442 0.95012 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.14 -0.98 6.05 -26.74 -0.16 -1.15 16 3 C 0.12 1.24 5.67 -4.05 -0.02 1.21 16 4 N -0.74 -8.52 5.46 -60.30 -0.33 -8.85 16 5 C 0.52 8.21 7.16 -10.98 -0.08 8.13 16 6 O -0.53 -10.72 15.98 5.56 0.09 -10.63 16 7 C -0.10 -1.60 2.69 -91.69 -0.25 -1.85 16 8 H 0.11 1.70 8.14 -51.93 -0.42 1.27 16 9 C -0.11 -1.28 5.16 -26.61 -0.14 -1.42 16 10 C -0.11 -1.41 6.09 -26.65 -0.16 -1.57 16 11 C 0.05 0.76 5.14 -3.83 -0.02 0.74 16 12 N -0.51 -9.79 4.25 -226.70 -0.96 -10.75 16 13 C 0.09 1.87 2.28 -67.71 -0.15 1.72 16 14 H 0.07 1.43 7.97 -51.93 -0.41 1.01 16 15 C -0.19 -3.39 8.44 37.16 0.31 -3.07 16 16 C 0.03 0.71 4.35 -27.88 -0.12 0.59 16 17 C -0.49 -13.74 8.77 -34.44 -0.30 -14.04 16 18 H 0.06 1.69 7.75 -52.48 -0.41 1.28 16 19 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 20 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 21 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 C 0.08 1.52 3.10 -3.84 -0.01 1.51 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.40 3.46 7.94 -40.82 -0.32 3.14 16 34 H 0.06 0.57 7.65 -51.92 -0.40 0.17 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 39 H 0.02 0.36 6.90 -51.93 -0.36 0.00 16 40 H 0.06 1.07 6.45 -51.93 -0.34 0.73 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.63 6.84 -51.93 -0.36 0.28 16 43 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.69 6.35 -51.93 -0.33 0.36 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.03 0.61 6.51 -51.93 -0.34 0.28 16 47 H 0.09 2.19 6.17 -51.93 -0.32 1.87 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -33.04 362.81 -9.48 -42.52 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.63 Total: 0.53 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.83 Total: -8.46 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.56 Total: -46.64 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.04 -9.48 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.447 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds